HEADER    LYASE                                   10-DEC-09   3L0N              
TITLE     HUMAN OROTIDYL-5'-MONOPHOSPHATE DECARBOXYLASE IN COMPLEX WITH 6-      
TITLE    2 MERCAPTO-UMP                                                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: URIDINE 5'-MONOPHOSPHATE SYNTHASE;                         
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 FRAGMENT: UNP RESIDUES 224-480;                                      
COMPND   5 SYNONYM: UMP SYNTHASE, OROTATE PHOSPHORIBOSYLTRANSFERASE, OPRTASE,   
COMPND   6 OROTIDINE 5'-PHOSPHATE DECARBOXYLASE, OMPDECASE;                     
COMPND   7 EC: 4.1.1.23;                                                        
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_TAXID: 9606;                                                
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    DECARBOXYLASE, MULTIFUNCTIONAL ENZYME, PYRIMIDINE BIOSYNTHESIS, LYASE 
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    D.HEINRICH,J.WITTMANN,U.DIEDERICHSEN,M.RUDOLPH                        
REVDAT   2   20-MAR-24 3L0N    1       REMARK SEQADV                            
REVDAT   1   26-JAN-10 3L0N    0                                                
SPRSDE     26-JAN-10 3L0N      3EX5                                             
JRNL        AUTH   D.HEINRICH,U.DIEDERICHSEN,M.G.RUDOLPH                        
JRNL        TITL   LYS314 IS A NUCLEOPHILE IN NON-CLASSICAL REACTIONS OF        
JRNL        TITL 2 OROTIDINE-5'-MONOPHOSPHATE DECARBOXYLASE                     
JRNL        REF    CHEMISTRY                     V.  15  6619 2009              
JRNL        REFN                   ISSN 0947-6539                               
JRNL        PMID   19472232                                                     
JRNL        DOI    10.1002/CHEM.200900397                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.74 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.6.0041                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 34.65                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 96.2                           
REMARK   3   NUMBER OF REFLECTIONS             : 51149                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.182                           
REMARK   3   R VALUE            (WORKING SET) : 0.180                           
REMARK   3   FREE R VALUE                     : 0.207                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2714                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.74                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.79                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2559                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 65.91                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3850                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 153                          
REMARK   3   BIN FREE R VALUE                    : 0.4790                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3908                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 44                                      
REMARK   3   SOLVENT ATOMS            : 262                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 26.46                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 22.01                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -5.35000                                             
REMARK   3    B22 (A**2) : -14.23000                                            
REMARK   3    B33 (A**2) : 19.57000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 14.96000                                             
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.024         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.023         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.065         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.147         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.960                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.952                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  4060 ; 0.017 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  2770 ; 0.001 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  5493 ; 1.610 ; 1.991       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  6782 ; 0.985 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   520 ; 6.398 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   169 ;35.621 ;23.964       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   732 ;14.110 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    28 ;17.245 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   630 ; 0.092 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  4484 ; 0.008 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   790 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2): 22555 ; 0.026 ; 0.200       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2): 42955 ; 0.021 ; 0.200       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TWIN DETAILS                                                        
REMARK   3   NUMBER OF TWIN DOMAINS  : 2                                        
REMARK   3      TWIN DOMAIN   : 1                                               
REMARK   3      TWIN OPERATOR : H, K, L                                         
REMARK   3      TWIN FRACTION : 0.762                                           
REMARK   3      TWIN DOMAIN   : 2                                               
REMARK   3      TWIN OPERATOR : L, -K, H                                        
REMARK   3      TWIN FRACTION : 0.238                                           
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : BABINET MODEL WITH MASK                              
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 3L0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000056683.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 29-OCT-07                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : NULL                               
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU                             
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : MAR SCANNER 345 MM PLATE           
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : NULL                               
REMARK 200  DATA SCALING SOFTWARE          : NULL                               
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 53875                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.740                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 34.650                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 97.6                               
REMARK 200  DATA REDUNDANCY                : 4.900                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.07800                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 12.6000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.79                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 80.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.60                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.57500                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 1.400                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: NULL                                                  
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 49.67                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.0, 1.8M (NH4)2SO4,    
REMARK 280  VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 300.0K                   
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       31.08250            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 18590 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A    -3                                                      
REMARK 465     ALA A    -2                                                      
REMARK 465     MET A    -1                                                      
REMARK 465     GLY A   255                                                      
REMARK 465     VAL A   256                                                      
REMARK 465     GLY B    -3                                                      
REMARK 465     ALA B    -2                                                      
REMARK 465     MET B    -1                                                      
REMARK 465     GLY B   255                                                      
REMARK 465     VAL B   256                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   ND1  HIS A   138     O    HOH A   386              2.09            
REMARK 500   OE2  GLU A   167     O    HOH A   310              2.11            
REMARK 500   OE1  GLU A    82     O    HOH A   330              2.17            
REMARK 500   OE1  GLU B   168     O    HOH B   271              2.18            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A  21   NE  -  CZ  -  NH1 ANGL. DEV. =   3.1 DEGREES          
REMARK 500    ARG B 164   NE  -  CZ  -  NH1 ANGL. DEV. =   3.9 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLU A  82       74.93     65.82                                   
REMARK 500    ALA A  92       35.57   -158.42                                   
REMARK 500    HIS A 169       47.61   -141.64                                   
REMARK 500    GLU B  82       73.54     63.83                                   
REMARK 500    ALA B  92       37.18   -156.88                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 600                                                                      
REMARK 600 HETEROGEN                                                            
REMARK 600                                                                      
REMARK 600 ACCORDING TO AUTHORS, THE LIGAND S5P HAS DISTORTED GEOMETRY UPON     
REMARK 600 BINDING TO THE PROTEIN.                                              
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S5P A 257                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S5P B 257                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3L0K   RELATED DB: PDB                                   
DBREF  3L0N A    0   256  UNP    P11172   PYR5_HUMAN     224    480             
DBREF  3L0N B    0   256  UNP    P11172   PYR5_HUMAN     224    480             
SEQADV 3L0N GLY A   -3  UNP  P11172              EXPRESSION TAG                 
SEQADV 3L0N ALA A   -2  UNP  P11172              EXPRESSION TAG                 
SEQADV 3L0N MET A   -1  UNP  P11172              EXPRESSION TAG                 
SEQADV 3L0N GLY B   -3  UNP  P11172              EXPRESSION TAG                 
SEQADV 3L0N ALA B   -2  UNP  P11172              EXPRESSION TAG                 
SEQADV 3L0N MET B   -1  UNP  P11172              EXPRESSION TAG                 
SEQRES   1 A  260  GLY ALA MET GLU LEU SER PHE GLY ALA ARG ALA GLU LEU          
SEQRES   2 A  260  PRO ARG ILE HIS PRO VAL ALA SER LYS LEU LEU ARG LEU          
SEQRES   3 A  260  MET GLN LYS LYS GLU THR ASN LEU CYS LEU SER ALA ASP          
SEQRES   4 A  260  VAL SER LEU ALA ARG GLU LEU LEU GLN LEU ALA ASP ALA          
SEQRES   5 A  260  LEU GLY PRO SER ILE CYS MET LEU LYS THR HIS VAL ASP          
SEQRES   6 A  260  ILE LEU ASN ASP PHE THR LEU ASP VAL MET LYS GLU LEU          
SEQRES   7 A  260  ILE THR LEU ALA LYS CYS HIS GLU PHE LEU ILE PHE GLU          
SEQRES   8 A  260  ASP ARG LYS PHE ALA ASP ILE GLY ASN THR VAL LYS LYS          
SEQRES   9 A  260  GLN TYR GLU GLY GLY ILE PHE LYS ILE ALA SER TRP ALA          
SEQRES  10 A  260  ASP LEU VAL ASN ALA HIS VAL VAL PRO GLY SER GLY VAL          
SEQRES  11 A  260  VAL LYS GLY LEU GLN GLU VAL GLY LEU PRO LEU HIS ARG          
SEQRES  12 A  260  GLY CYS LEU LEU ILE ALA GLU MET SER SER THR GLY SER          
SEQRES  13 A  260  LEU ALA THR GLY ASP TYR THR ARG ALA ALA VAL ARG MET          
SEQRES  14 A  260  ALA GLU GLU HIS SER GLU PHE VAL VAL GLY PHE ILE SER          
SEQRES  15 A  260  GLY SER ARG VAL SER MET LYS PRO GLU PHE LEU HIS LEU          
SEQRES  16 A  260  THR PRO GLY VAL GLN LEU GLU ALA GLY GLY ASP ASN LEU          
SEQRES  17 A  260  GLY GLN GLN TYR ASN SER PRO GLN GLU VAL ILE GLY LYS          
SEQRES  18 A  260  ARG GLY SER ASP ILE ILE ILE VAL GLY ARG GLY ILE ILE          
SEQRES  19 A  260  SER ALA ALA ASP ARG LEU GLU ALA ALA GLU MET TYR ARG          
SEQRES  20 A  260  LYS ALA ALA TRP GLU ALA TYR LEU SER ARG LEU GLY VAL          
SEQRES   1 B  260  GLY ALA MET GLU LEU SER PHE GLY ALA ARG ALA GLU LEU          
SEQRES   2 B  260  PRO ARG ILE HIS PRO VAL ALA SER LYS LEU LEU ARG LEU          
SEQRES   3 B  260  MET GLN LYS LYS GLU THR ASN LEU CYS LEU SER ALA ASP          
SEQRES   4 B  260  VAL SER LEU ALA ARG GLU LEU LEU GLN LEU ALA ASP ALA          
SEQRES   5 B  260  LEU GLY PRO SER ILE CYS MET LEU LYS THR HIS VAL ASP          
SEQRES   6 B  260  ILE LEU ASN ASP PHE THR LEU ASP VAL MET LYS GLU LEU          
SEQRES   7 B  260  ILE THR LEU ALA LYS CYS HIS GLU PHE LEU ILE PHE GLU          
SEQRES   8 B  260  ASP ARG LYS PHE ALA ASP ILE GLY ASN THR VAL LYS LYS          
SEQRES   9 B  260  GLN TYR GLU GLY GLY ILE PHE LYS ILE ALA SER TRP ALA          
SEQRES  10 B  260  ASP LEU VAL ASN ALA HIS VAL VAL PRO GLY SER GLY VAL          
SEQRES  11 B  260  VAL LYS GLY LEU GLN GLU VAL GLY LEU PRO LEU HIS ARG          
SEQRES  12 B  260  GLY CYS LEU LEU ILE ALA GLU MET SER SER THR GLY SER          
SEQRES  13 B  260  LEU ALA THR GLY ASP TYR THR ARG ALA ALA VAL ARG MET          
SEQRES  14 B  260  ALA GLU GLU HIS SER GLU PHE VAL VAL GLY PHE ILE SER          
SEQRES  15 B  260  GLY SER ARG VAL SER MET LYS PRO GLU PHE LEU HIS LEU          
SEQRES  16 B  260  THR PRO GLY VAL GLN LEU GLU ALA GLY GLY ASP ASN LEU          
SEQRES  17 B  260  GLY GLN GLN TYR ASN SER PRO GLN GLU VAL ILE GLY LYS          
SEQRES  18 B  260  ARG GLY SER ASP ILE ILE ILE VAL GLY ARG GLY ILE ILE          
SEQRES  19 B  260  SER ALA ALA ASP ARG LEU GLU ALA ALA GLU MET TYR ARG          
SEQRES  20 B  260  LYS ALA ALA TRP GLU ALA TYR LEU SER ARG LEU GLY VAL          
HET    S5P  A 257      22                                                       
HET    S5P  B 257      22                                                       
HETNAM     S5P 6-SULFANYLURIDINE-5'-PHOSPHATE                                   
HETSYN     S5P 6-MERCAPTOURIDINE-5'-MONOPHOSPHATE                               
FORMUL   3  S5P    2(C9 H13 N2 O9 P S)                                          
FORMUL   5  HOH   *262(H2 O)                                                    
HELIX    1   1 SER A    2  ALA A    7  1                                   6    
HELIX    2   2 HIS A   13  GLU A   27  1                                  15    
HELIX    3   3 LEU A   38  GLY A   50  1                                  13    
HELIX    4   4 PRO A   51  ILE A   53  5                                   3    
HELIX    5   5 HIS A   59  LEU A   63  5                                   5    
HELIX    6   6 THR A   67  GLU A   82  1                                  16    
HELIX    7   7 ILE A   94  GLY A  104  1                                  11    
HELIX    8   8 LYS A  108  TRP A  112  5                                   5    
HELIX    9   9 SER A  124  LEU A  135  1                                  12    
HELIX   10  10 THR A  155  GLU A  168  1                                  14    
HELIX   11  11 SER A  210  LYS A  217  1                                   8    
HELIX   12  12 GLY A  226  SER A  231  1                                   6    
HELIX   13  13 ASP A  234  LEU A  254  1                                  21    
HELIX   14  14 SER B    2  ALA B    7  1                                   6    
HELIX   15  15 HIS B   13  GLU B   27  1                                  15    
HELIX   16  16 LEU B   38  GLY B   50  1                                  13    
HELIX   17  17 PRO B   51  ILE B   53  5                                   3    
HELIX   18  18 HIS B   59  LEU B   63  5                                   5    
HELIX   19  19 THR B   67  GLU B   82  1                                  16    
HELIX   20  20 ILE B   94  GLY B  104  1                                  11    
HELIX   21  21 LYS B  108  ALA B  113  1                                   6    
HELIX   22  22 SER B  124  LEU B  135  1                                  12    
HELIX   23  23 GLY B  156  HIS B  169  1                                  14    
HELIX   24  24 SER B  210  LYS B  217  1                                   8    
HELIX   25  25 GLY B  226  SER B  231  1                                   6    
HELIX   26  26 ASP B  234  LEU B  254  1                                  21    
SHEET    1   A 9 LEU A  30  SER A  33  0                                        
SHEET    2   A 9 MET A  55  THR A  58  1  O  LYS A  57   N  LEU A  32           
SHEET    3   A 9 LEU A  84  PHE A  91  1  O  PHE A  86   N  THR A  58           
SHEET    4   A 9 LEU A 115  ALA A 118  1  O  LEU A 115   N  GLU A  87           
SHEET    5   A 9 GLY A 140  ILE A 144  1  O  ILE A 144   N  ALA A 118           
SHEET    6   A 9 VAL A 173  ILE A 177  1  O  VAL A 174   N  CYS A 141           
SHEET    7   A 9 LEU A 189  THR A 192  1  O  LEU A 189   N  PHE A 176           
SHEET    8   A 9 ILE A 222  VAL A 225  1  O  ILE A 222   N  THR A 192           
SHEET    9   A 9 LEU A  30  SER A  33  1  N  CYS A  31   O  ILE A 223           
SHEET    1   B 9 LEU B  30  SER B  33  0                                        
SHEET    2   B 9 MET B  55  THR B  58  1  O  LYS B  57   N  LEU B  32           
SHEET    3   B 9 LEU B  84  PHE B  91  1  O  PHE B  86   N  THR B  58           
SHEET    4   B 9 LEU B 115  HIS B 119  1  O  HIS B 119   N  PHE B  91           
SHEET    5   B 9 GLY B 140  ILE B 144  1  O  ILE B 144   N  ALA B 118           
SHEET    6   B 9 VAL B 173  ILE B 177  1  O  GLY B 175   N  LEU B 143           
SHEET    7   B 9 LEU B 189  THR B 192  1  O  LEU B 189   N  PHE B 176           
SHEET    8   B 9 ILE B 222  VAL B 225  1  O  ILE B 222   N  THR B 192           
SHEET    9   B 9 LEU B  30  SER B  33  1  N  CYS B  31   O  ILE B 223           
SITE     1 AC1 19 SER A  33  ASP A  35  LYS A  57  HIS A  59                    
SITE     2 AC1 19 ASP A  88  LYS A  90  MET A 147  SER A 148                    
SITE     3 AC1 19 PRO A 193  GLN A 206  TYR A 208  GLY A 226                    
SITE     4 AC1 19 ARG A 227  HOH A 285  HOH A 300  HOH A 316                    
SITE     5 AC1 19 ASP B  93  ILE B  94  THR B  97                               
SITE     1 AC2 20 ASP A  93  ILE A  94  THR A  97  SER B  33                    
SITE     2 AC2 20 ASP B  35  LYS B  57  HIS B  59  ASP B  88                    
SITE     3 AC2 20 LYS B  90  MET B 147  SER B 148  PRO B 193                    
SITE     4 AC2 20 GLN B 206  TYR B 208  GLY B 226  ARG B 227                    
SITE     5 AC2 20 HOH B 259  HOH B 266  HOH B 296  HOH B 314                    
CRYST1   69.644   62.165   69.935  90.00 113.99  90.00 P 1 21 1      4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.014359  0.000000  0.006389        0.00000                         
SCALE2      0.000000  0.016086  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.015651        0.00000