HEADER    TRANSCRIPTION                           28-DEC-09   3L78              
TITLE     THE CRYSTAL STRUCTURE OF SMU.1142C FROM STREPTOCOCCUS MUTANS UA159    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: REGULATORY PROTEIN SPX;                                    
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 1-120;                                            
COMPND   5 SYNONYM: PUTATIVE TRANSCRIPTIONAL FACTOR SPXA;                       
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS;                           
SOURCE   3 ORGANISM_TAXID: 210007;                                              
SOURCE   4 STRAIN: UA159;                                                       
SOURCE   5 GENE: SMU.1142C (AMINO ACIDS 1-120);                                 
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET21B                                    
KEYWDS    TRANSCRIPTION, TRANSCRIPTIONAL FACTOR, STREPTOCOCCUS MUTANS,          
KEYWDS   2 DISULFIDE BOND, REDOX-ACTIVE CENTER, TRANSCRIPTION REGULATION        
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    X.LIU,T.M.FU,X.-D.SU                                                  
REVDAT   3   20-NOV-24 3L78    1       REMARK                                   
REVDAT   2   01-NOV-23 3L78    1       REMARK                                   
REVDAT   1   08-DEC-10 3L78    0                                                
JRNL        AUTH   X.LIU,T.M.FU,X.-D.SU                                         
JRNL        TITL   THE CRYSTAL STRUCTURE OF SMU.1142C FROM STREPTOCOCCUS MUTANS 
JRNL        TITL 2 UA159                                                        
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE)                               
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 36.32                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.100                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 97.4                           
REMARK   3   NUMBER OF REFLECTIONS             : 9828                           
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.191                           
REMARK   3   R VALUE            (WORKING SET) : 0.186                           
REMARK   3   FREE R VALUE                     : 0.232                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 10.180                          
REMARK   3   FREE R VALUE TEST SET COUNT      : 1000                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 36.3251 -  3.6335    1.00     1380   155  0.1858 0.2020        
REMARK   3     2  3.6335 -  2.8844    0.99     1300   151  0.1883 0.2634        
REMARK   3     3  2.8844 -  2.5199    0.99     1283   140  0.2062 0.2461        
REMARK   3     4  2.5199 -  2.2896    0.98     1255   140  0.1719 0.2366        
REMARK   3     5  2.2896 -  2.1255    0.96     1235   142  0.1603 0.2018        
REMARK   3     6  2.1255 -  2.0002    0.96     1217   133  0.1643 0.2404        
REMARK   3     7  2.0002 -  1.9000    0.93     1158   139  0.1923 0.2877        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : 0.38                                          
REMARK   3   B_SOL              : 57.45                                         
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.290            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.890           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 26.50                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 33.02                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -1.06800                                             
REMARK   3    B22 (A**2) : 8.91200                                              
REMARK   3    B33 (A**2) : -7.84400                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.004            972                                  
REMARK   3   ANGLE     :  0.813           1317                                  
REMARK   3   CHIRALITY :  0.056            155                                  
REMARK   3   PLANARITY :  0.003            171                                  
REMARK   3   DIHEDRAL  : 15.555            375                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 1                                          
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    SELECTION: ALL                                                    
REMARK   3    ORIGIN FOR THE GROUP (A):  -1.8340  -5.7840   3.7930              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.1273 T22:   0.1431                                     
REMARK   3      T33:   0.1188 T12:  -0.0021                                     
REMARK   3      T13:  -0.0081 T23:   0.0053                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.6367 L22:   0.6599                                     
REMARK   3      L33:  -0.0203 L12:  -0.3010                                     
REMARK   3      L13:   0.1980 L23:   0.0859                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0925 S12:  -0.0775 S13:  -0.0351                       
REMARK   3      S21:   0.0590 S22:   0.0459 S23:   0.0214                       
REMARK   3      S31:  -0.0929 S32:   0.0332 S33:   0.0306                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 3L78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000056920.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 16-DEC-09                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 8.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : BSRF                               
REMARK 200  BEAMLINE                       : 3W1A                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0000                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MAR CCD 165 MM                     
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 9865                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.900                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : 13.30                              
REMARK 200  R MERGE                    (I) : 0.07000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 10.7000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.93                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.8                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 8.80                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.31900                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ENTRY 1Z3E                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 43.35                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.85 NANO3, 0.1M NACAD PH 6.5, 15% PEG   
REMARK 280  3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K, PH 8.5       
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       22.78250            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       28.19800            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       23.73650            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       28.19800            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       22.78250            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       23.73650            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     TYR A   118                                                      
REMARK 465     ARG A   119                                                      
REMARK 465     LYS A   120                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A  62    CE   NZ                                             
REMARK 470     GLN A  65    CG   CD   OE1  NE2                                  
REMARK 470     LYS A  85    CG   CD   CE   NZ                                   
REMARK 470     ARG A 116    CG   CD   NE   CZ   NH1  NH2                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    SER A  58       76.51    -69.54                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  3L78 A    1   120  UNP    Q8DU17   SPX_STRMU        1    120             
SEQRES   1 A  120  MET VAL THR LEU PHE LEU SER PRO SER CYS THR SER CYS          
SEQRES   2 A  120  ARG LYS ALA ARG ALA TRP LEU ASN ARG HIS ASP VAL VAL          
SEQRES   3 A  120  PHE GLN GLU HIS ASN ILE MET THR SER PRO LEU SER ARG          
SEQRES   4 A  120  ASP GLU LEU LEU LYS ILE LEU SER TYR THR GLU ASN GLY          
SEQRES   5 A  120  THR GLU ASP ILE ILE SER THR ARG SER LYS VAL PHE GLN          
SEQRES   6 A  120  LYS LEU ASP ILE ASP VAL ASP GLU LEU SER VAL SER GLU          
SEQRES   7 A  120  LEU ILE ASN LEU ILE SER LYS ASN PRO SER LEU LEU ARG          
SEQRES   8 A  120  ARG PRO ILE ILE MET ASP ASN LYS ARG MET GLN ILE GLY          
SEQRES   9 A  120  PHE ASN GLU ASP GLU ILE ARG ALA PHE LEU PRO ARG ASP          
SEQRES  10 A  120  TYR ARG LYS                                                  
FORMUL   2  HOH   *46(H2 O)                                                     
HELIX    1   1 CYS A   10  HIS A   23  1                                  14    
HELIX    2   2 SER A   38  THR A   49  1                                  12    
HELIX    3   3 GLY A   52  ILE A   57  1                                   6    
HELIX    4   4 SER A   61  LEU A   67  1                                   7    
HELIX    5   5 ASP A   70  LEU A   74  5                                   5    
HELIX    6   6 SER A   75  ASN A   86  1                                  12    
HELIX    7   7 PRO A   87  LEU A   90  5                                   4    
HELIX    8   8 ASP A  108  LEU A  114  5                                   7    
SHEET    1   A 4 PHE A  27  ASN A  31  0                                        
SHEET    2   A 4 VAL A   2  LEU A   6  1  N  LEU A   4   O  HIS A  30           
SHEET    3   A 4 ILE A  94  MET A  96 -1  O  ILE A  94   N  PHE A   5           
SHEET    4   A 4 MET A 101  ILE A 103 -1  O  GLN A 102   N  ILE A  95           
SSBOND   1 CYS A   10    CYS A   13                          1555   1555  2.04  
CISPEP   1 ARG A   92    PRO A   93          0        -5.66                     
CRYST1   45.565   47.473   56.396  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.021947  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.021065  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.017732        0.00000