HEADER CELL ADHESION 27-DEC-09 3L6X TITLE CRYSTAL STRUCTURE OF P120 CATENIN IN COMPLEX WITH E-CADHERIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATENIN DELTA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P120 CATENIN ISOFORM 4A; COMPND 5 SYNONYM: P120 CATENIN, P120(CTN), CADHERIN-ASSOCIATED SRC SUBSTRATE, COMPND 6 CAS, P120(CAS); COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: E-CADHERIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: E-CADHERIN JUXTAMEMBRANE DOMAIN CORE REGION; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTNND1, KIAA0384; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS P120, CATENIN, CADHERIN, E-CADHERIN, ARMADILLO, ARM, JMD, CELL KEYWDS 2 ADHESION, COMPLEX, CELL-CELL ADHESION, ARVCF, DELTA-CATENIN, P0071, KEYWDS 3 DP120, JAC-1, CELL MEMBRANE, MEMBRANE, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 4 TRANSCRIPTION, TRANSCRIPTION REGULATION, WNT SIGNALING PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR N.ISHIYAMA,S.-H.LEE,S.LIU,G.-Y.LI,M.J.SMITH,L.F.REICHARDT,M.IKURA REVDAT 4 06-SEP-23 3L6X 1 REMARK SEQADV REVDAT 3 01-NOV-17 3L6X 1 REMARK REVDAT 2 13-JUL-11 3L6X 1 VERSN REVDAT 1 21-APR-10 3L6X 0 JRNL AUTH N.ISHIYAMA,S.H.LEE,S.LIU,G.Y.LI,M.J.SMITH,L.F.REICHARDT, JRNL AUTH 2 M.IKURA JRNL TITL DYNAMIC AND STATIC INTERACTIONS BETWEEN P120 CATENIN AND JRNL TITL 2 E-CADHERIN REGULATE THE STABILITY OF CELL-CELL ADHESION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 141 117 2010 JRNL REFN ISSN 0092-8674 JRNL PMID 20371349 JRNL DOI 10.1016/J.CELL.2010.01.017 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1707 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2285 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21000 REMARK 3 B22 (A**2) : 1.21000 REMARK 3 B33 (A**2) : -1.81000 REMARK 3 B12 (A**2) : 0.60000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.904 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3603 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4887 ; 1.340 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 5.122 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;36.205 ;24.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 632 ;14.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;23.102 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 557 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2698 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2258 ; 0.644 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3622 ; 1.246 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1345 ; 2.148 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1263 ; 3.600 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 358 A 509 REMARK 3 ORIGIN FOR THE GROUP (A): -35.3410 7.5150 33.9240 REMARK 3 T TENSOR REMARK 3 T11: 0.0065 T22: -0.1578 REMARK 3 T33: -0.1340 T12: 0.0742 REMARK 3 T13: -0.0749 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 1.4884 L22: 1.0981 REMARK 3 L33: 3.3952 L12: 0.1433 REMARK 3 L13: 1.4342 L23: 0.6994 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.0302 S13: -0.0490 REMARK 3 S21: 0.2536 S22: 0.1824 S23: -0.1343 REMARK 3 S31: 0.3733 S32: 0.2466 S33: -0.2301 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 520 A 599 REMARK 3 ORIGIN FOR THE GROUP (A): -49.0650 11.5790 12.7810 REMARK 3 T TENSOR REMARK 3 T11: -0.0604 T22: -0.1441 REMARK 3 T33: -0.1115 T12: -0.0085 REMARK 3 T13: -0.0473 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 1.5386 L22: 2.3321 REMARK 3 L33: 3.5181 L12: 0.1448 REMARK 3 L13: 0.0289 L23: 0.5096 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: 0.1434 S13: 0.0345 REMARK 3 S21: -0.0818 S22: 0.0499 S23: 0.0801 REMARK 3 S31: 0.0165 S32: -0.0782 S33: -0.0873 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 645 A 846 REMARK 3 ORIGIN FOR THE GROUP (A): -41.4830 25.2220 -8.6110 REMARK 3 T TENSOR REMARK 3 T11: -0.0188 T22: -0.0055 REMARK 3 T33: -0.0277 T12: -0.0428 REMARK 3 T13: -0.0337 T23: 0.0867 REMARK 3 L TENSOR REMARK 3 L11: 3.6059 L22: 1.2678 REMARK 3 L33: 1.4182 L12: 1.1805 REMARK 3 L13: -1.2499 L23: -0.7519 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: 0.5664 S13: 0.2629 REMARK 3 S21: -0.0470 S22: 0.1892 S23: 0.0361 REMARK 3 S31: -0.1414 S32: -0.1321 S33: -0.1715 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 758 B 775 REMARK 3 ORIGIN FOR THE GROUP (A): -32.4810 15.9670 39.1430 REMARK 3 T TENSOR REMARK 3 T11: 0.0051 T22: -0.0039 REMARK 3 T33: -0.0149 T12: 0.0230 REMARK 3 T13: -0.0421 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 0.5846 L22: 0.6607 REMARK 3 L33: 10.3466 L12: 0.3731 REMARK 3 L13: 2.2751 L23: 0.7098 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: 0.0628 S13: 0.0499 REMARK 3 S21: 0.0020 S22: -0.0079 S23: -0.0208 REMARK 3 S31: 0.0651 S32: 0.1307 S33: 0.0208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33911 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39400 REMARK 200 FOR SHELL : 7.088 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.3 REMARK 200 STARTING MODEL: PDB ENTRY 1XM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 1.8 M AMMONIUM REMARK 280 SULFATE, 3% METHANOL, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.29667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.59333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.59333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.29667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 PRO A 321 REMARK 465 GLU A 322 REMARK 465 PHE A 323 REMARK 465 MET A 324 REMARK 465 ILE A 325 REMARK 465 GLY A 326 REMARK 465 GLU A 327 REMARK 465 GLU A 328 REMARK 465 VAL A 329 REMARK 465 PRO A 330 REMARK 465 SER A 331 REMARK 465 ASP A 332 REMARK 465 GLN A 333 REMARK 465 TYR A 334 REMARK 465 TYR A 335 REMARK 465 TRP A 336 REMARK 465 ALA A 337 REMARK 465 PRO A 338 REMARK 465 LEU A 339 REMARK 465 ALA A 340 REMARK 465 GLN A 341 REMARK 465 HIS A 342 REMARK 465 GLU A 343 REMARK 465 ARG A 344 REMARK 465 GLY A 345 REMARK 465 SER A 346 REMARK 465 LEU A 347 REMARK 465 ALA A 348 REMARK 465 SER A 349 REMARK 465 LEU A 350 REMARK 465 ASP A 351 REMARK 465 SER A 352 REMARK 465 LEU A 353 REMARK 465 ARG A 354 REMARK 465 LYS A 355 REMARK 465 GLY A 356 REMARK 465 GLY A 357 REMARK 465 ARG A 510 REMARK 465 GLU A 511 REMARK 465 PRO A 512 REMARK 465 ASN A 513 REMARK 465 GLU A 514 REMARK 465 ASP A 515 REMARK 465 CYS A 516 REMARK 465 LYS A 517 REMARK 465 PRO A 518 REMARK 465 ARG A 519 REMARK 465 TYR A 631 REMARK 465 GLN A 632 REMARK 465 GLU A 633 REMARK 465 ALA A 634 REMARK 465 ALA A 635 REMARK 465 PRO A 636 REMARK 465 ASN A 637 REMARK 465 VAL A 638 REMARK 465 ALA A 639 REMARK 465 ASN A 640 REMARK 465 ASN A 641 REMARK 465 THR A 642 REMARK 465 GLY A 643 REMARK 465 THR A 644 REMARK 465 LEU A 847 REMARK 465 ASN A 848 REMARK 465 ASN A 849 REMARK 465 ALA A 850 REMARK 465 SER A 851 REMARK 465 ARG A 852 REMARK 465 SER A 853 REMARK 465 GLN A 854 REMARK 465 SER A 855 REMARK 465 SER A 856 REMARK 465 HIS A 857 REMARK 465 SER A 858 REMARK 465 TYR A 859 REMARK 465 ASP A 860 REMARK 465 ASP A 861 REMARK 465 SER A 862 REMARK 465 THR A 863 REMARK 465 LEU A 864 REMARK 465 PRO A 865 REMARK 465 LEU A 866 REMARK 465 ILE A 867 REMARK 465 ASP A 868 REMARK 465 ARG A 869 REMARK 465 ASN A 870 REMARK 465 GLN A 871 REMARK 465 LYS A 872 REMARK 465 SER A 873 REMARK 465 ASP A 874 REMARK 465 LYS A 875 REMARK 465 LYS A 876 REMARK 465 PRO A 877 REMARK 465 ASP A 878 REMARK 465 ARG A 879 REMARK 465 GLU A 880 REMARK 465 GLU A 881 REMARK 465 ILE A 882 REMARK 465 GLN A 883 REMARK 465 MET A 884 REMARK 465 SER A 885 REMARK 465 ASN A 886 REMARK 465 MET A 887 REMARK 465 GLY A 888 REMARK 465 SER A 889 REMARK 465 ASN A 890 REMARK 465 THR A 891 REMARK 465 LYS A 892 REMARK 465 SER A 893 REMARK 465 LEU A 894 REMARK 465 ASP A 895 REMARK 465 ASN A 896 REMARK 465 ASN A 897 REMARK 465 TYR A 898 REMARK 465 SER A 899 REMARK 465 THR A 900 REMARK 465 PRO A 901 REMARK 465 ASN A 902 REMARK 465 GLU A 903 REMARK 465 ARG A 904 REMARK 465 GLY A 905 REMARK 465 ASP A 906 REMARK 465 HIS A 907 REMARK 465 ASN A 908 REMARK 465 ARG A 909 REMARK 465 THR A 910 REMARK 465 LEU A 911 REMARK 465 ASP A 912 REMARK 465 ARG A 913 REMARK 465 SER A 914 REMARK 465 GLY A 915 REMARK 465 ASP A 916 REMARK 465 LEU A 917 REMARK 465 GLY A 918 REMARK 465 ASP A 919 REMARK 465 MET A 920 REMARK 465 GLU A 921 REMARK 465 PRO A 922 REMARK 465 LEU A 923 REMARK 465 LYS A 924 REMARK 465 GLY A 925 REMARK 465 THR A 926 REMARK 465 THR A 927 REMARK 465 PRO A 928 REMARK 465 LEU A 929 REMARK 465 MET A 930 REMARK 465 GLN A 931 REMARK 465 LYS A 932 REMARK 465 ILE A 933 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 378 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 LYS A 408 CD CE NZ REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 ARG A 439 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 670 CD CE NZ REMARK 470 ARG A 689 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 743 CD CE NZ REMARK 470 LYS A 827 CG CD CE NZ REMARK 470 GLU A 828 CG CD OE1 OE2 REMARK 470 LYS A 831 CD CE NZ REMARK 470 LYS A 835 CG CD CE NZ REMARK 470 LYS A 840 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 565 OD2 ASP A 570 2.08 REMARK 500 NH2 ARG A 736 O HOH A 103 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 545 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 546 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 549 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 549 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 541 112.70 76.73 REMARK 500 ALA A 597 106.98 -48.37 REMARK 500 GLU A 598 -14.15 -148.18 REMARK 500 ARG A 701 35.55 -86.68 REMARK 500 ARG A 736 -15.37 -145.13 REMARK 500 LYS A 738 -39.94 -33.92 REMARK 500 GLN A 758 104.28 -58.26 REMARK 500 ASN A 783 79.25 -156.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L6Y RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS ENTRY MATCHES THE SEQUENCE OF ISOFORM 1A WITH REMARK 999 UNIPROT IDENTIFIER O60716-5. RESIDUES 626-631 (EXON C) OF O60716 REMARK 999 ARE NOT PART OF ISOFORM 1A. DBREF 3L6X A 324 931 UNP O60716 CTND1_HUMAN 324 937 DBREF 3L6X B 758 775 PDB 3L6X 3L6X 758 775 SEQADV 3L6X GLY A 319 UNP O60716 EXPRESSION TAG SEQADV 3L6X SER A 320 UNP O60716 EXPRESSION TAG SEQADV 3L6X PRO A 321 UNP O60716 EXPRESSION TAG SEQADV 3L6X GLU A 322 UNP O60716 EXPRESSION TAG SEQADV 3L6X PHE A 323 UNP O60716 EXPRESSION TAG SEQADV 3L6X A UNP O60716 PRO 613 DELETION SEQADV 3L6X A UNP O60716 HIS 614 DELETION SEQADV 3L6X A UNP O60716 ALA 615 DELETION SEQADV 3L6X A UNP O60716 ALA 616 DELETION SEQADV 3L6X A UNP O60716 SER 617 DELETION SEQADV 3L6X A UNP O60716 CYS 618 DELETION SEQADV 3L6X A UNP O60716 PHE 619 DELETION SEQADV 3L6X A UNP O60716 GLY 620 DELETION SEQADV 3L6X A UNP O60716 ALA 621 DELETION SEQADV 3L6X A UNP O60716 LYS 622 DELETION SEQADV 3L6X A UNP O60716 LYS 623 DELETION SEQADV 3L6X A UNP O60716 GLY 624 DELETION SEQADV 3L6X A UNP O60716 LYS 625 DELETION SEQADV 3L6X A UNP O60716 ASP 626 SEE REMARK 999 SEQADV 3L6X A UNP O60716 GLU 627 SEE REMARK 999 SEQADV 3L6X A UNP O60716 TRP 628 SEE REMARK 999 SEQADV 3L6X A UNP O60716 PHE 629 SEE REMARK 999 SEQADV 3L6X A UNP O60716 SER 630 SEE REMARK 999 SEQADV 3L6X A UNP O60716 ARG 631 SEE REMARK 999 SEQADV 3L6X A UNP O60716 GLY 632 DELETION SEQADV 3L6X A UNP O60716 LYS 633 DELETION SEQADV 3L6X A UNP O60716 LYS 634 DELETION SEQADV 3L6X A UNP O60716 PRO 635 DELETION SEQADV 3L6X A UNP O60716 ILE 636 DELETION SEQADV 3L6X A UNP O60716 GLU 637 DELETION SEQADV 3L6X A UNP O60716 ASP 638 DELETION SEQADV 3L6X A UNP O60716 PRO 639 DELETION SEQADV 3L6X A UNP O60716 ALA 640 DELETION SEQADV 3L6X A UNP O60716 ASN 641 DELETION SEQADV 3L6X A UNP O60716 ASP 642 DELETION SEQADV 3L6X A UNP O60716 THR 643 DELETION SEQADV 3L6X A UNP O60716 VAL 644 DELETION SEQADV 3L6X A UNP O60716 ASP 645 DELETION SEQADV 3L6X A UNP O60716 PHE 646 DELETION SEQADV 3L6X A UNP O60716 PRO 647 DELETION SEQADV 3L6X A UNP O60716 LYS 648 DELETION SEQADV 3L6X A UNP O60716 ARG 649 DELETION SEQADV 3L6X LYS A 932 UNP O60716 SEE REMARK 999 SEQADV 3L6X ILE A 933 UNP O60716 SEE REMARK 999 SEQRES 1 A 584 GLY SER PRO GLU PHE MET ILE GLY GLU GLU VAL PRO SER SEQRES 2 A 584 ASP GLN TYR TYR TRP ALA PRO LEU ALA GLN HIS GLU ARG SEQRES 3 A 584 GLY SER LEU ALA SER LEU ASP SER LEU ARG LYS GLY GLY SEQRES 4 A 584 PRO PRO PRO PRO ASN TRP ARG GLN PRO GLU LEU PRO GLU SEQRES 5 A 584 VAL ILE ALA MET LEU GLY PHE ARG LEU ASP ALA VAL LYS SEQRES 6 A 584 SER ASN ALA ALA ALA TYR LEU GLN HIS LEU CYS TYR ARG SEQRES 7 A 584 ASN ASP LYS VAL LYS THR ASP VAL ARG LYS LEU LYS GLY SEQRES 8 A 584 ILE PRO VAL LEU VAL GLY LEU LEU ASP HIS PRO LYS LYS SEQRES 9 A 584 GLU VAL HIS LEU GLY ALA CYS GLY ALA LEU LYS ASN ILE SEQRES 10 A 584 SER PHE GLY ARG ASP GLN ASP ASN LYS ILE ALA ILE LYS SEQRES 11 A 584 ASN CYS ASP GLY VAL PRO ALA LEU VAL ARG LEU LEU ARG SEQRES 12 A 584 LYS ALA ARG ASP MET ASP LEU THR GLU VAL ILE THR GLY SEQRES 13 A 584 THR LEU TRP ASN LEU SER SER HIS ASP SER ILE LYS MET SEQRES 14 A 584 GLU ILE VAL ASP HIS ALA LEU HIS ALA LEU THR ASP GLU SEQRES 15 A 584 VAL ILE ILE PRO HIS SER GLY TRP GLU ARG GLU PRO ASN SEQRES 16 A 584 GLU ASP CYS LYS PRO ARG HIS ILE GLU TRP GLU SER VAL SEQRES 17 A 584 LEU THR ASN THR ALA GLY CYS LEU ARG ASN VAL SER SER SEQRES 18 A 584 GLU ARG SER GLU ALA ARG ARG LYS LEU ARG GLU CYS ASP SEQRES 19 A 584 GLY LEU VAL ASP ALA LEU ILE PHE ILE VAL GLN ALA GLU SEQRES 20 A 584 ILE GLY GLN LYS ASP SER ASP SER LYS LEU VAL GLU ASN SEQRES 21 A 584 CYS VAL CYS LEU LEU ARG ASN LEU SER TYR GLN VAL HIS SEQRES 22 A 584 ARG GLU ILE PRO GLN ALA GLU ARG TYR GLN GLU ALA ALA SEQRES 23 A 584 PRO ASN VAL ALA ASN ASN THR GLY THR SER PRO ALA ARG SEQRES 24 A 584 GLY TYR GLU LEU LEU PHE GLN PRO GLU VAL VAL ARG ILE SEQRES 25 A 584 TYR ILE SER LEU LEU LYS GLU SER LYS THR PRO ALA ILE SEQRES 26 A 584 LEU GLU ALA SER ALA GLY ALA ILE GLN ASN LEU CYS ALA SEQRES 27 A 584 GLY ARG TRP THR TYR GLY ARG TYR ILE ARG SER ALA LEU SEQRES 28 A 584 ARG GLN GLU LYS ALA LEU SER ALA ILE ALA ASP LEU LEU SEQRES 29 A 584 THR ASN GLU HIS GLU ARG VAL VAL LYS ALA ALA SER GLY SEQRES 30 A 584 ALA LEU ARG ASN LEU ALA VAL ASP ALA ARG ASN LYS GLU SEQRES 31 A 584 LEU ILE GLY LYS HIS ALA ILE PRO ASN LEU VAL LYS ASN SEQRES 32 A 584 LEU PRO GLY GLY GLN GLN ASN SER SER TRP ASN PHE SER SEQRES 33 A 584 GLU ASP THR VAL ILE SER ILE LEU ASN THR ILE ASN GLU SEQRES 34 A 584 VAL ILE ALA GLU ASN LEU GLU ALA ALA LYS LYS LEU ARG SEQRES 35 A 584 GLU THR GLN GLY ILE GLU LYS LEU VAL LEU ILE ASN LYS SEQRES 36 A 584 SER GLY ASN ARG SER GLU LYS GLU VAL ARG ALA ALA ALA SEQRES 37 A 584 LEU VAL LEU GLN THR ILE TRP GLY TYR LYS GLU LEU ARG SEQRES 38 A 584 LYS PRO LEU GLU LYS GLU GLY TRP LYS LYS SER ASP PHE SEQRES 39 A 584 GLN VAL ASN LEU ASN ASN ALA SER ARG SER GLN SER SER SEQRES 40 A 584 HIS SER TYR ASP ASP SER THR LEU PRO LEU ILE ASP ARG SEQRES 41 A 584 ASN GLN LYS SER ASP LYS LYS PRO ASP ARG GLU GLU ILE SEQRES 42 A 584 GLN MET SER ASN MET GLY SER ASN THR LYS SER LEU ASP SEQRES 43 A 584 ASN ASN TYR SER THR PRO ASN GLU ARG GLY ASP HIS ASN SEQRES 44 A 584 ARG THR LEU ASP ARG SER GLY ASP LEU GLY ASP MET GLU SEQRES 45 A 584 PRO LEU LYS GLY THR THR PRO LEU MET GLN LYS ILE SEQRES 1 B 18 ASP GLU GLU GLY GLY GLY GLU GLU ASP GLN ASP PHE ASP SEQRES 2 B 18 LEU SER GLN LEU HIS HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 A 3 5 HET SO4 A 4 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *117(H2 O) HELIX 1 1 GLU A 367 LEU A 375 1 9 HELIX 2 2 LEU A 379 TYR A 395 1 17 HELIX 3 3 ASN A 397 LEU A 407 1 11 HELIX 4 4 LYS A 408 LEU A 416 1 9 HELIX 5 5 LEU A 417 HIS A 419 5 3 HELIX 6 6 LYS A 421 SER A 436 1 16 HELIX 7 7 ASP A 440 CYS A 450 1 11 HELIX 8 8 ASP A 451 ALA A 463 1 13 HELIX 9 9 ASP A 465 SER A 480 1 16 HELIX 10 10 SER A 481 SER A 484 5 4 HELIX 11 11 ILE A 485 ALA A 493 1 9 HELIX 12 12 ALA A 493 VAL A 501 1 9 HELIX 13 13 VAL A 501 GLY A 507 1 7 HELIX 14 14 TRP A 523 SER A 538 1 16 HELIX 15 15 ARG A 541 CYS A 551 1 11 HELIX 16 16 GLY A 553 GLN A 568 1 16 HELIX 17 17 SER A 573 TYR A 588 1 16 HELIX 18 18 GLN A 589 ILE A 594 1 6 HELIX 19 19 ARG A 648 PHE A 654 5 7 HELIX 20 20 GLN A 655 SER A 669 1 15 HELIX 21 21 THR A 671 ALA A 687 1 17 HELIX 22 22 TRP A 690 ARG A 701 1 12 HELIX 23 23 GLN A 702 LEU A 712 1 11 HELIX 24 24 LEU A 713 ASN A 715 5 3 HELIX 25 25 HIS A 717 VAL A 733 1 17 HELIX 26 26 ASN A 737 ASN A 752 1 16 HELIX 27 27 ASN A 759 ASN A 763 5 5 HELIX 28 28 SER A 765 ALA A 781 1 17 HELIX 29 29 ASN A 783 THR A 793 1 11 HELIX 30 30 GLN A 794 LYS A 804 1 11 HELIX 31 31 SER A 809 GLY A 825 1 17 HELIX 32 32 TYR A 826 LYS A 835 1 10 HELIX 33 33 LYS A 839 GLN A 844 5 6 HELIX 34 34 ASP B 770 LEU B 774 5 5 SITE 1 AC1 3 HIS A 717 GLU A 718 ARG A 719 SITE 1 AC2 4 HOH A 26 GLU A 540 ARG A 541 ARG A 545 SITE 1 AC3 6 HOH A 83 HOH A 111 GLN A 365 TYR A 389 SITE 2 AC3 6 HIS A 392 TYR A 695 SITE 1 AC4 4 GLY A 756 GLN A 757 GLN A 758 LYS A 798 CRYST1 92.403 92.403 171.890 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010822 0.006248 0.000000 0.00000 SCALE2 0.000000 0.012496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005818 0.00000