HEADER HYDROLASE INHIBITOR 10-DEC-09 3L0R TITLE CRYSTAL STRUCTURE OF SALIVARY CYSTATIN FROM THE SOFT TICK ORNITHODOROS TITLE 2 MOUBATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATIN-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OMC2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORNITHODOROS MOUBATA; SOURCE 3 ORGANISM_COMMON: SOFT TICK; SOURCE 4 ORGANISM_TAXID: 6938; SOURCE 5 GENE: OMC2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBACPAK9 KEYWDS SOFT TICK, CYSTATIN, PROTEASE INHIBITOR, THIOL PROTEASE INHIBITOR, KEYWDS 2 HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR P.REZACOVA,J.BRYNDA,J.F.ANDERSEN,J.SALAT,Z.KOVAROVA,M.MARES REVDAT 2 01-NOV-23 3L0R 1 REMARK SEQADV REVDAT 1 30-JUN-10 3L0R 0 JRNL AUTH J.SALAT,G.C.PAESEN,P.REZACOVA,M.KOTSYFAKIS,Z.KOVAROVA, JRNL AUTH 2 M.SANDA,J.MAJTAN,L.GRUNCLOVA,H.HORKA,J.F.ANDERSEN,J.BRYNDA, JRNL AUTH 3 M.HORN,M.A.NUNN,P.KOPACEK,J.KOPECKY,M.MARES JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF AN JRNL TITL 2 IMMUNOMODULATORY SALIVARY CYSTATIN FROM THE SOFT TICK JRNL TITL 3 ORNITHODOROS MOUBATA JRNL REF BIOCHEM.J. V. 429 103 2010 JRNL REFN ISSN 0264-6021 JRNL PMID 20545626 JRNL DOI 10.1042/BJ20100280 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 13588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 744 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 899 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.03000 REMARK 3 B22 (A**2) : -1.03000 REMARK 3 B33 (A**2) : 1.55000 REMARK 3 B12 (A**2) : -0.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.259 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.071 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1796 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2447 ; 1.256 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 7.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;39.682 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;16.687 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;23.203 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1355 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 721 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1185 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 121 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.145 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.042 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1123 ; 0.471 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1795 ; 0.796 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 767 ; 1.316 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 646 ; 2.053 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 107 4 REMARK 3 1 B 3 B 107 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 793 ; 0.37 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 793 ; 0.52 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 7 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1750 21.4310 -27.8700 REMARK 3 T TENSOR REMARK 3 T11: 0.4397 T22: 0.8912 REMARK 3 T33: 0.0834 T12: 0.0495 REMARK 3 T13: -0.0499 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 12.7450 L22: 15.4315 REMARK 3 L33: 29.7041 L12: 12.9644 REMARK 3 L13: -16.0188 L23: -11.6603 REMARK 3 S TENSOR REMARK 3 S11: -0.5918 S12: -0.6645 S13: 0.4191 REMARK 3 S21: 0.8912 S22: -1.1558 S23: -1.6898 REMARK 3 S31: -0.1556 S32: 4.0086 S33: 1.7477 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9700 15.1660 -39.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.2839 T22: 0.2287 REMARK 3 T33: -0.0030 T12: -0.0038 REMARK 3 T13: 0.0209 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 9.6345 L22: 2.8801 REMARK 3 L33: 3.3665 L12: 1.2795 REMARK 3 L13: -0.0272 L23: 0.5710 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.1986 S13: -0.8408 REMARK 3 S21: -0.0031 S22: -0.1088 S23: -0.1180 REMARK 3 S31: 0.3378 S32: 0.1927 S33: 0.1995 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): -34.6310 20.7890 -39.6070 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.3248 REMARK 3 T33: 0.0785 T12: -0.0498 REMARK 3 T13: -0.0039 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 6.4183 L22: 3.1656 REMARK 3 L33: 5.1320 L12: 1.5277 REMARK 3 L13: -2.5692 L23: -0.1931 REMARK 3 S TENSOR REMARK 3 S11: -0.1367 S12: 0.2503 S13: -0.0967 REMARK 3 S21: 0.2638 S22: -0.1374 S23: 0.3642 REMARK 3 S31: -0.0041 S32: -0.2557 S33: 0.2741 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1230 20.5190 -34.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.2011 T22: 0.2288 REMARK 3 T33: 0.0080 T12: 0.0015 REMARK 3 T13: 0.0450 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 4.3734 L22: 2.0752 REMARK 3 L33: 21.0675 L12: 0.4127 REMARK 3 L13: 4.2805 L23: -1.9883 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: 0.0252 S13: 0.1134 REMARK 3 S21: 0.0210 S22: 0.0450 S23: -0.1007 REMARK 3 S31: -0.7920 S32: 0.8042 S33: -0.1183 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): -31.5210 16.4410 -40.4710 REMARK 3 T TENSOR REMARK 3 T11: 0.2780 T22: 0.3053 REMARK 3 T33: 0.0134 T12: -0.0530 REMARK 3 T13: 0.0232 T23: -0.0940 REMARK 3 L TENSOR REMARK 3 L11: 7.8686 L22: 2.5483 REMARK 3 L33: 3.9588 L12: 0.0313 REMARK 3 L13: 3.7599 L23: -0.1007 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -0.0764 S13: -0.4595 REMARK 3 S21: -0.1321 S22: -0.0043 S23: 0.2932 REMARK 3 S31: 0.3074 S32: -0.3366 S33: -0.0061 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -27.4080 23.0510 -43.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.4334 REMARK 3 T33: -0.0049 T12: -0.0602 REMARK 3 T13: -0.0102 T23: -0.0506 REMARK 3 L TENSOR REMARK 3 L11: 4.3323 L22: 4.6290 REMARK 3 L33: 0.2739 L12: 0.5239 REMARK 3 L13: -1.0821 L23: -0.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.2663 S12: 0.5893 S13: 0.3362 REMARK 3 S21: -0.4434 S22: 0.0156 S23: 0.2803 REMARK 3 S31: -0.4357 S32: -0.1549 S33: 0.2507 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1180 10.7020 -22.8080 REMARK 3 T TENSOR REMARK 3 T11: 0.3016 T22: 0.2906 REMARK 3 T33: 0.0885 T12: -0.0374 REMARK 3 T13: 0.0938 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 7.6456 L22: 7.1563 REMARK 3 L33: 28.6555 L12: 5.3414 REMARK 3 L13: 4.7754 L23: -4.4165 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: 0.4856 S13: -0.5939 REMARK 3 S21: -0.0884 S22: 0.2591 S23: 0.4763 REMARK 3 S31: 0.7097 S32: -0.3882 S33: -0.1797 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): -25.3730 25.0830 -33.6780 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.3546 REMARK 3 T33: -0.0038 T12: -0.0168 REMARK 3 T13: 0.0358 T23: -0.1236 REMARK 3 L TENSOR REMARK 3 L11: 8.9758 L22: 21.0711 REMARK 3 L33: 21.8131 L12: -3.4939 REMARK 3 L13: 5.9230 L23: -7.6540 REMARK 3 S TENSOR REMARK 3 S11: -0.2319 S12: 0.0148 S13: 0.7143 REMARK 3 S21: -0.0293 S22: -0.1548 S23: -0.2450 REMARK 3 S31: -0.5309 S32: -0.2318 S33: 0.3867 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9640 17.9310 -11.5670 REMARK 3 T TENSOR REMARK 3 T11: 0.2900 T22: 0.4648 REMARK 3 T33: 0.3506 T12: 0.0154 REMARK 3 T13: -0.0291 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 15.9010 L22: 9.3442 REMARK 3 L33: 12.2037 L12: 2.8809 REMARK 3 L13: -5.3682 L23: -7.7433 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: -0.2809 S13: -0.9102 REMARK 3 S21: -0.0432 S22: -0.4804 S23: -2.1220 REMARK 3 S31: 0.0967 S32: 1.3084 S33: 0.5463 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 27 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6550 14.8960 -6.0070 REMARK 3 T TENSOR REMARK 3 T11: 0.2931 T22: 0.3983 REMARK 3 T33: 0.0251 T12: 0.0248 REMARK 3 T13: -0.0316 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 13.2166 L22: 5.3099 REMARK 3 L33: 4.9238 L12: 0.0084 REMARK 3 L13: -3.3207 L23: -1.6984 REMARK 3 S TENSOR REMARK 3 S11: -0.2703 S12: -1.6687 S13: -0.1637 REMARK 3 S21: 0.5696 S22: 0.0515 S23: -0.5221 REMARK 3 S31: -0.2945 S32: 0.5584 S33: 0.2189 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 40 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7320 13.6800 -14.2210 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.2617 REMARK 3 T33: 0.0479 T12: -0.0012 REMARK 3 T13: 0.0285 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 5.1881 L22: 10.9732 REMARK 3 L33: 5.1348 L12: 0.8423 REMARK 3 L13: -2.3362 L23: 1.0429 REMARK 3 S TENSOR REMARK 3 S11: -0.2903 S12: 0.3122 S13: -0.2023 REMARK 3 S21: -0.2711 S22: 0.1623 S23: 0.4805 REMARK 3 S31: 0.3415 S32: -0.4726 S33: 0.1280 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 41 B 51 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1890 17.6380 -11.7940 REMARK 3 T TENSOR REMARK 3 T11: 0.3280 T22: 0.3993 REMARK 3 T33: 0.0821 T12: 0.0626 REMARK 3 T13: -0.0233 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 4.3455 L22: 7.7069 REMARK 3 L33: 1.5875 L12: -0.6296 REMARK 3 L13: -2.0120 L23: -1.9434 REMARK 3 S TENSOR REMARK 3 S11: -0.3270 S12: -0.1702 S13: -0.7114 REMARK 3 S21: -0.4547 S22: 0.2966 S23: -0.7531 REMARK 3 S31: 0.2204 S32: 0.6479 S33: 0.0304 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 52 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1460 13.7220 -11.3900 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.1766 REMARK 3 T33: 0.0407 T12: 0.0683 REMARK 3 T13: 0.0193 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 4.4813 L22: 3.7153 REMARK 3 L33: 4.8498 L12: 1.2572 REMARK 3 L13: -1.3068 L23: 0.6053 REMARK 3 S TENSOR REMARK 3 S11: -0.2863 S12: -0.2007 S13: -0.7463 REMARK 3 S21: 0.1261 S22: 0.1212 S23: -0.0368 REMARK 3 S31: 0.2774 S32: -0.0429 S33: 0.1651 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): -17.1600 6.9270 -9.2400 REMARK 3 T TENSOR REMARK 3 T11: 0.3741 T22: 0.2269 REMARK 3 T33: 0.2365 T12: 0.1041 REMARK 3 T13: 0.0983 T23: 0.1278 REMARK 3 L TENSOR REMARK 3 L11: 9.9652 L22: 6.5895 REMARK 3 L33: 5.0081 L12: -0.1599 REMARK 3 L13: -4.0662 L23: 3.3791 REMARK 3 S TENSOR REMARK 3 S11: -0.3904 S12: -0.4787 S13: -1.3807 REMARK 3 S21: 0.5203 S22: 0.0063 S23: 0.1942 REMARK 3 S31: 0.9268 S32: -0.0724 S33: 0.3841 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0040 26.4970 -7.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.2638 T22: 0.3018 REMARK 3 T33: 0.0446 T12: 0.0581 REMARK 3 T13: 0.0246 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 4.3509 L22: 12.1821 REMARK 3 L33: 7.4304 L12: 4.2154 REMARK 3 L13: 2.2254 L23: 8.5384 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.4802 S13: 0.2737 REMARK 3 S21: 0.3208 S22: -0.0993 S23: 0.3440 REMARK 3 S31: 0.0826 S32: -0.1155 S33: 0.1075 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 102 B 110 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3920 18.2880 -19.8210 REMARK 3 T TENSOR REMARK 3 T11: 0.1647 T22: 0.2986 REMARK 3 T33: 0.0048 T12: -0.0169 REMARK 3 T13: 0.0621 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 12.6448 L22: 17.8696 REMARK 3 L33: 10.5697 L12: 7.5225 REMARK 3 L13: 2.3382 L23: 4.6069 REMARK 3 S TENSOR REMARK 3 S11: -0.6501 S12: 1.1795 S13: -0.4939 REMARK 3 S21: -0.7737 S22: 0.6045 S23: -0.4701 REMARK 3 S31: 0.0969 S32: 0.3624 S33: 0.0456 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14369 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3LH4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 1.5M LITHIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.66467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.32933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 89.32933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.66467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 132 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 SER A 2 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 THR B 1 REMARK 465 SER B 2 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 HIS B 113 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 110 CB CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 110 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 49 -146.55 -124.82 REMARK 500 ASP A 81 102.11 -162.76 REMARK 500 VAL B 49 -144.27 -127.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 118 DBREF 3L0R A 1 109 UNP Q6QD55 Q6QD55_ORNMO 20 128 DBREF 3L0R B 1 109 UNP Q6QD55 Q6QD55_ORNMO 20 128 SEQADV 3L0R HIS A 110 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS A 111 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS A 112 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS A 113 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS A 114 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS A 115 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS B 110 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS B 111 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS B 112 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS B 113 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS B 114 UNP Q6QD55 EXPRESSION TAG SEQADV 3L0R HIS B 115 UNP Q6QD55 EXPRESSION TAG SEQRES 1 A 115 THR SER ILE PRO GLY GLY TRP THR ARG GLN ASP PRO THR SEQRES 2 A 115 GLU ALA ARG PHE LEU GLU LEU ALA HIS PHE ALA THR SER SEQRES 3 A 115 SER GLN THR GLU GLY ARG GLU PHE TYR ASP THR VAL VAL SEQRES 4 A 115 THR VAL LYS GLU VAL GLU THR GLN VAL VAL ALA GLY MET SEQRES 5 A 115 ASN TYR LYS LEU THR ILE GLU ILE SER PRO SER VAL CYS SEQRES 6 A 115 LYS ILE GLY GLU VAL GLN TYR SER ALA GLU GLN CYS VAL SEQRES 7 A 115 PRO LYS ASP ALA GLN GLN LYS SER THR CYS VAL ALA VAL SEQRES 8 A 115 ILE TYR HIS VAL PRO TRP GLN ASN GLN LYS SER VAL THR SEQRES 9 A 115 SER TYR ARG CYS GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 115 THR SER ILE PRO GLY GLY TRP THR ARG GLN ASP PRO THR SEQRES 2 B 115 GLU ALA ARG PHE LEU GLU LEU ALA HIS PHE ALA THR SER SEQRES 3 B 115 SER GLN THR GLU GLY ARG GLU PHE TYR ASP THR VAL VAL SEQRES 4 B 115 THR VAL LYS GLU VAL GLU THR GLN VAL VAL ALA GLY MET SEQRES 5 B 115 ASN TYR LYS LEU THR ILE GLU ILE SER PRO SER VAL CYS SEQRES 6 B 115 LYS ILE GLY GLU VAL GLN TYR SER ALA GLU GLN CYS VAL SEQRES 7 B 115 PRO LYS ASP ALA GLN GLN LYS SER THR CYS VAL ALA VAL SEQRES 8 B 115 ILE TYR HIS VAL PRO TRP GLN ASN GLN LYS SER VAL THR SEQRES 9 B 115 SER TYR ARG CYS GLU HIS HIS HIS HIS HIS HIS HET CL A 116 1 HET GOL A 117 6 HET CL B 116 1 HET GOL B 117 6 HET GOL B 118 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 2(CL 1-) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *112(H2 O) HELIX 1 1 GLU A 14 SER A 26 1 13 HELIX 2 2 PRO A 96 ASN A 99 5 4 HELIX 3 3 GLU B 14 SER B 27 1 14 HELIX 4 4 PRO B 96 ASN B 99 5 4 SHEET 1 A 5 THR A 8 GLN A 10 0 SHEET 2 A 5 PHE A 34 VAL A 48 -1 O THR A 46 N THR A 8 SHEET 3 A 5 MET A 52 LYS A 66 -1 O LYS A 55 N GLU A 45 SHEET 4 A 5 SER A 86 VAL A 95 -1 O SER A 86 N ILE A 60 SHEET 5 A 5 GLN A 100 HIS A 110 -1 O GLN A 100 N VAL A 95 SHEET 1 B 5 THR B 8 GLN B 10 0 SHEET 2 B 5 PHE B 34 VAL B 48 -1 O VAL B 44 N GLN B 10 SHEET 3 B 5 MET B 52 LYS B 66 -1 O SER B 63 N TYR B 35 SHEET 4 B 5 SER B 86 VAL B 95 -1 O ALA B 90 N LEU B 56 SHEET 5 B 5 GLN B 100 ARG B 107 -1 O GLN B 100 N VAL B 95 SSBOND 1 CYS A 65 CYS A 77 1555 1555 2.06 SSBOND 2 CYS A 88 CYS A 108 1555 1555 2.06 SSBOND 3 CYS B 65 CYS B 77 1555 1555 2.08 SSBOND 4 CYS B 88 CYS B 108 1555 1555 2.04 SITE 1 AC1 1 TRP A 7 SITE 1 AC2 2 ARG A 16 HIS A 94 SITE 1 AC3 3 HIS B 94 ASN B 99 LYS B 101 SITE 1 AC4 3 THR B 29 GLU B 30 GLY B 31 CRYST1 69.805 69.805 133.994 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014326 0.008271 0.000000 0.00000 SCALE2 0.000000 0.016542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007463 0.00000