HEADER VIRAL PROTEIN/PROTEIN BINDING 21-DEC-09 3L4Q TITLE STRUCTURAL INSIGHTS INTO PHOSPHOINOSITIDE 3-KINASE ACTIVATION BY THE TITLE 2 INFLUENZA A VIRUS NS1 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 73-230; COMPND 5 SYNONYM: NS1, NS1A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT BETA; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: ISH2 DOMAIN, UNP RESIDUES 424-593; COMPND 11 SYNONYM: P85BETA, PI3-KINASE P85 SUBUNIT BETA, PTDINS-3-KINASE P85- COMPND 12 BETA; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 211044; SOURCE 4 STRAIN: A/PUERTO RICO/8/1934 H1N1; SOURCE 5 GENE: NS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 13 ORGANISM_COMMON: BOVINE; SOURCE 14 ORGANISM_TAXID: 9913; SOURCE 15 GENE: PIK3R2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1 KEYWDS PI3K, PHOSPHOINOSITIDE-3-KINASE, INFLUENZA VIRUS, NS1, KINASE, VIRAL KEYWDS 2 PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.G.HALE,P.S.KERRY,D.JACKSON,B.L.PRECIOUS,A.GRAY,M.J.KILLIP, AUTHOR 2 R.E.RANDALL,R.J.RUSSELL REVDAT 4 01-NOV-23 3L4Q 1 REMARK REVDAT 3 10-NOV-21 3L4Q 1 REMARK SEQADV REVDAT 2 12-FEB-14 3L4Q 1 JRNL VERSN REVDAT 1 02-FEB-10 3L4Q 0 JRNL AUTH B.G.HALE,P.S.KERRY,D.JACKSON,B.L.PRECIOUS,A.GRAY,M.J.KILLIP, JRNL AUTH 2 R.E.RANDALL,R.J.RUSSELL JRNL TITL STRUCTURAL INSIGHTS INTO PHOSPHOINOSITIDE 3-KINASE JRNL TITL 2 ACTIVATION BY THE INFLUENZA A VIRUS NS1 PROTEIN JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 1954 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20133840 JRNL DOI 10.1073/PNAS.0910715107 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 36826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1940 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2639 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.25000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 1.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.294 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.220 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4692 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6298 ; 1.836 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ; 7.312 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;39.283 ;24.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 949 ;19.820 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;17.127 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 693 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3488 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2811 ; 1.276 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4538 ; 2.385 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1881 ; 3.323 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1760 ; 5.549 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36826 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 82.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2GX9 (CHAIN A, B) AND 2V1Y (CHAIN C, D) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.97500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.33500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.97500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.33500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 SER A 73 REMARK 465 ASP A 74 REMARK 465 GLU A 75 REMARK 465 ALA A 76 REMARK 465 LEU A 77 REMARK 465 LYS A 78 REMARK 465 MET A 79 REMARK 465 THR A 80 REMARK 465 MET A 81 REMARK 465 ALA A 82 REMARK 465 TRP A 203 REMARK 465 ARG A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 ASN A 207 REMARK 465 GLU A 208 REMARK 465 ASN A 209 REMARK 465 GLY A 210 REMARK 465 ARG A 211 REMARK 465 PRO A 212 REMARK 465 PRO A 213 REMARK 465 LEU A 214 REMARK 465 THR A 215 REMARK 465 PRO A 216 REMARK 465 LYS A 217 REMARK 465 GLN A 218 REMARK 465 LYS A 219 REMARK 465 ARG A 220 REMARK 465 GLU A 221 REMARK 465 MET A 222 REMARK 465 ALA A 223 REMARK 465 GLY A 224 REMARK 465 THR A 225 REMARK 465 ILE A 226 REMARK 465 ARG A 227 REMARK 465 SER A 228 REMARK 465 GLU A 229 REMARK 465 VAL A 230 REMARK 465 TYR C 422 REMARK 465 GLN C 423 REMARK 465 GLN C 424 REMARK 465 ASP C 425 REMARK 465 GLN C 426 REMARK 465 ILE C 427 REMARK 465 VAL C 428 REMARK 465 HIS B 67 REMARK 465 HIS B 68 REMARK 465 HIS B 69 REMARK 465 HIS B 70 REMARK 465 HIS B 71 REMARK 465 HIS B 72 REMARK 465 SER B 73 REMARK 465 ASP B 74 REMARK 465 GLU B 75 REMARK 465 ALA B 76 REMARK 465 LEU B 77 REMARK 465 LYS B 78 REMARK 465 MET B 79 REMARK 465 THR B 80 REMARK 465 MET B 81 REMARK 465 ALA B 82 REMARK 465 SER B 83 REMARK 465 TRP B 203 REMARK 465 ARG B 204 REMARK 465 SER B 205 REMARK 465 SER B 206 REMARK 465 ASN B 207 REMARK 465 GLU B 208 REMARK 465 ASN B 209 REMARK 465 GLY B 210 REMARK 465 ARG B 211 REMARK 465 PRO B 212 REMARK 465 PRO B 213 REMARK 465 LEU B 214 REMARK 465 THR B 215 REMARK 465 PRO B 216 REMARK 465 LYS B 217 REMARK 465 GLN B 218 REMARK 465 LYS B 219 REMARK 465 ARG B 220 REMARK 465 GLU B 221 REMARK 465 MET B 222 REMARK 465 ALA B 223 REMARK 465 GLY B 224 REMARK 465 THR B 225 REMARK 465 ILE B 226 REMARK 465 ARG B 227 REMARK 465 SER B 228 REMARK 465 GLU B 229 REMARK 465 VAL B 230 REMARK 465 TYR D 422 REMARK 465 GLN D 423 REMARK 465 GLN D 424 REMARK 465 ASP D 425 REMARK 465 GLN D 426 REMARK 465 ILE D 427 REMARK 465 VAL D 428 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 139 O HOH B 242 1.47 REMARK 500 OD1 ASP D 449 NH1 ARG D 452 1.97 REMARK 500 OE1 GLN D 469 O HOH D 233 2.05 REMARK 500 OD2 ASP A 189 O HOH A 265 2.09 REMARK 500 O ARG C 505 O HOH C 45 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 561 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 138 -134.47 64.87 REMARK 500 LEU A 146 138.35 -171.49 REMARK 500 GLU C 506 -107.88 -145.41 REMARK 500 PHE B 138 -119.64 69.47 REMARK 500 PRO B 167 172.62 -53.16 REMARK 500 ARG D 502 51.53 -92.91 REMARK 500 ASN D 508 -68.44 -93.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 86 SER A 87 147.02 REMARK 500 SER A 165 LEU A 166 -137.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 568 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1 DBREF 3L4Q A 73 230 UNP P03496 NS1_I34A1 73 230 DBREF 3L4Q C 422 591 UNP P23726 P85B_BOVIN 424 593 DBREF 3L4Q B 73 230 UNP P03496 NS1_I34A1 73 230 DBREF 3L4Q D 422 591 UNP P23726 P85B_BOVIN 424 593 SEQADV 3L4Q HIS A 67 UNP P03496 EXPRESSION TAG SEQADV 3L4Q HIS A 68 UNP P03496 EXPRESSION TAG SEQADV 3L4Q HIS A 69 UNP P03496 EXPRESSION TAG SEQADV 3L4Q HIS A 70 UNP P03496 EXPRESSION TAG SEQADV 3L4Q HIS A 71 UNP P03496 EXPRESSION TAG SEQADV 3L4Q HIS A 72 UNP P03496 EXPRESSION TAG SEQADV 3L4Q SER C 495 UNP P23726 CYS 497 ENGINEERED MUTATION SEQADV 3L4Q HIS B 67 UNP P03496 EXPRESSION TAG SEQADV 3L4Q HIS B 68 UNP P03496 EXPRESSION TAG SEQADV 3L4Q HIS B 69 UNP P03496 EXPRESSION TAG SEQADV 3L4Q HIS B 70 UNP P03496 EXPRESSION TAG SEQADV 3L4Q HIS B 71 UNP P03496 EXPRESSION TAG SEQADV 3L4Q HIS B 72 UNP P03496 EXPRESSION TAG SEQADV 3L4Q SER D 495 UNP P23726 CYS 497 ENGINEERED MUTATION SEQRES 1 A 164 HIS HIS HIS HIS HIS HIS SER ASP GLU ALA LEU LYS MET SEQRES 2 A 164 THR MET ALA SER VAL PRO ALA SER ARG TYR LEU THR ASP SEQRES 3 A 164 MET THR LEU GLU GLU MET SER ARG ASP TRP SER MET LEU SEQRES 4 A 164 ILE PRO LYS GLN LYS VAL ALA GLY PRO LEU CYS ILE ARG SEQRES 5 A 164 MET ASP GLN ALA ILE MET ASP LYS ASN ILE ILE LEU LYS SEQRES 6 A 164 ALA ASN PHE SER VAL ILE PHE ASP ARG LEU GLU THR LEU SEQRES 7 A 164 ILE LEU LEU ARG ALA PHE THR GLU GLU GLY ALA ILE VAL SEQRES 8 A 164 GLY GLU ILE SER PRO LEU PRO SER LEU PRO GLY HIS THR SEQRES 9 A 164 ALA GLU ASP VAL LYS ASN ALA VAL GLY VAL LEU ILE GLY SEQRES 10 A 164 GLY LEU GLU TRP ASN ASP ASN THR VAL ARG VAL SER GLU SEQRES 11 A 164 THR LEU GLN ARG PHE ALA TRP ARG SER SER ASN GLU ASN SEQRES 12 A 164 GLY ARG PRO PRO LEU THR PRO LYS GLN LYS ARG GLU MET SEQRES 13 A 164 ALA GLY THR ILE ARG SER GLU VAL SEQRES 1 C 170 TYR GLN GLN ASP GLN ILE VAL LYS GLU ASP SER VAL GLU SEQRES 2 C 170 ALA VAL GLY ALA GLN LEU LYS VAL TYR HIS GLN GLN TYR SEQRES 3 C 170 GLN ASP LYS SER ARG GLU TYR ASP GLN LEU TYR GLU GLU SEQRES 4 C 170 TYR THR ARG THR SER GLN GLU LEU GLN MET LYS ARG THR SEQRES 5 C 170 ALA ILE GLU ALA PHE ASN GLU THR ILE LYS ILE PHE GLU SEQRES 6 C 170 GLU GLN GLY GLN THR GLN GLU LYS SER SER LYS GLU TYR SEQRES 7 C 170 LEU GLU ARG PHE ARG ARG GLU GLY ASN GLU LYS GLU MET SEQRES 8 C 170 GLN ARG ILE LEU LEU ASN SER GLU ARG LEU LYS SER ARG SEQRES 9 C 170 ILE ALA GLU ILE HIS GLU SER ARG THR LYS LEU GLU GLN SEQRES 10 C 170 GLU LEU ARG ALA GLN ALA SER ASP ASN ARG GLU ILE ASP SEQRES 11 C 170 LYS ARG MET ASN SER LEU LYS PRO ASP LEU MET GLN LEU SEQRES 12 C 170 ARG LYS ILE ARG ASP GLN TYR LEU VAL TRP LEU THR GLN SEQRES 13 C 170 LYS GLY ALA ARG GLN LYS LYS ILE ASN GLU TRP LEU GLY SEQRES 14 C 170 ILE SEQRES 1 B 164 HIS HIS HIS HIS HIS HIS SER ASP GLU ALA LEU LYS MET SEQRES 2 B 164 THR MET ALA SER VAL PRO ALA SER ARG TYR LEU THR ASP SEQRES 3 B 164 MET THR LEU GLU GLU MET SER ARG ASP TRP SER MET LEU SEQRES 4 B 164 ILE PRO LYS GLN LYS VAL ALA GLY PRO LEU CYS ILE ARG SEQRES 5 B 164 MET ASP GLN ALA ILE MET ASP LYS ASN ILE ILE LEU LYS SEQRES 6 B 164 ALA ASN PHE SER VAL ILE PHE ASP ARG LEU GLU THR LEU SEQRES 7 B 164 ILE LEU LEU ARG ALA PHE THR GLU GLU GLY ALA ILE VAL SEQRES 8 B 164 GLY GLU ILE SER PRO LEU PRO SER LEU PRO GLY HIS THR SEQRES 9 B 164 ALA GLU ASP VAL LYS ASN ALA VAL GLY VAL LEU ILE GLY SEQRES 10 B 164 GLY LEU GLU TRP ASN ASP ASN THR VAL ARG VAL SER GLU SEQRES 11 B 164 THR LEU GLN ARG PHE ALA TRP ARG SER SER ASN GLU ASN SEQRES 12 B 164 GLY ARG PRO PRO LEU THR PRO LYS GLN LYS ARG GLU MET SEQRES 13 B 164 ALA GLY THR ILE ARG SER GLU VAL SEQRES 1 D 170 TYR GLN GLN ASP GLN ILE VAL LYS GLU ASP SER VAL GLU SEQRES 2 D 170 ALA VAL GLY ALA GLN LEU LYS VAL TYR HIS GLN GLN TYR SEQRES 3 D 170 GLN ASP LYS SER ARG GLU TYR ASP GLN LEU TYR GLU GLU SEQRES 4 D 170 TYR THR ARG THR SER GLN GLU LEU GLN MET LYS ARG THR SEQRES 5 D 170 ALA ILE GLU ALA PHE ASN GLU THR ILE LYS ILE PHE GLU SEQRES 6 D 170 GLU GLN GLY GLN THR GLN GLU LYS SER SER LYS GLU TYR SEQRES 7 D 170 LEU GLU ARG PHE ARG ARG GLU GLY ASN GLU LYS GLU MET SEQRES 8 D 170 GLN ARG ILE LEU LEU ASN SER GLU ARG LEU LYS SER ARG SEQRES 9 D 170 ILE ALA GLU ILE HIS GLU SER ARG THR LYS LEU GLU GLN SEQRES 10 D 170 GLU LEU ARG ALA GLN ALA SER ASP ASN ARG GLU ILE ASP SEQRES 11 D 170 LYS ARG MET ASN SER LEU LYS PRO ASP LEU MET GLN LEU SEQRES 12 D 170 ARG LYS ILE ARG ASP GLN TYR LEU VAL TRP LEU THR GLN SEQRES 13 D 170 LYS GLY ALA ARG GLN LYS LYS ILE ASN GLU TRP LEU GLY SEQRES 14 D 170 ILE HET GOL C 1 6 HET GOL D 1 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *281(H2 O) HELIX 1 1 THR A 94 ARG A 100 1 7 HELIX 2 2 THR A 170 TRP A 187 1 18 HELIX 3 3 SER A 195 ALA A 202 1 8 HELIX 4 4 LYS C 429 GLU C 493 1 65 HELIX 5 5 LYS C 497 GLU C 501 5 5 HELIX 6 6 LEU C 516 LYS C 578 1 63 HELIX 7 7 ARG C 581 GLY C 590 1 10 HELIX 8 8 THR B 94 ARG B 100 1 7 HELIX 9 9 THR B 170 ASN B 188 1 19 HELIX 10 10 SER B 195 ALA B 202 1 8 HELIX 11 11 GLU D 430 SER D 496 1 67 HELIX 12 12 LEU D 517 LYS D 578 1 62 HELIX 13 13 ARG D 581 GLY D 590 1 10 SHEET 1 A 6 ARG A 88 THR A 91 0 SHEET 2 A 6 ASN A 127 ILE A 137 -1 O PHE A 134 N LEU A 90 SHEET 3 A 6 ARG A 140 THR A 151 -1 O PHE A 150 N ILE A 129 SHEET 4 A 6 ILE A 156 PRO A 162 -1 O GLY A 158 N ALA A 149 SHEET 5 A 6 LEU A 115 ASP A 120 -1 N CYS A 116 O SER A 161 SHEET 6 A 6 PRO A 107 ALA A 112 -1 N ALA A 112 O LEU A 115 SHEET 1 B 3 ARG A 88 THR A 91 0 SHEET 2 B 3 ASN A 127 ILE A 137 -1 O PHE A 134 N LEU A 90 SHEET 3 B 3 THR A 191 VAL A 194 1 O THR A 191 N ILE A 128 SHEET 1 C 6 SER B 87 THR B 91 0 SHEET 2 C 6 ASN B 127 ILE B 137 -1 O PHE B 134 N LEU B 90 SHEET 3 C 6 ARG B 140 THR B 151 -1 O GLU B 142 N SER B 135 SHEET 4 C 6 ILE B 156 PRO B 162 -1 O ILE B 160 N LEU B 147 SHEET 5 C 6 LEU B 115 ASP B 120 -1 N CYS B 116 O SER B 161 SHEET 6 C 6 PRO B 107 ALA B 112 -1 N LYS B 110 O ILE B 117 SHEET 1 D 3 SER B 87 THR B 91 0 SHEET 2 D 3 ASN B 127 ILE B 137 -1 O PHE B 134 N LEU B 90 SHEET 3 D 3 THR B 191 VAL B 194 1 O THR B 191 N ILE B 128 CISPEP 1 GLU C 506 GLY C 507 0 -3.43 SITE 1 AC1 3 LEU A 95 HOH C 141 ARG C 568 SITE 1 AC2 6 THR B 94 LEU B 95 HOH B 270 TYR D 447 SITE 2 AC2 6 ARG D 565 ARG D 568 CRYST1 57.950 98.670 149.940 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017256 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006669 0.00000