HEADER HYDROLASE 14-DEC-09 3L1U TITLE CRYSTAL STRUCTURE OF CALCIUM-BOUND GMHB FROM E. COLI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: D,D-HEPTOSE 1,7-BISPHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-GLYCERO-D-MANNO-HEPTOSE 1,7-BISPHOSPHATE PHOSPHATASE; COMPND 5 EC: 3.1.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: B0200, GMHB, JW0196, YAED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS LPS BIOSYNTHESIS, SUGAR PHOSPHATASE, HEPTOSE, ZINC, CARBOHYDRATE KEYWDS 2 METABOLISM, CYTOPLASM, HYDROLASE, LIPOPOLYSACCHARIDE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.N.SUGIMAN-MARANGOS,M.S.JUNOP REVDAT 4 06-SEP-23 3L1U 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3L1U 1 REMARK REVDAT 2 16-FEB-10 3L1U 1 JRNL REVDAT 1 05-JAN-10 3L1U 0 JRNL AUTH P.L.TAYLOR,S.SUGIMAN-MARANGOS,K.ZHANG,M.A.VALVANO, JRNL AUTH 2 G.D.WRIGHT,M.S.JUNOP JRNL TITL STRUCTURAL AND KINETIC CHARACTERIZATION OF THE LPS JRNL TITL 2 BIOSYNTHETIC ENZYME D-ALPHA,BETA-D-HEPTOSE-1,7-BISPHOSPHATE JRNL TITL 3 PHOSPHATASE (GMHB) FROM ESCHERICHIA COLI. JRNL REF BIOCHEMISTRY V. 49 1033 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20050699 JRNL DOI 10.1021/BI901780J REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 24872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5804 - 4.6932 0.90 1643 141 0.2150 0.2139 REMARK 3 2 4.6932 - 3.7256 0.96 1654 141 0.1812 0.1929 REMARK 3 3 3.7256 - 3.2548 0.97 1651 142 0.1912 0.2327 REMARK 3 4 3.2548 - 2.9573 0.97 1656 142 0.2290 0.2463 REMARK 3 5 2.9573 - 2.7454 0.98 1660 140 0.2625 0.2587 REMARK 3 6 2.7454 - 2.5835 0.98 1653 143 0.2484 0.3068 REMARK 3 7 2.5835 - 2.4542 0.99 1658 141 0.2417 0.2690 REMARK 3 8 2.4542 - 2.3473 0.99 1660 141 0.2378 0.2427 REMARK 3 9 2.3473 - 2.2570 0.99 1627 141 0.2517 0.2900 REMARK 3 10 2.2570 - 2.1791 0.99 1651 143 0.2545 0.2677 REMARK 3 11 2.1791 - 2.1110 0.99 1644 143 0.2632 0.2661 REMARK 3 12 2.1110 - 2.0506 0.98 1626 139 0.2671 0.3312 REMARK 3 13 2.0506 - 1.9966 0.97 1608 136 0.3162 0.3605 REMARK 3 14 1.9966 - 1.9500 0.92 1516 132 0.3567 0.3637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 40.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2921 REMARK 3 ANGLE : 1.012 3966 REMARK 3 CHIRALITY : 0.052 438 REMARK 3 PLANARITY : 0.003 521 REMARK 3 DIHEDRAL : 18.776 1060 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : BLUE CONFOCAL OPTICS MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.030 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.91 REMARK 200 R MERGE FOR SHELL (I) : 0.33100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2GMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M TRIS, 0.005M DTT, REMARK 280 0.025M SODIUM CHLORIDE, 0.005M CALCIUM CHLORIDE, 11% GLYCEROL , REMARK 280 PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.27650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.61800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.01550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.61800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.27650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.01550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER AS JUDGED BY GEL REMARK 300 FILTRATION CHROMATOGRAPHY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 465 GLN A 206 REMARK 465 GLN A 207 REMARK 465 LYS A 208 REMARK 465 PRO A 209 REMARK 465 ALA A 210 REMARK 465 GLN A 211 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 MET B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 206 REMARK 465 GLN B 207 REMARK 465 LYS B 208 REMARK 465 PRO B 209 REMARK 465 ALA B 210 REMARK 465 GLN B 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 262 O HOH A 305 1.86 REMARK 500 O HOH A 277 O HOH A 397 1.88 REMARK 500 O GLY A 178 O HOH A 330 1.91 REMARK 500 OD1 ASP B 105 O HOH B 369 1.92 REMARK 500 O HOH A 229 O HOH A 252 1.92 REMARK 500 O HOH A 336 O HOH A 345 1.95 REMARK 500 N SER B 24 O HOH B 288 1.98 REMARK 500 O HOH A 275 O HOH A 339 1.99 REMARK 500 O HOH A 351 O HOH A 374 1.99 REMARK 500 OE2 GLU B 89 O HOH B 284 2.01 REMARK 500 O HOH A 360 O HOH A 391 2.02 REMARK 500 O HOH A 283 O HOH A 331 2.02 REMARK 500 ND1 HIS B 133 O HOH B 226 2.04 REMARK 500 O HOH A 300 O HOH A 344 2.04 REMARK 500 ND1 HIS A 40 O HOH A 244 2.05 REMARK 500 OE1 GLU B 159 O HOH B 348 2.06 REMARK 500 O HOH A 304 O HOH A 394 2.06 REMARK 500 O HOH B 267 O HOH B 302 2.06 REMARK 500 OH TYR B 152 O HOH B 278 2.06 REMARK 500 O HOH A 275 O HOH A 276 2.08 REMARK 500 O HOH B 218 O HOH B 289 2.10 REMARK 500 O HOH B 298 O HOH B 325 2.15 REMARK 500 OD2 ASP A 103 O HOH A 377 2.18 REMARK 500 O HOH A 293 O HOH A 366 2.18 REMARK 500 O HOH B 260 O HOH B 316 2.18 REMARK 500 O HOH A 318 O HOH A 337 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 299 O HOH A 309 4455 2.05 REMARK 500 O HOH A 291 O HOH A 299 4555 2.17 REMARK 500 O HOH A 245 O HOH B 369 3645 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 32 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 32 -79.35 -103.21 REMARK 500 HIS A 44 -0.73 -142.27 REMARK 500 GLN A 125 155.32 179.10 REMARK 500 ARG B 32 -78.02 -109.45 REMARK 500 THR B 35 -46.38 -131.00 REMARK 500 HIS B 44 -5.01 -141.85 REMARK 500 GLN B 125 151.82 173.52 REMARK 500 ARG B 176 30.60 -95.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 213 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD2 REMARK 620 2 ASP A 33 O 73.1 REMARK 620 3 ASP A 156 OD1 73.6 95.5 REMARK 620 4 HOH A 353 O 88.5 161.3 81.4 REMARK 620 5 HOH A 354 O 143.8 83.6 81.7 113.9 REMARK 620 6 HOH A 355 O 132.4 100.8 152.5 89.6 78.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 112 SG REMARK 620 2 HIS A 114 ND1 113.3 REMARK 620 3 CYS A 127 SG 105.2 99.2 REMARK 620 4 CYS A 129 SG 127.6 101.2 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 213 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 31 OD2 REMARK 620 2 ASP B 33 O 74.6 REMARK 620 3 ASP B 156 OD1 74.6 98.0 REMARK 620 4 HOH B 283 O 126.3 96.0 157.6 REMARK 620 5 HOH B 304 O 87.5 162.0 78.5 93.2 REMARK 620 6 HOH B 351 O 140.5 76.6 83.4 82.9 120.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 112 SG REMARK 620 2 CYS B 127 SG 101.1 REMARK 620 3 CYS B 129 SG 117.5 105.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L1V RELATED DB: PDB DBREF 3L1U A 21 211 UNP P63228 GMHB_ECOLI 1 191 DBREF 3L1U B 21 211 UNP P63228 GMHB_ECOLI 1 191 SEQADV 3L1U MET A 1 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY A 2 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER A 3 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER A 4 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 5 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 6 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 7 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 8 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 9 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 10 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER A 11 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER A 12 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY A 13 UNP P63228 EXPRESSION TAG SEQADV 3L1U LEU A 14 UNP P63228 EXPRESSION TAG SEQADV 3L1U VAL A 15 UNP P63228 EXPRESSION TAG SEQADV 3L1U PRO A 16 UNP P63228 EXPRESSION TAG SEQADV 3L1U ARG A 17 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY A 18 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER A 19 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS A 20 UNP P63228 EXPRESSION TAG SEQADV 3L1U MET B 1 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY B 2 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER B 3 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER B 4 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 5 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 6 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 7 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 8 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 9 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 10 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER B 11 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER B 12 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY B 13 UNP P63228 EXPRESSION TAG SEQADV 3L1U LEU B 14 UNP P63228 EXPRESSION TAG SEQADV 3L1U VAL B 15 UNP P63228 EXPRESSION TAG SEQADV 3L1U PRO B 16 UNP P63228 EXPRESSION TAG SEQADV 3L1U ARG B 17 UNP P63228 EXPRESSION TAG SEQADV 3L1U GLY B 18 UNP P63228 EXPRESSION TAG SEQADV 3L1U SER B 19 UNP P63228 EXPRESSION TAG SEQADV 3L1U HIS B 20 UNP P63228 EXPRESSION TAG SEQRES 1 A 211 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 211 LEU VAL PRO ARG GLY SER HIS MET ALA LYS SER VAL PRO SEQRES 3 A 211 ALA ILE PHE LEU ASP ARG ASP GLY THR ILE ASN VAL ASP SEQRES 4 A 211 HIS GLY TYR VAL HIS GLU ILE ASP ASN PHE GLU PHE ILE SEQRES 5 A 211 ASP GLY VAL ILE ASP ALA MET ARG GLU LEU LYS LYS MET SEQRES 6 A 211 GLY PHE ALA LEU VAL VAL VAL THR ASN GLN SER GLY ILE SEQRES 7 A 211 ALA ARG GLY LYS PHE THR GLU ALA GLN PHE GLU THR LEU SEQRES 8 A 211 THR GLU TRP MET ASP TRP SER LEU ALA ASP ARG ASP VAL SEQRES 9 A 211 ASP LEU ASP GLY ILE TYR TYR CYS PRO HIS HIS PRO GLN SEQRES 10 A 211 GLY SER VAL GLU GLU PHE ARG GLN VAL CYS ASP CYS ARG SEQRES 11 A 211 LYS PRO HIS PRO GLY MET LEU LEU SER ALA ARG ASP TYR SEQRES 12 A 211 LEU HIS ILE ASP MET ALA ALA SER TYR MET VAL GLY ASP SEQRES 13 A 211 LYS LEU GLU ASP MET GLN ALA ALA VAL ALA ALA ASN VAL SEQRES 14 A 211 GLY THR LYS VAL LEU VAL ARG THR GLY LYS PRO ILE THR SEQRES 15 A 211 PRO GLU ALA GLU ASN ALA ALA ASP TRP VAL LEU ASN SER SEQRES 16 A 211 LEU ALA ASP LEU PRO GLN ALA ILE LYS LYS GLN GLN LYS SEQRES 17 A 211 PRO ALA GLN SEQRES 1 B 211 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 211 LEU VAL PRO ARG GLY SER HIS MET ALA LYS SER VAL PRO SEQRES 3 B 211 ALA ILE PHE LEU ASP ARG ASP GLY THR ILE ASN VAL ASP SEQRES 4 B 211 HIS GLY TYR VAL HIS GLU ILE ASP ASN PHE GLU PHE ILE SEQRES 5 B 211 ASP GLY VAL ILE ASP ALA MET ARG GLU LEU LYS LYS MET SEQRES 6 B 211 GLY PHE ALA LEU VAL VAL VAL THR ASN GLN SER GLY ILE SEQRES 7 B 211 ALA ARG GLY LYS PHE THR GLU ALA GLN PHE GLU THR LEU SEQRES 8 B 211 THR GLU TRP MET ASP TRP SER LEU ALA ASP ARG ASP VAL SEQRES 9 B 211 ASP LEU ASP GLY ILE TYR TYR CYS PRO HIS HIS PRO GLN SEQRES 10 B 211 GLY SER VAL GLU GLU PHE ARG GLN VAL CYS ASP CYS ARG SEQRES 11 B 211 LYS PRO HIS PRO GLY MET LEU LEU SER ALA ARG ASP TYR SEQRES 12 B 211 LEU HIS ILE ASP MET ALA ALA SER TYR MET VAL GLY ASP SEQRES 13 B 211 LYS LEU GLU ASP MET GLN ALA ALA VAL ALA ALA ASN VAL SEQRES 14 B 211 GLY THR LYS VAL LEU VAL ARG THR GLY LYS PRO ILE THR SEQRES 15 B 211 PRO GLU ALA GLU ASN ALA ALA ASP TRP VAL LEU ASN SER SEQRES 16 B 211 LEU ALA ASP LEU PRO GLN ALA ILE LYS LYS GLN GLN LYS SEQRES 17 B 211 PRO ALA GLN HET ZN A 212 1 HET CA A 213 1 HET ZN B 212 1 HET CA B 213 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *345(H2 O) HELIX 1 1 GLU A 45 PHE A 49 5 5 HELIX 2 2 GLY A 54 MET A 65 1 12 HELIX 3 3 THR A 84 ASP A 101 1 18 HELIX 4 4 VAL A 120 ARG A 124 5 5 HELIX 5 5 PRO A 134 HIS A 145 1 12 HELIX 6 6 ASP A 147 ALA A 150 5 4 HELIX 7 7 LYS A 157 ALA A 167 1 11 HELIX 8 8 THR A 182 ALA A 189 1 8 HELIX 9 9 SER A 195 ALA A 197 5 3 HELIX 10 10 ASP A 198 LYS A 205 1 8 HELIX 11 11 GLU B 45 PHE B 49 5 5 HELIX 12 12 GLY B 54 MET B 65 1 12 HELIX 13 13 THR B 84 ARG B 102 1 19 HELIX 14 14 VAL B 120 ARG B 124 5 5 HELIX 15 15 PRO B 134 HIS B 145 1 12 HELIX 16 16 ASP B 147 ALA B 150 5 4 HELIX 17 17 LYS B 157 ASN B 168 1 12 HELIX 18 18 THR B 182 ALA B 189 1 8 HELIX 19 19 SER B 195 ALA B 197 5 3 HELIX 20 20 ASP B 198 LYS B 205 1 8 SHEET 1 A 6 GLY A 108 CYS A 112 0 SHEET 2 A 6 ALA A 68 ASN A 74 1 N VAL A 71 O TYR A 110 SHEET 3 A 6 ALA A 27 LEU A 30 1 N LEU A 30 O VAL A 70 SHEET 4 A 6 TYR A 152 GLY A 155 1 O TYR A 152 N PHE A 29 SHEET 5 A 6 THR A 171 VAL A 175 1 O VAL A 173 N MET A 153 SHEET 6 A 6 TRP A 191 LEU A 193 1 O TRP A 191 N LEU A 174 SHEET 1 B 6 GLY B 108 CYS B 112 0 SHEET 2 B 6 ALA B 68 ASN B 74 1 N VAL B 71 O TYR B 110 SHEET 3 B 6 ALA B 27 LEU B 30 1 N LEU B 30 O VAL B 70 SHEET 4 B 6 TYR B 152 GLY B 155 1 O TYR B 152 N PHE B 29 SHEET 5 B 6 THR B 171 VAL B 175 1 O VAL B 173 N MET B 153 SHEET 6 B 6 TRP B 191 LEU B 193 1 O TRP B 191 N LEU B 174 LINK OD2 ASP A 31 CA CA A 213 1555 1555 2.51 LINK O ASP A 33 CA CA A 213 1555 1555 2.53 LINK SG CYS A 112 ZN ZN A 212 1555 1555 2.43 LINK ND1 HIS A 114 ZN ZN A 212 1555 1555 2.12 LINK SG CYS A 127 ZN ZN A 212 1555 1555 2.44 LINK SG CYS A 129 ZN ZN A 212 1555 1555 2.33 LINK OD1 ASP A 156 CA CA A 213 1555 1555 2.53 LINK CA CA A 213 O HOH A 353 1555 1555 2.59 LINK CA CA A 213 O HOH A 354 1555 1555 2.52 LINK CA CA A 213 O HOH A 355 1555 1555 2.54 LINK OD2 ASP B 31 CA CA B 213 1555 1555 2.64 LINK O ASP B 33 CA CA B 213 1555 1555 2.48 LINK SG CYS B 112 ZN ZN B 212 1555 1555 2.48 LINK SG CYS B 127 ZN ZN B 212 1555 1555 2.43 LINK SG CYS B 129 ZN ZN B 212 1555 1555 2.44 LINK OD1 ASP B 156 CA CA B 213 1555 1555 2.58 LINK CA CA B 213 O HOH B 283 1555 1555 2.56 LINK CA CA B 213 O HOH B 304 1555 1555 2.68 LINK CA CA B 213 O HOH B 351 1555 1555 2.58 CISPEP 1 LYS A 131 PRO A 132 0 10.73 CISPEP 2 LYS B 131 PRO B 132 0 11.17 SITE 1 AC1 5 CYS A 112 HIS A 114 CYS A 127 CYS A 129 SITE 2 AC1 5 ARG A 130 SITE 1 AC2 6 ASP A 31 ASP A 33 ASP A 156 HOH A 353 SITE 2 AC2 6 HOH A 354 HOH A 355 SITE 1 AC3 4 CYS B 112 HIS B 114 CYS B 127 CYS B 129 SITE 1 AC4 6 ASP B 31 ASP B 33 ASP B 156 HOH B 283 SITE 2 AC4 6 HOH B 304 HOH B 351 CRYST1 50.553 64.031 105.236 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009502 0.00000