HEADER ISOMERASE 26-DEC-09 3L6V TITLE CRYSTAL STRUCTURE OF THE XANTHOMONAS CAMPESTRIS GYRASE A C-TERMINAL TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: GYRA; COMPND 6 EC: 5.99.1.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 GENE: GYRA, XCC1574; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GYRASE A C-TERMINAL DOMAIN, GYRA C-TERMINAL DOMAIN, DNA WRAPPING, KEYWDS 2 BETA-STRAND-BEARING PROLINE, ATP-BINDING, ISOMERASE, NUCLEOTIDE- KEYWDS 3 BINDING, TOPOISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.HSIEH,T.J.YEN,T.S.LIN,H.T.CHANG,S.Y.HUANG,L.FARH,N.L.CHAN REVDAT 3 29-MAY-24 3L6V 1 REMARK REVDAT 2 10-NOV-21 3L6V 1 SEQADV REVDAT 1 09-MAR-10 3L6V 0 JRNL AUTH T.J.HSIEH,T.J.YEN,T.S.LIN,H.T.CHANG,S.Y.HUANG,L.FARH, JRNL AUTH 2 N.L.CHAN JRNL TITL TWISTING OF THE DNA BINDING SURFACE BY A BETA-STRAND-BEARING JRNL TITL 2 PROLINE MODULATES DNA GYRASE ACTIVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 38303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4745 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : 1.11000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : -0.23000 REMARK 3 B13 (A**2) : 0.37000 REMARK 3 B23 (A**2) : 0.63000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.255 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.305 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4808 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6494 ; 1.896 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 613 ; 7.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;29.205 ;22.153 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 847 ;20.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;18.852 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 755 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3581 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3042 ; 1.099 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4886 ; 2.020 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1766 ; 3.008 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 4.950 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-06; 02-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; NSRRC REMARK 200 BEAMLINE : BL12B2; BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960, 0.96430; 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 (DCM); LN2-COOLED, FIXED-EXIT REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 SI(1 1 1) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40325 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.04400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM AMMONIUM SULFATE, 100MM BIS-TRIS REMARK 280 PH 5.2-5.9, 25-29% (V/V) PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 741 REMARK 465 GLY A 742 REMARK 465 VAL A 743 REMARK 465 GLU A 744 REMARK 465 ASP A 745 REMARK 465 GLU A 746 REMARK 465 VAL A 747 REMARK 465 GLU A 748 REMARK 465 ASP A 749 REMARK 465 GLU A 750 REMARK 465 SER A 751 REMARK 465 ALA A 752 REMARK 465 GLU A 753 REMARK 465 GLU A 754 REMARK 465 VAL A 755 REMARK 465 VAL A 756 REMARK 465 GLU A 757 REMARK 465 THR A 758 REMARK 465 THR A 759 REMARK 465 ASP A 760 REMARK 465 GLY A 761 REMARK 465 ALA A 762 REMARK 465 GLU A 763 REMARK 465 PRO A 764 REMARK 465 ALA A 765 REMARK 465 VAL A 766 REMARK 465 ILE A 767 REMARK 465 ASP A 768 REMARK 465 VAL A 769 REMARK 465 ALA A 770 REMARK 465 ASP A 771 REMARK 465 ASN A 772 REMARK 465 GLY A 773 REMARK 465 ASP A 774 REMARK 465 VAL A 775 REMARK 465 GLU A 878 REMARK 465 GLU A 879 REMARK 465 PRO A 880 REMARK 465 GLU A 881 REMARK 465 ASP A 882 REMARK 465 VAL A 883 REMARK 465 VAL A 884 REMARK 465 ASP A 885 REMARK 465 GLU A 886 REMARK 465 ALA A 887 REMARK 465 VAL A 888 REMARK 465 ALA A 889 REMARK 465 ILE A 890 REMARK 465 THR A 891 REMARK 465 SER A 892 REMARK 465 ASP A 893 REMARK 465 ALA A 894 REMARK 465 PRO A 895 REMARK 465 PRO A 896 REMARK 465 ALA A 897 REMARK 465 GLU A 898 REMARK 465 GLY A 899 REMARK 465 ARG B 561 REMARK 465 GLY B 562 REMARK 465 GLY B 563 REMARK 465 ARG B 564 REMARK 465 GLY B 565 REMARK 465 ARG B 566 REMARK 465 ALA B 740 REMARK 465 GLY B 741 REMARK 465 GLY B 742 REMARK 465 VAL B 743 REMARK 465 GLU B 744 REMARK 465 ASP B 745 REMARK 465 GLU B 746 REMARK 465 VAL B 747 REMARK 465 GLU B 748 REMARK 465 ASP B 749 REMARK 465 GLU B 750 REMARK 465 SER B 751 REMARK 465 ALA B 752 REMARK 465 GLU B 753 REMARK 465 GLU B 754 REMARK 465 VAL B 755 REMARK 465 VAL B 756 REMARK 465 GLU B 757 REMARK 465 THR B 758 REMARK 465 THR B 759 REMARK 465 ASP B 760 REMARK 465 GLY B 761 REMARK 465 ALA B 762 REMARK 465 GLU B 763 REMARK 465 PRO B 764 REMARK 465 ALA B 765 REMARK 465 VAL B 766 REMARK 465 ILE B 767 REMARK 465 ASP B 768 REMARK 465 VAL B 769 REMARK 465 ALA B 770 REMARK 465 ASP B 771 REMARK 465 ASN B 772 REMARK 465 GLY B 773 REMARK 465 ASP B 774 REMARK 465 SER B 876 REMARK 465 LEU B 877 REMARK 465 GLU B 878 REMARK 465 GLU B 879 REMARK 465 PRO B 880 REMARK 465 GLU B 881 REMARK 465 ASP B 882 REMARK 465 VAL B 883 REMARK 465 VAL B 884 REMARK 465 ASP B 885 REMARK 465 GLU B 886 REMARK 465 ALA B 887 REMARK 465 VAL B 888 REMARK 465 ALA B 889 REMARK 465 ILE B 890 REMARK 465 THR B 891 REMARK 465 SER B 892 REMARK 465 ASP B 893 REMARK 465 ALA B 894 REMARK 465 PRO B 895 REMARK 465 PRO B 896 REMARK 465 ALA B 897 REMARK 465 GLU B 898 REMARK 465 GLY B 899 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 538 CB VAL A 538 CG1 -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 557 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 739 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 797 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 564 51.38 -69.68 REMARK 500 SER A 594 -49.01 -26.31 REMARK 500 PRO A 623 94.11 -62.06 REMARK 500 TYR A 639 63.23 -104.61 REMARK 500 SER A 844 2.83 -67.36 REMARK 500 ALA B 568 0.02 82.02 REMARK 500 LYS B 798 0.04 -154.22 REMARK 500 ARG B 800 129.04 -39.96 REMARK 500 THR B 810 52.99 -106.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 855 VAL B 856 146.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 3L6V A 530 899 UNP Q8PAB1 Q8PAB1_XANCP 530 899 DBREF 3L6V B 530 899 UNP Q8PAB1 Q8PAB1_XANCP 530 899 SEQADV 3L6V MET A 530 UNP Q8PAB1 LEU 530 ENGINEERED MUTATION SEQADV 3L6V MET A 647 UNP Q8PAB1 PHE 647 CONFLICT SEQADV 3L6V MET A 830 UNP Q8PAB1 LEU 830 CONFLICT SEQADV 3L6V MET B 530 UNP Q8PAB1 LEU 530 ENGINEERED MUTATION SEQADV 3L6V MET B 647 UNP Q8PAB1 PHE 647 CONFLICT SEQADV 3L6V MET B 830 UNP Q8PAB1 LEU 830 CONFLICT SEQRES 1 A 370 MET ASP LEU ILE ALA PRO GLU ASP VAL VAL VAL THR LEU SEQRES 2 A 370 SER HIS ALA GLY TYR ALA LYS ARG GLN PRO VAL SER ALA SEQRES 3 A 370 TYR ARG ALA GLN ARG ARG GLY GLY ARG GLY ARG SER ALA SEQRES 4 A 370 ALA SER THR LYS GLU GLU ASP PHE ILE ASP GLN LEU TRP SEQRES 5 A 370 LEU VAL ASN THR HIS ASP THR LEU LEU THR PHE THR SER SEQRES 6 A 370 SER GLY LYS VAL PHE TRP LEU PRO VAL HIS GLN LEU PRO SEQRES 7 A 370 GLU ALA GLY SER ASN ALA ARG GLY ARG PRO ILE ILE ASN SEQRES 8 A 370 TRP ILE PRO LEU GLU SER GLY GLU ARG VAL GLN ALA VAL SEQRES 9 A 370 LEU PRO VAL ARG GLU TYR ALA ASP ASN ARG TYR VAL PHE SEQRES 10 A 370 MET ALA THR ARG ASN GLY THR VAL LYS LYS THR PRO LEU SEQRES 11 A 370 SER GLU PHE ALA PHE ARG LEU ALA ARG GLY LYS ILE ALA SEQRES 12 A 370 ILE ASN LEU ASP GLU GLY ASP ALA LEU VAL GLY VAL ALA SEQRES 13 A 370 LEU THR ASP GLY ASP ARG ASP VAL LEU LEU PHE ALA SER SEQRES 14 A 370 ASN GLY LYS THR VAL ARG PHE GLY GLU SER THR VAL ARG SEQRES 15 A 370 SER MET GLY ARG THR ALA THR GLY VAL ARG GLY ILE ARG SEQRES 16 A 370 LEU ALA LYS GLY GLU GLU VAL VAL SER LEU ILE VAL SER SEQRES 17 A 370 GLU ARG ALA GLY GLY VAL GLU ASP GLU VAL GLU ASP GLU SEQRES 18 A 370 SER ALA GLU GLU VAL VAL GLU THR THR ASP GLY ALA GLU SEQRES 19 A 370 PRO ALA VAL ILE ASP VAL ALA ASP ASN GLY ASP VAL ALA SEQRES 20 A 370 TYR ILE LEU THR ALA THR GLU ASN GLY TYR GLY LYS ARG SEQRES 21 A 370 THR PRO LEU ALA GLU TYR PRO ARG LYS GLY ARG GLY THR SEQRES 22 A 370 GLN GLY VAL ILE GLY ILE GLN THR THR GLU ARG ASN GLY SEQRES 23 A 370 LYS LEU VAL ARG ALA VAL LEU LEU GLY SER THR ASP GLU SEQRES 24 A 370 VAL MET LEU ILE SER ASP GLY GLY THR LEU VAL ARG THR SEQRES 25 A 370 ARG GLY SER GLU ILE SER ARG VAL GLY ARG ASN THR GLN SEQRES 26 A 370 GLY VAL THR LEU ILE ARG LEU SER LYS GLY GLU LYS LEU SEQRES 27 A 370 GLN ALA VAL GLU ARG LEU ASP ALA SER LEU GLU GLU PRO SEQRES 28 A 370 GLU ASP VAL VAL ASP GLU ALA VAL ALA ILE THR SER ASP SEQRES 29 A 370 ALA PRO PRO ALA GLU GLY SEQRES 1 B 370 MET ASP LEU ILE ALA PRO GLU ASP VAL VAL VAL THR LEU SEQRES 2 B 370 SER HIS ALA GLY TYR ALA LYS ARG GLN PRO VAL SER ALA SEQRES 3 B 370 TYR ARG ALA GLN ARG ARG GLY GLY ARG GLY ARG SER ALA SEQRES 4 B 370 ALA SER THR LYS GLU GLU ASP PHE ILE ASP GLN LEU TRP SEQRES 5 B 370 LEU VAL ASN THR HIS ASP THR LEU LEU THR PHE THR SER SEQRES 6 B 370 SER GLY LYS VAL PHE TRP LEU PRO VAL HIS GLN LEU PRO SEQRES 7 B 370 GLU ALA GLY SER ASN ALA ARG GLY ARG PRO ILE ILE ASN SEQRES 8 B 370 TRP ILE PRO LEU GLU SER GLY GLU ARG VAL GLN ALA VAL SEQRES 9 B 370 LEU PRO VAL ARG GLU TYR ALA ASP ASN ARG TYR VAL PHE SEQRES 10 B 370 MET ALA THR ARG ASN GLY THR VAL LYS LYS THR PRO LEU SEQRES 11 B 370 SER GLU PHE ALA PHE ARG LEU ALA ARG GLY LYS ILE ALA SEQRES 12 B 370 ILE ASN LEU ASP GLU GLY ASP ALA LEU VAL GLY VAL ALA SEQRES 13 B 370 LEU THR ASP GLY ASP ARG ASP VAL LEU LEU PHE ALA SER SEQRES 14 B 370 ASN GLY LYS THR VAL ARG PHE GLY GLU SER THR VAL ARG SEQRES 15 B 370 SER MET GLY ARG THR ALA THR GLY VAL ARG GLY ILE ARG SEQRES 16 B 370 LEU ALA LYS GLY GLU GLU VAL VAL SER LEU ILE VAL SER SEQRES 17 B 370 GLU ARG ALA GLY GLY VAL GLU ASP GLU VAL GLU ASP GLU SEQRES 18 B 370 SER ALA GLU GLU VAL VAL GLU THR THR ASP GLY ALA GLU SEQRES 19 B 370 PRO ALA VAL ILE ASP VAL ALA ASP ASN GLY ASP VAL ALA SEQRES 20 B 370 TYR ILE LEU THR ALA THR GLU ASN GLY TYR GLY LYS ARG SEQRES 21 B 370 THR PRO LEU ALA GLU TYR PRO ARG LYS GLY ARG GLY THR SEQRES 22 B 370 GLN GLY VAL ILE GLY ILE GLN THR THR GLU ARG ASN GLY SEQRES 23 B 370 LYS LEU VAL ARG ALA VAL LEU LEU GLY SER THR ASP GLU SEQRES 24 B 370 VAL MET LEU ILE SER ASP GLY GLY THR LEU VAL ARG THR SEQRES 25 B 370 ARG GLY SER GLU ILE SER ARG VAL GLY ARG ASN THR GLN SEQRES 26 B 370 GLY VAL THR LEU ILE ARG LEU SER LYS GLY GLU LYS LEU SEQRES 27 B 370 GLN ALA VAL GLU ARG LEU ASP ALA SER LEU GLU GLU PRO SEQRES 28 B 370 GLU ASP VAL VAL ASP GLU ALA VAL ALA ILE THR SER ASP SEQRES 29 B 370 ALA PRO PRO ALA GLU GLY FORMUL 3 HOH *176(H2 O) HELIX 1 1 VAL A 553 GLN A 559 1 7 HELIX 2 2 HIS A 604 LEU A 606 5 3 HELIX 3 3 ILE A 619 TRP A 621 5 3 HELIX 4 4 SER A 660 ALA A 663 5 4 HELIX 5 5 SER A 708 VAL A 710 5 3 HELIX 6 6 ALA A 793 TYR A 795 5 3 HELIX 7 7 SER A 844 ILE A 846 5 3 HELIX 8 8 VAL B 553 GLN B 559 1 7 HELIX 9 9 SER B 570 GLU B 574 5 5 HELIX 10 10 HIS B 604 LEU B 606 5 3 HELIX 11 11 ILE B 619 TRP B 621 5 3 HELIX 12 12 SER B 660 ALA B 663 5 4 HELIX 13 13 SER B 708 VAL B 710 5 3 HELIX 14 14 ALA B 793 TYR B 795 5 3 HELIX 15 15 SER B 844 ILE B 846 5 3 SHEET 1 A 4 ILE A 577 VAL A 583 0 SHEET 2 A 4 VAL A 538 SER A 543 -1 N VAL A 540 O TRP A 581 SHEET 3 A 4 TYR A 547 PRO A 552 -1 O GLN A 551 N VAL A 539 SHEET 4 A 4 ARG A 616 PRO A 617 -1 O ARG A 616 N ALA A 548 SHEET 1 B 4 SER A 567 SER A 570 0 SHEET 2 B 4 LEU A 838 ARG A 842 -1 O LEU A 838 N SER A 570 SHEET 3 B 4 GLU A 828 SER A 833 -1 N VAL A 829 O THR A 841 SHEET 4 B 4 LEU A 867 LEU A 873 -1 O ALA A 869 N ILE A 832 SHEET 1 C 4 VAL A 630 VAL A 636 0 SHEET 2 C 4 THR A 588 THR A 593 -1 N LEU A 590 O LEU A 634 SHEET 3 C 4 LYS A 597 PRO A 602 -1 O LEU A 601 N LEU A 589 SHEET 4 C 4 LYS A 670 ILE A 671 -1 O LYS A 670 N VAL A 598 SHEET 1 D 4 LEU A 681 THR A 687 0 SHEET 2 D 4 TYR A 644 THR A 649 -1 N PHE A 646 O ALA A 685 SHEET 3 D 4 THR A 653 PRO A 658 -1 O THR A 657 N VAL A 645 SHEET 4 D 4 VAL A 720 ARG A 721 -1 O VAL A 720 N VAL A 654 SHEET 1 E 4 VAL A 731 SER A 737 0 SHEET 2 E 4 ASP A 692 ALA A 697 -1 N PHE A 696 O VAL A 732 SHEET 3 E 4 LYS A 701 GLY A 706 -1 O PHE A 705 N VAL A 693 SHEET 4 E 4 VAL A 805 ILE A 806 -1 O VAL A 805 N THR A 702 SHEET 1 F 4 LEU A 817 LEU A 823 0 SHEET 2 F 4 TYR A 777 THR A 782 -1 N LEU A 779 O VAL A 821 SHEET 3 F 4 TYR A 786 PRO A 791 -1 O THR A 790 N ILE A 778 SHEET 4 F 4 VAL A 856 THR A 857 -1 O VAL A 856 N GLY A 787 SHEET 1 G 4 ILE B 577 VAL B 583 0 SHEET 2 G 4 VAL B 538 SER B 543 -1 N VAL B 538 O VAL B 583 SHEET 3 G 4 TYR B 547 PRO B 552 -1 O GLN B 551 N VAL B 539 SHEET 4 G 4 ARG B 616 PRO B 617 -1 O ARG B 616 N ALA B 548 SHEET 1 H 4 VAL B 630 VAL B 636 0 SHEET 2 H 4 THR B 588 THR B 593 -1 N LEU B 590 O LEU B 634 SHEET 3 H 4 LYS B 597 PRO B 602 -1 O LEU B 601 N LEU B 589 SHEET 4 H 4 LYS B 670 ILE B 671 -1 O LYS B 670 N VAL B 598 SHEET 1 I 4 LEU B 681 THR B 687 0 SHEET 2 I 4 TYR B 644 THR B 649 -1 N ALA B 648 O VAL B 682 SHEET 3 I 4 THR B 653 PRO B 658 -1 O THR B 657 N VAL B 645 SHEET 4 I 4 VAL B 720 ARG B 721 -1 O VAL B 720 N VAL B 654 SHEET 1 J 4 VAL B 731 SER B 737 0 SHEET 2 J 4 ASP B 692 ALA B 697 -1 N LEU B 694 O ILE B 735 SHEET 3 J 4 LYS B 701 GLY B 706 -1 O LYS B 701 N ALA B 697 SHEET 4 J 4 VAL B 805 ILE B 806 -1 O VAL B 805 N THR B 702 SHEET 1 K 4 LEU B 817 LEU B 823 0 SHEET 2 K 4 TYR B 777 THR B 782 -1 N ALA B 781 O VAL B 818 SHEET 3 K 4 TYR B 786 PRO B 791 -1 O THR B 790 N ILE B 778 SHEET 4 K 4 VAL B 856 THR B 857 -1 O VAL B 856 N GLY B 787 SHEET 1 L 3 LEU B 838 ARG B 842 0 SHEET 2 L 3 GLU B 828 SER B 833 -1 N VAL B 829 O THR B 841 SHEET 3 L 3 LEU B 867 LEU B 873 -1 O GLU B 871 N MET B 830 CRYST1 52.494 58.968 74.415 79.00 79.78 69.62 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019050 -0.007076 -0.002470 0.00000 SCALE2 0.000000 0.018091 -0.002555 0.00000 SCALE3 0.000000 0.000000 0.013791 0.00000