HEADER OXIDOREDUCTASE 23-DEC-09 3L6E TITLE CRYSTAL STRUCTURE OF PUTATIVE SHORT CHAIN DEHYDROGENASE/REDUCTASE TITLE 2 FAMILY OXIDOREDUCTASE FROM AEROMONAS HYDROPHILA SUBSP. HYDROPHILA TITLE 3 ATCC 7966 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS HYDROPHILA SUBSP. HYDROPHILA; SOURCE 3 ORGANISM_TAXID: 380703; SOURCE 4 STRAIN: ATCC 7966; SOURCE 5 GENE: ABK37325.1, AHA_3651; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 OXIDOREDUCTASE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,Y.PATSKOVSKY,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO, AUTHOR 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 10-FEB-21 3L6E 1 AUTHOR JRNL REMARK SEQADV REVDAT 6 2 1 LINK REVDAT 5 21-NOV-18 3L6E 1 AUTHOR REVDAT 4 01-NOV-17 3L6E 1 REMARK REVDAT 3 13-JUL-11 3L6E 1 VERSN REVDAT 2 22-DEC-10 3L6E 1 AUTHOR KEYWDS REVDAT 1 09-FEB-10 3L6E 0 JRNL AUTH V.N.MALASHKEVICH,Y.PATSKOVSKY,R.TORO,J.M.SAUDER,S.K.BURLEY, JRNL AUTH 2 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE SHORT CHAIN JRNL TITL 2 DEHYDROGENASE/REDUCTASE FAMILY OXIDOREDUCTASE FROM AEROMONAS JRNL TITL 3 HYDROPHILA SUBSP. HYDROPHILA ATCC 7966 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 19420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.1520 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3179 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.018 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3230 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4361 ; 1.272 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 6.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;33.701 ;23.169 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;20.420 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.697 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 502 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2407 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2057 ; 1.018 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3258 ; 3.697 ;50.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1173 ; 9.138 ;50.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1103 ; 0.935 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 229 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 79.6485 21.1279 -8.6276 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.0423 REMARK 3 T33: 0.2511 T12: 0.0158 REMARK 3 T13: -0.0114 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.5576 L22: 1.6147 REMARK 3 L33: 2.8709 L12: 0.1309 REMARK 3 L13: -0.4199 L23: 0.1648 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: 0.2510 S13: 0.0195 REMARK 3 S21: -0.1373 S22: -0.0099 S23: 0.0772 REMARK 3 S31: -0.0015 S32: -0.0986 S33: -0.0316 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 228 REMARK 3 RESIDUE RANGE : B 500 B 500 REMARK 3 ORIGIN FOR THE GROUP (A): 80.4764 23.4090 23.3114 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.0139 REMARK 3 T33: 0.2965 T12: -0.0196 REMARK 3 T13: 0.0008 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.7329 L22: 1.1532 REMARK 3 L33: 2.7495 L12: 0.0322 REMARK 3 L13: 0.0788 L23: -0.1649 REMARK 3 S TENSOR REMARK 3 S11: 0.0621 S12: -0.1428 S13: -0.0411 REMARK 3 S21: 0.1857 S22: -0.0393 S23: 0.1173 REMARK 3 S31: 0.1178 S32: 0.0148 S33: -0.0228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.88200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PH 6.5, 25% PEG 3350, REMARK 280 200MM LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 63.68150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.50250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.68150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.50250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 127.36300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 53.00500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 127.36300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 53.00500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 127.36300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 53.00500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 GLU A 89 REMARK 465 PHE A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 VAL A 93 REMARK 465 GLY A 94 REMARK 465 TRP A 186 REMARK 465 ASP A 187 REMARK 465 ASN A 188 REMARK 465 THR A 189 REMARK 465 ASP A 190 REMARK 465 HIS A 191 REMARK 465 VAL A 192 REMARK 465 ASP A 193 REMARK 465 PRO A 194 REMARK 465 SER A 195 REMARK 465 GLY A 196 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 GLY B 91 REMARK 465 PRO B 92 REMARK 465 VAL B 93 REMARK 465 GLY B 94 REMARK 465 VAL B 95 REMARK 465 TRP B 186 REMARK 465 ASP B 187 REMARK 465 ASN B 188 REMARK 465 THR B 189 REMARK 465 ASP B 190 REMARK 465 HIS B 191 REMARK 465 VAL B 192 REMARK 465 ASP B 193 REMARK 465 PRO B 194 REMARK 465 SER B 195 REMARK 465 GLY B 196 REMARK 465 GLY B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 143 O HOH B 275 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 87 -117.03 -161.68 REMARK 500 LEU A 134 72.44 -103.23 REMARK 500 VAL A 140 72.25 -103.68 REMARK 500 SER A 183 147.50 -176.47 REMARK 500 GLU A 184 -11.09 84.00 REMARK 500 GLU B 89 -79.32 -84.21 REMARK 500 LYS B 142 1.02 84.06 REMARK 500 ASP B 168 40.16 -103.07 REMARK 500 SER B 183 -137.32 117.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 36 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11164I RELATED DB: TARGETDB DBREF 3L6E A 4 227 UNP A0KPA6 A0KPA6_AERHH 2 225 DBREF 3L6E B 4 227 UNP A0KPA6 A0KPA6_AERHH 2 225 SEQADV 3L6E MSE A 1 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E SER A 2 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E LEU A 3 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E GLN A 42 UNP A0KPA6 GLU 40 CONFLICT SEQADV 3L6E LEU A 45 UNP A0KPA6 GLU 43 CONFLICT SEQADV 3L6E ASN A 49 UNP A0KPA6 LYS 47 CONFLICT SEQADV 3L6E VAL A 55 UNP A0KPA6 ALA 53 CONFLICT SEQADV 3L6E ASP A 63 UNP A0KPA6 GLU 61 CONFLICT SEQADV 3L6E THR A 87 UNP A0KPA6 VAL 85 CONFLICT SEQADV 3L6E MSE A 105 UNP A0KPA6 VAL 103 CONFLICT SEQADV 3L6E VAL A 110 UNP A0KPA6 ILE 108 CONFLICT SEQADV 3L6E GLU A 125 UNP A0KPA6 ASP 123 CONFLICT SEQADV 3L6E ARG A 126 UNP A0KPA6 LYS 124 CONFLICT SEQADV 3L6E ASP A 168 UNP A0KPA6 GLY 166 CONFLICT SEQADV 3L6E THR A 189 UNP A0KPA6 SER 187 CONFLICT SEQADV 3L6E PRO A 194 UNP A0KPA6 SER 192 CONFLICT SEQADV 3L6E GLU A 228 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E GLY A 229 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS A 230 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS A 231 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS A 232 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS A 233 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS A 234 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS A 235 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E MSE B 1 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E SER B 2 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E LEU B 3 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E GLN B 42 UNP A0KPA6 GLU 40 CONFLICT SEQADV 3L6E LEU B 45 UNP A0KPA6 GLU 43 CONFLICT SEQADV 3L6E ASN B 49 UNP A0KPA6 LYS 47 CONFLICT SEQADV 3L6E VAL B 55 UNP A0KPA6 ALA 53 CONFLICT SEQADV 3L6E ASP B 63 UNP A0KPA6 GLU 61 CONFLICT SEQADV 3L6E THR B 87 UNP A0KPA6 VAL 85 CONFLICT SEQADV 3L6E MSE B 105 UNP A0KPA6 VAL 103 CONFLICT SEQADV 3L6E VAL B 110 UNP A0KPA6 ILE 108 CONFLICT SEQADV 3L6E GLU B 125 UNP A0KPA6 ASP 123 CONFLICT SEQADV 3L6E ARG B 126 UNP A0KPA6 LYS 124 CONFLICT SEQADV 3L6E ASP B 168 UNP A0KPA6 GLY 166 CONFLICT SEQADV 3L6E THR B 189 UNP A0KPA6 SER 187 CONFLICT SEQADV 3L6E PRO B 194 UNP A0KPA6 SER 192 CONFLICT SEQADV 3L6E GLU B 228 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E GLY B 229 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS B 230 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS B 231 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS B 232 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS B 233 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS B 234 UNP A0KPA6 EXPRESSION TAG SEQADV 3L6E HIS B 235 UNP A0KPA6 EXPRESSION TAG SEQRES 1 A 235 MSE SER LEU GLY HIS ILE ILE VAL THR GLY ALA GLY SER SEQRES 2 A 235 GLY LEU GLY ARG ALA LEU THR ILE GLY LEU VAL GLU ARG SEQRES 3 A 235 GLY HIS GLN VAL SER MSE MSE GLY ARG ARG TYR GLN ARG SEQRES 4 A 235 LEU GLN GLN GLN GLU LEU LEU LEU GLY ASN ALA VAL ILE SEQRES 5 A 235 GLY ILE VAL ALA ASP LEU ALA HIS HIS GLU ASP VAL ASP SEQRES 6 A 235 VAL ALA PHE ALA ALA ALA VAL GLU TRP GLY GLY LEU PRO SEQRES 7 A 235 GLU LEU VAL LEU HIS CYS ALA GLY THR GLY GLU PHE GLY SEQRES 8 A 235 PRO VAL GLY VAL TYR THR ALA GLU GLN ILE ARG ARG VAL SEQRES 9 A 235 MSE GLU SER ASN LEU VAL SER THR ILE LEU VAL ALA GLN SEQRES 10 A 235 GLN THR VAL ARG LEU ILE GLY GLU ARG GLY GLY VAL LEU SEQRES 11 A 235 ALA ASN VAL LEU SER SER ALA ALA GLN VAL GLY LYS ALA SEQRES 12 A 235 ASN GLU SER LEU TYR CYS ALA SER LYS TRP GLY MSE ARG SEQRES 13 A 235 GLY PHE LEU GLU SER LEU ARG ALA GLU LEU LYS ASP SER SEQRES 14 A 235 PRO LEU ARG LEU VAL ASN LEU TYR PRO SER GLY ILE ARG SEQRES 15 A 235 SER GLU PHE TRP ASP ASN THR ASP HIS VAL ASP PRO SER SEQRES 16 A 235 GLY PHE MSE THR PRO GLU ASP ALA ALA ALA TYR MSE LEU SEQRES 17 A 235 ASP ALA LEU GLU ALA ARG SER SER CYS HIS VAL THR ASP SEQRES 18 A 235 LEU PHE ILE GLY ARG ASN GLU GLY HIS HIS HIS HIS HIS SEQRES 19 A 235 HIS SEQRES 1 B 235 MSE SER LEU GLY HIS ILE ILE VAL THR GLY ALA GLY SER SEQRES 2 B 235 GLY LEU GLY ARG ALA LEU THR ILE GLY LEU VAL GLU ARG SEQRES 3 B 235 GLY HIS GLN VAL SER MSE MSE GLY ARG ARG TYR GLN ARG SEQRES 4 B 235 LEU GLN GLN GLN GLU LEU LEU LEU GLY ASN ALA VAL ILE SEQRES 5 B 235 GLY ILE VAL ALA ASP LEU ALA HIS HIS GLU ASP VAL ASP SEQRES 6 B 235 VAL ALA PHE ALA ALA ALA VAL GLU TRP GLY GLY LEU PRO SEQRES 7 B 235 GLU LEU VAL LEU HIS CYS ALA GLY THR GLY GLU PHE GLY SEQRES 8 B 235 PRO VAL GLY VAL TYR THR ALA GLU GLN ILE ARG ARG VAL SEQRES 9 B 235 MSE GLU SER ASN LEU VAL SER THR ILE LEU VAL ALA GLN SEQRES 10 B 235 GLN THR VAL ARG LEU ILE GLY GLU ARG GLY GLY VAL LEU SEQRES 11 B 235 ALA ASN VAL LEU SER SER ALA ALA GLN VAL GLY LYS ALA SEQRES 12 B 235 ASN GLU SER LEU TYR CYS ALA SER LYS TRP GLY MSE ARG SEQRES 13 B 235 GLY PHE LEU GLU SER LEU ARG ALA GLU LEU LYS ASP SER SEQRES 14 B 235 PRO LEU ARG LEU VAL ASN LEU TYR PRO SER GLY ILE ARG SEQRES 15 B 235 SER GLU PHE TRP ASP ASN THR ASP HIS VAL ASP PRO SER SEQRES 16 B 235 GLY PHE MSE THR PRO GLU ASP ALA ALA ALA TYR MSE LEU SEQRES 17 B 235 ASP ALA LEU GLU ALA ARG SER SER CYS HIS VAL THR ASP SEQRES 18 B 235 LEU PHE ILE GLY ARG ASN GLU GLY HIS HIS HIS HIS HIS SEQRES 19 B 235 HIS MODRES 3L6E MSE A 32 MET SELENOMETHIONINE MODRES 3L6E MSE A 33 MET SELENOMETHIONINE MODRES 3L6E MSE A 105 MET SELENOMETHIONINE MODRES 3L6E MSE A 155 MET SELENOMETHIONINE MODRES 3L6E MSE A 198 MET SELENOMETHIONINE MODRES 3L6E MSE A 207 MET SELENOMETHIONINE MODRES 3L6E MSE B 32 MET SELENOMETHIONINE MODRES 3L6E MSE B 33 MET SELENOMETHIONINE MODRES 3L6E MSE B 105 MET SELENOMETHIONINE MODRES 3L6E MSE B 155 MET SELENOMETHIONINE MODRES 3L6E MSE B 198 MET SELENOMETHIONINE MODRES 3L6E MSE B 207 MET SELENOMETHIONINE HET MSE A 32 8 HET MSE A 33 8 HET MSE A 105 8 HET MSE A 155 8 HET MSE A 198 8 HET MSE A 207 8 HET MSE B 32 8 HET MSE B 33 8 HET MSE B 105 8 HET MSE B 155 8 HET MSE B 198 8 HET MSE B 207 8 HET SO4 A 500 5 HET SO4 B 500 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *107(H2 O) HELIX 1 1 SER A 13 ARG A 26 1 14 HELIX 2 2 ARG A 36 GLY A 48 1 13 HELIX 3 3 HIS A 60 GLY A 76 1 17 HELIX 4 4 THR A 97 GLY A 124 1 28 HELIX 5 5 ASN A 144 LEU A 166 1 23 HELIX 6 6 THR A 199 LEU A 211 1 13 HELIX 7 7 SER B 13 ARG B 26 1 14 HELIX 8 8 ARG B 36 GLY B 48 1 13 HELIX 9 9 HIS B 60 GLY B 76 1 17 HELIX 10 10 ILE B 101 GLY B 124 1 24 HELIX 11 11 ASN B 144 LEU B 166 1 23 HELIX 12 12 THR B 199 LEU B 211 1 13 SHEET 1 A14 VAL A 51 VAL A 55 0 SHEET 2 A14 GLN A 29 GLY A 34 1 N MSE A 32 O ILE A 54 SHEET 3 A14 HIS A 5 THR A 9 1 N VAL A 8 O MSE A 33 SHEET 4 A14 LEU A 80 CYS A 84 1 O LEU A 82 N ILE A 7 SHEET 5 A14 GLY A 128 VAL A 133 1 O ALA A 131 N HIS A 83 SHEET 6 A14 LEU A 171 ILE A 181 1 O LEU A 176 N ASN A 132 SHEET 7 A14 CYS A 217 ARG A 226 1 O LEU A 222 N TYR A 177 SHEET 8 A14 CYS B 217 ARG B 226 -1 O HIS B 218 N GLY A 225 SHEET 9 A14 LEU B 171 ILE B 181 1 N TYR B 177 O LEU B 222 SHEET 10 A14 GLY B 128 VAL B 133 1 N LEU B 130 O ARG B 172 SHEET 11 A14 LEU B 80 CYS B 84 1 N VAL B 81 O ALA B 131 SHEET 12 A14 ILE B 6 VAL B 8 1 N ILE B 7 O LEU B 82 SHEET 13 A14 VAL B 30 GLY B 34 1 O MSE B 33 N VAL B 8 SHEET 14 A14 VAL B 51 VAL B 55 1 O ILE B 54 N MSE B 32 SHEET 1 B 6 SER A 136 ALA A 137 0 SHEET 2 B 6 LEU A 171 ILE A 181 1 O GLY A 180 N SER A 136 SHEET 3 B 6 CYS A 217 ARG A 226 1 O LEU A 222 N TYR A 177 SHEET 4 B 6 CYS B 217 ARG B 226 -1 O HIS B 218 N GLY A 225 SHEET 5 B 6 LEU B 171 ILE B 181 1 N TYR B 177 O LEU B 222 SHEET 6 B 6 SER B 136 ALA B 137 1 N SER B 136 O GLY B 180 LINK C SER A 31 N MSE A 32 1555 1555 1.33 LINK C MSE A 32 N MSE A 33 1555 1555 1.32 LINK C MSE A 33 N GLY A 34 1555 1555 1.33 LINK C VAL A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N GLU A 106 1555 1555 1.33 LINK C GLY A 154 N MSE A 155 1555 1555 1.34 LINK C MSE A 155 N ARG A 156 1555 1555 1.33 LINK C PHE A 197 N MSE A 198 1555 1555 1.33 LINK C MSE A 198 N THR A 199 1555 1555 1.33 LINK C TYR A 206 N MSE A 207 1555 1555 1.33 LINK C MSE A 207 N LEU A 208 1555 1555 1.33 LINK C SER B 31 N MSE B 32 1555 1555 1.33 LINK C MSE B 32 N MSE B 33 1555 1555 1.32 LINK C MSE B 33 N GLY B 34 1555 1555 1.33 LINK C VAL B 104 N MSE B 105 1555 1555 1.33 LINK C MSE B 105 N GLU B 106 1555 1555 1.33 LINK C GLY B 154 N MSE B 155 1555 1555 1.34 LINK C MSE B 155 N ARG B 156 1555 1555 1.33 LINK C PHE B 197 N MSE B 198 1555 1555 1.33 LINK C MSE B 198 N THR B 199 1555 1555 1.33 LINK C TYR B 206 N MSE B 207 1555 1555 1.32 LINK C MSE B 207 N LEU B 208 1555 1555 1.32 SITE 1 AC1 7 GLY A 10 ALA A 11 GLY A 12 GLY A 34 SITE 2 AC1 7 ARG A 35 ARG A 36 HOH A 250 SITE 1 AC2 7 GLY B 10 ALA B 11 GLY B 12 SER B 13 SITE 2 AC2 7 GLY B 34 ARG B 35 ARG B 36 CRYST1 127.363 53.005 67.019 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014921 0.00000