HEADER LIGASE 16-DEC-09 3L2Z TITLE CRYSTAL STRUCTURE OF HYDRATED BIOTIN PROTEIN LIGASE FROM M. TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIRA BIFUNCTIONAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BIOTIN PROTEIN LIGASE; COMPND 5 EC: 6.3.4.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: BIRA, MT3379, RV3279C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PASK-IBA43PLUS KEYWDS BIRA, HYDRATED STRUCTURE, DISORDERED LIGAND BINDING LOOPS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR V.GUPTA,R.K.GUPTA,G.KHARE,D.M.SALUNKE,A.K.TYAGI REVDAT 3 01-NOV-23 3L2Z 1 REMARK REVDAT 2 01-NOV-17 3L2Z 1 REMARK REVDAT 1 09-MAR-10 3L2Z 0 JRNL AUTH V.GUPTA,R.K.GUPTA,G.KHARE,D.M.SALUNKE,A.SUROLIA,A.K.TYAGI JRNL TITL STRUCTURAL ORDERING OF DISORDERED LIGAND-BINDING LOOPS OF JRNL TITL 2 BIOTIN PROTEIN LIGASE INTO ACTIVE CONFORMATIONS AS A JRNL TITL 3 CONSEQUENCE OF DEHYDRATION. JRNL REF PLOS ONE V. 5 E9222 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20169168 JRNL DOI 10.1371/JOURNAL.PONE.0009222 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 13373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.1264 - 5.8979 0.97 1246 138 0.1547 0.1992 REMARK 3 2 5.8979 - 4.7394 0.99 1231 137 0.1669 0.1700 REMARK 3 3 4.7394 - 4.1578 0.99 1208 134 0.1363 0.1758 REMARK 3 4 4.1578 - 3.7856 0.99 1200 133 0.1534 0.2380 REMARK 3 5 3.7856 - 3.5188 1.00 1210 134 0.1715 0.2450 REMARK 3 6 3.5188 - 3.3142 1.00 1178 131 0.1811 0.2623 REMARK 3 7 3.3142 - 3.1501 1.00 1199 135 0.1887 0.2931 REMARK 3 8 3.1501 - 3.0144 1.00 1192 131 0.2068 0.2556 REMARK 3 9 3.0144 - 2.8994 1.00 1184 132 0.2199 0.3091 REMARK 3 10 2.8994 - 2.8001 1.00 1188 132 0.2450 0.3357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 34.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.660 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.48860 REMARK 3 B22 (A**2) : -6.52850 REMARK 3 B33 (A**2) : 4.03990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3586 REMARK 3 ANGLE : 1.036 4896 REMARK 3 CHIRALITY : 0.058 600 REMARK 3 PLANARITY : 0.005 641 REMARK 3 DIHEDRAL : 19.316 1286 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8088 REMARK 200 MONOCHROMATOR : SI 111, HORIZONTALLY FOCUSSING REMARK 200 OPTICS : BENDING MAGNET REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2CGH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-16% PEG4000, PEG8000, 0.1M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.84650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.87600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.38600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.87600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.84650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.38600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 65 REMARK 465 GLY A 66 REMARK 465 ARG A 67 REMARK 465 GLY A 68 REMARK 465 ARG A 69 REMARK 465 HIS A 70 REMARK 465 GLY A 71 REMARK 465 ARG A 72 REMARK 465 GLY A 73 REMARK 465 TRP A 74 REMARK 465 ALA A 75 REMARK 465 ALA A 76 REMARK 465 ALA A 162 REMARK 465 PRO A 163 REMARK 465 GLU A 164 REMARK 465 GLU A 165 REMARK 465 VAL A 166 REMARK 465 ASP A 167 REMARK 465 ARG A 266 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ARG B 4 REMARK 465 ASP B 5 REMARK 465 ARG B 6 REMARK 465 LEU B 7 REMARK 465 GLY B 66 REMARK 465 ARG B 67 REMARK 465 GLY B 68 REMARK 465 ARG B 69 REMARK 465 HIS B 70 REMARK 465 GLY B 71 REMARK 465 ARG B 72 REMARK 465 GLY B 73 REMARK 465 TRP B 74 REMARK 465 ALA B 75 REMARK 465 ALA B 76 REMARK 465 PRO B 163 REMARK 465 GLU B 164 REMARK 465 GLU B 165 REMARK 465 VAL B 166 REMARK 465 ASP B 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 CD NE CZ NH1 NH2 REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 89 NE CZ NH1 NH2 REMARK 470 VAL A 119 CG1 CG2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 ARG A 135 CD NE CZ NH1 NH2 REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 ARG B 135 NE CZ NH1 NH2 REMARK 470 GLN B 161 CG CD OE1 NE2 REMARK 470 ASP B 169 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 17 O LEU B 30 2.01 REMARK 500 OD2 ASP B 241 N GLN B 243 2.14 REMARK 500 OD1 ASP B 241 NE ARG B 245 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD ARG B 185 O HOH A 277 3545 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 247 CB CYS A 247 SG -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 138 CD - CE - NZ ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 102.56 42.10 REMARK 500 ALA A 147 85.62 -158.44 REMARK 500 ARG B 79 0.94 82.58 REMARK 500 ALA B 147 76.52 -154.74 REMARK 500 ARG B 245 -152.97 -77.82 REMARK 500 LEU B 246 87.15 -159.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 238 0.29 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L1A RELATED DB: PDB REMARK 900 DEHYDRATED STRUCTURE DBREF 3L2Z A 1 266 UNP P96884 P96884_MYCTU 1 266 DBREF 3L2Z B 1 266 UNP P96884 P96884_MYCTU 1 266 SEQRES 1 A 266 MET THR ASP ARG ASP ARG LEU ARG PRO PRO LEU ASP GLU SEQRES 2 A 266 ARG SER LEU ARG ASP GLN LEU ILE GLY ALA GLY SER GLY SEQRES 3 A 266 TRP ARG GLN LEU ASP VAL VAL ALA GLN THR GLY SER THR SEQRES 4 A 266 ASN ALA ASP LEU LEU ALA ARG ALA ALA SER GLY ALA ASP SEQRES 5 A 266 ILE ASP GLY VAL VAL LEU ILE ALA GLU HIS GLN THR ALA SEQRES 6 A 266 GLY ARG GLY ARG HIS GLY ARG GLY TRP ALA ALA THR ALA SEQRES 7 A 266 ARG ALA GLN ILE ILE LEU SER VAL GLY VAL ARG VAL VAL SEQRES 8 A 266 ASP VAL PRO VAL GLN ALA TRP GLY TRP LEU SER LEU ALA SEQRES 9 A 266 ALA GLY LEU ALA VAL LEU ASP SER VAL ALA PRO LEU ILE SEQRES 10 A 266 ALA VAL PRO PRO ALA GLU THR GLY LEU LYS TRP PRO ASN SEQRES 11 A 266 ASP VAL LEU ALA ARG GLY GLY LYS LEU ALA GLY ILE LEU SEQRES 12 A 266 ALA GLU VAL ALA GLN PRO PHE VAL VAL LEU GLY VAL GLY SEQRES 13 A 266 LEU ASN VAL THR GLN ALA PRO GLU GLU VAL ASP PRO ASP SEQRES 14 A 266 ALA THR SER LEU LEU ASP LEU GLY VAL ALA ALA PRO ASP SEQRES 15 A 266 ARG ASN ARG ILE ALA SER ARG LEU LEU ARG GLU LEU GLU SEQRES 16 A 266 ALA ARG ILE ILE GLN TRP ARG ASN ALA ASN PRO GLN LEU SEQRES 17 A 266 ALA ALA ASP TYR ARG ALA ARG SER LEU THR ILE GLY SER SEQRES 18 A 266 ARG VAL ARG VAL GLU LEU PRO GLY GLY GLN ASP VAL VAL SEQRES 19 A 266 GLY ILE ALA ARG ASP ILE ASP ASP GLN GLY ARG LEU CYS SEQRES 20 A 266 LEU ASP VAL GLY GLY ARG THR VAL VAL VAL SER ALA GLY SEQRES 21 A 266 ASP VAL VAL HIS LEU ARG SEQRES 1 B 266 MET THR ASP ARG ASP ARG LEU ARG PRO PRO LEU ASP GLU SEQRES 2 B 266 ARG SER LEU ARG ASP GLN LEU ILE GLY ALA GLY SER GLY SEQRES 3 B 266 TRP ARG GLN LEU ASP VAL VAL ALA GLN THR GLY SER THR SEQRES 4 B 266 ASN ALA ASP LEU LEU ALA ARG ALA ALA SER GLY ALA ASP SEQRES 5 B 266 ILE ASP GLY VAL VAL LEU ILE ALA GLU HIS GLN THR ALA SEQRES 6 B 266 GLY ARG GLY ARG HIS GLY ARG GLY TRP ALA ALA THR ALA SEQRES 7 B 266 ARG ALA GLN ILE ILE LEU SER VAL GLY VAL ARG VAL VAL SEQRES 8 B 266 ASP VAL PRO VAL GLN ALA TRP GLY TRP LEU SER LEU ALA SEQRES 9 B 266 ALA GLY LEU ALA VAL LEU ASP SER VAL ALA PRO LEU ILE SEQRES 10 B 266 ALA VAL PRO PRO ALA GLU THR GLY LEU LYS TRP PRO ASN SEQRES 11 B 266 ASP VAL LEU ALA ARG GLY GLY LYS LEU ALA GLY ILE LEU SEQRES 12 B 266 ALA GLU VAL ALA GLN PRO PHE VAL VAL LEU GLY VAL GLY SEQRES 13 B 266 LEU ASN VAL THR GLN ALA PRO GLU GLU VAL ASP PRO ASP SEQRES 14 B 266 ALA THR SER LEU LEU ASP LEU GLY VAL ALA ALA PRO ASP SEQRES 15 B 266 ARG ASN ARG ILE ALA SER ARG LEU LEU ARG GLU LEU GLU SEQRES 16 B 266 ALA ARG ILE ILE GLN TRP ARG ASN ALA ASN PRO GLN LEU SEQRES 17 B 266 ALA ALA ASP TYR ARG ALA ARG SER LEU THR ILE GLY SER SEQRES 18 B 266 ARG VAL ARG VAL GLU LEU PRO GLY GLY GLN ASP VAL VAL SEQRES 19 B 266 GLY ILE ALA ARG ASP ILE ASP ASP GLN GLY ARG LEU CYS SEQRES 20 B 266 LEU ASP VAL GLY GLY ARG THR VAL VAL VAL SER ALA GLY SEQRES 21 B 266 ASP VAL VAL HIS LEU ARG FORMUL 3 HOH *26(H2 O) HELIX 1 1 ASP A 12 ILE A 21 1 10 HELIX 2 2 SER A 38 SER A 49 1 12 HELIX 3 3 PRO A 94 GLY A 99 5 6 HELIX 4 4 TRP A 100 ALA A 114 1 15 HELIX 5 5 PRO A 120 ALA A 122 5 3 HELIX 6 6 ASP A 182 ASN A 203 1 22 HELIX 7 7 ASN A 205 ARG A 215 1 11 HELIX 8 8 ASP B 12 ILE B 21 1 10 HELIX 9 9 SER B 38 SER B 49 1 12 HELIX 10 10 PRO B 94 TRP B 98 5 5 HELIX 11 11 GLY B 99 ALA B 114 1 16 HELIX 12 12 PRO B 115 ILE B 117 5 3 HELIX 13 13 LEU B 173 GLY B 177 5 5 HELIX 14 14 ASP B 182 ASN B 203 1 22 HELIX 15 15 ASN B 205 ARG B 215 1 11 SHEET 1 A 7 GLN A 29 VAL A 33 0 SHEET 2 A 7 VAL A 56 ALA A 60 1 O ILE A 59 N ASP A 31 SHEET 3 A 7 GLN A 81 ARG A 89 -1 O SER A 85 N LEU A 58 SHEET 4 A 7 PHE A 150 ASN A 158 -1 O VAL A 155 N LEU A 84 SHEET 5 A 7 GLY A 137 ALA A 147 -1 N ALA A 147 O PHE A 150 SHEET 6 A 7 ASP A 131 ALA A 134 -1 N ALA A 134 O GLY A 137 SHEET 7 A 7 THR A 124 LYS A 127 -1 N LYS A 127 O ASP A 131 SHEET 1 B10 VAL A 262 HIS A 264 0 SHEET 2 B10 ARG A 222 LEU A 227 -1 N ARG A 224 O VAL A 263 SHEET 3 B10 GLN A 231 ILE A 240 -1 O GLN A 231 N LEU A 227 SHEET 4 B10 LEU A 246 VAL A 250 -1 O CYS A 247 N ARG A 238 SHEET 5 B10 ARG A 253 VAL A 257 -1 O VAL A 255 N LEU A 248 SHEET 6 B10 ARG B 253 VAL B 257 -1 O VAL B 256 N VAL A 256 SHEET 7 B10 CYS B 247 VAL B 250 -1 N VAL B 250 O ARG B 253 SHEET 8 B10 GLN B 231 ASP B 239 -1 N ARG B 238 O CYS B 247 SHEET 9 B10 ARG B 222 LEU B 227 -1 N LEU B 227 O GLN B 231 SHEET 10 B10 ASP B 261 HIS B 264 -1 O ASP B 261 N GLU B 226 SHEET 1 C 7 GLN B 29 VAL B 33 0 SHEET 2 C 7 VAL B 56 ALA B 60 1 O VAL B 57 N GLN B 29 SHEET 3 C 7 GLN B 81 ARG B 89 -1 O SER B 85 N LEU B 58 SHEET 4 C 7 PHE B 150 ASN B 158 -1 O VAL B 155 N LEU B 84 SHEET 5 C 7 GLY B 137 ALA B 147 -1 N LEU B 143 O GLY B 154 SHEET 6 C 7 ASP B 131 ALA B 134 -1 N ALA B 134 O GLY B 137 SHEET 7 C 7 GLY B 125 LYS B 127 -1 N GLY B 125 O LEU B 133 CISPEP 1 ILE A 21 GLY A 22 0 3.05 CISPEP 2 ALA A 23 GLY A 24 0 -0.68 CISPEP 3 TRP A 128 PRO A 129 0 4.52 CISPEP 4 GLN A 148 PRO A 149 0 21.78 CISPEP 5 TRP B 128 PRO B 129 0 -7.11 CISPEP 6 GLN B 148 PRO B 149 0 14.95 CRYST1 79.693 62.772 105.752 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009456 0.00000