HEADER TRANSCRIPTION 29-DEC-09 3L7P TITLE CRYSTAL STRUCTURE OF SMU.1657C, PUTATIVE NITROGEN REGULATORY PROTEIN TITLE 2 PII FROM STREPTOCOCCUS MUTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NITROGEN REGULATORY PROTEIN PII; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 1309; SOURCE 4 GENE: SMU_1657C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NITROGEN REGULATORY PROTEIN PII, STREPTOCOCCUS MUTANS, SMU_1657C, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR X.-X.FAN,K.-T.WANG,X.-D.SU REVDAT 2 20-MAR-24 3L7P 1 SEQADV REVDAT 1 29-DEC-10 3L7P 0 JRNL AUTH X.-X.FAN,K.-T.WANG,X.-D.SU JRNL TITL CRYSTAL STRUCTURE OF SMU.1657C, PUTATIVE NITROGEN REGULATORY JRNL TITL 2 PROTEIN PII FROM STREPTOCOCCUS MUTANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.327 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2500 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.111 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3962 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5307 ; 2.073 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 7.308 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;41.463 ;26.063 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 808 ;20.782 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 681 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2663 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2585 ; 1.157 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4178 ; 1.977 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1377 ; 3.441 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1129 ; 5.762 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.51 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.1 MES PH6.5, 0.83M REMARK 280 NANO3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.69650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.84825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.54475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASN A 39 REMARK 465 GLN A 40 REMARK 465 ARG A 41 REMARK 465 GLY A 42 REMARK 465 TYR A 43 REMARK 465 THR A 44 REMARK 465 GLU A 45 REMARK 465 TYR A 46 REMARK 465 VAL A 47 REMARK 465 ARG A 48 REMARK 465 GLY A 49 REMARK 465 GLN A 50 REMARK 465 LYS A 51 REMARK 465 ILE A 52 REMARK 465 THR A 53 REMARK 465 PRO A 54 REMARK 465 GLU A 86 REMARK 465 VAL A 87 REMARK 465 GLY A 88 REMARK 465 ASP A 89 REMARK 465 ARG A 104 REMARK 465 THR A 105 REMARK 465 GLY A 106 REMARK 465 GLU A 107 REMARK 465 ARG A 108 REMARK 465 ASP A 109 REMARK 465 GLY A 110 REMARK 465 ASP A 111 REMARK 465 ALA A 112 REMARK 465 ILE A 113 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ASN B 39 REMARK 465 GLN B 40 REMARK 465 ARG B 41 REMARK 465 GLY B 42 REMARK 465 TYR B 43 REMARK 465 THR B 44 REMARK 465 GLU B 45 REMARK 465 TYR B 46 REMARK 465 VAL B 47 REMARK 465 ARG B 48 REMARK 465 GLY B 49 REMARK 465 GLN B 50 REMARK 465 LYS B 51 REMARK 465 ILE B 52 REMARK 465 THR B 53 REMARK 465 PRO B 54 REMARK 465 THR B 105 REMARK 465 GLY B 106 REMARK 465 GLU B 107 REMARK 465 ARG B 108 REMARK 465 ASP B 109 REMARK 465 GLY B 110 REMARK 465 ASP B 111 REMARK 465 ALA B 112 REMARK 465 ILE B 113 REMARK 465 GLY C -1 REMARK 465 GLN C 40 REMARK 465 ARG C 41 REMARK 465 GLY C 42 REMARK 465 TYR C 43 REMARK 465 THR C 44 REMARK 465 GLU C 45 REMARK 465 TYR C 46 REMARK 465 VAL C 47 REMARK 465 ARG C 48 REMARK 465 GLY C 49 REMARK 465 GLN C 50 REMARK 465 LYS C 51 REMARK 465 ILE C 52 REMARK 465 VAL C 87 REMARK 465 THR C 105 REMARK 465 GLY C 106 REMARK 465 GLU C 107 REMARK 465 ARG C 108 REMARK 465 ASP C 109 REMARK 465 GLY C 110 REMARK 465 ASP C 111 REMARK 465 ALA C 112 REMARK 465 ILE C 113 REMARK 465 ARG D 41 REMARK 465 GLY D 42 REMARK 465 TYR D 43 REMARK 465 THR D 44 REMARK 465 GLU D 45 REMARK 465 TYR D 46 REMARK 465 VAL D 47 REMARK 465 ARG D 48 REMARK 465 GLY D 49 REMARK 465 GLN D 50 REMARK 465 LYS D 51 REMARK 465 ILE D 52 REMARK 465 THR D 53 REMARK 465 VAL D 87 REMARK 465 GLY D 88 REMARK 465 ARG D 104 REMARK 465 THR D 105 REMARK 465 GLY D 106 REMARK 465 GLU D 107 REMARK 465 ARG D 108 REMARK 465 ASP D 109 REMARK 465 GLY D 110 REMARK 465 ASP D 111 REMARK 465 ALA D 112 REMARK 465 ILE D 113 REMARK 465 GLY E -1 REMARK 465 GLN E 40 REMARK 465 ARG E 41 REMARK 465 GLY E 42 REMARK 465 TYR E 43 REMARK 465 THR E 44 REMARK 465 GLU E 45 REMARK 465 TYR E 46 REMARK 465 VAL E 47 REMARK 465 ARG E 48 REMARK 465 GLY E 49 REMARK 465 GLN E 50 REMARK 465 LYS E 51 REMARK 465 ILE E 52 REMARK 465 THR E 53 REMARK 465 THR E 84 REMARK 465 GLY E 85 REMARK 465 GLU E 86 REMARK 465 VAL E 87 REMARK 465 GLY E 88 REMARK 465 ARG E 104 REMARK 465 THR E 105 REMARK 465 GLY E 106 REMARK 465 GLU E 107 REMARK 465 ARG E 108 REMARK 465 ASP E 109 REMARK 465 GLY E 110 REMARK 465 ASP E 111 REMARK 465 ALA E 112 REMARK 465 ILE E 113 REMARK 465 GLY F -1 REMARK 465 ASN F 39 REMARK 465 GLN F 40 REMARK 465 ARG F 41 REMARK 465 GLY F 42 REMARK 465 TYR F 43 REMARK 465 THR F 44 REMARK 465 GLU F 45 REMARK 465 TYR F 46 REMARK 465 VAL F 47 REMARK 465 ARG F 48 REMARK 465 GLY F 49 REMARK 465 GLN F 50 REMARK 465 LYS F 51 REMARK 465 ILE F 52 REMARK 465 THR F 53 REMARK 465 PRO F 54 REMARK 465 ARG F 104 REMARK 465 THR F 105 REMARK 465 GLY F 106 REMARK 465 GLU F 107 REMARK 465 ARG F 108 REMARK 465 ASP F 109 REMARK 465 GLY F 110 REMARK 465 ASP F 111 REMARK 465 ALA F 112 REMARK 465 ILE F 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 89 CG OD1 OD2 REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 83 CG CD CE NZ REMARK 470 ASP E 89 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 11 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 98 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU D 35 CB - CG - CD1 ANGL. DEV. = -11.8 DEGREES REMARK 500 ASP F 11 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 84 -2.26 -140.98 REMARK 500 LYS B 83 114.86 -38.95 REMARK 500 THR B 84 178.64 -48.87 REMARK 500 GLU B 86 -87.92 -118.16 REMARK 500 ILE C 26 -37.35 -33.95 REMARK 500 THR C 84 -46.93 -136.12 REMARK 500 THR D 84 -46.12 -137.63 REMARK 500 THR F 84 -7.08 -142.24 REMARK 500 GLU F 86 76.68 47.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY F 85 GLU F 86 147.20 REMARK 500 GLU F 86 VAL F 87 149.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 3L7P A 1 113 UNP Q8DSV2 Q8DSV2_STRMU 1 113 DBREF 3L7P B 1 113 UNP Q8DSV2 Q8DSV2_STRMU 1 113 DBREF 3L7P C 1 113 UNP Q8DSV2 Q8DSV2_STRMU 1 113 DBREF 3L7P D 1 113 UNP Q8DSV2 Q8DSV2_STRMU 1 113 DBREF 3L7P E 1 113 UNP Q8DSV2 Q8DSV2_STRMU 1 113 DBREF 3L7P F 1 113 UNP Q8DSV2 Q8DSV2_STRMU 1 113 SEQADV 3L7P GLY A -1 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P SER A 0 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P GLY B -1 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P SER B 0 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P GLY C -1 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P SER C 0 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P GLY D -1 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P SER D 0 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P GLY E -1 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P SER E 0 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P GLY F -1 UNP Q8DSV2 EXPRESSION TAG SEQADV 3L7P SER F 0 UNP Q8DSV2 EXPRESSION TAG SEQRES 1 A 115 GLY SER MET LYS LYS ILE GLU ALA ILE ILE ARG SER ASP SEQRES 2 A 115 LYS LEU GLU ASP LEU LYS ALA ALA LEU VAL GLN SER GLY SEQRES 3 A 115 PHE ILE LYS GLY MET THR ILE SER GLN VAL LEU GLY PHE SEQRES 4 A 115 GLY ASN GLN ARG GLY TYR THR GLU TYR VAL ARG GLY GLN SEQRES 5 A 115 LYS ILE THR PRO THR LEU LEU ALA LYS VAL LYS VAL GLU SEQRES 6 A 115 ILE VAL ALA HIS ASP ALA ALA VAL GLU GLU MET ILE THR SEQRES 7 A 115 THR ILE SER GLN ALA VAL LYS THR GLY GLU VAL GLY ASP SEQRES 8 A 115 GLY LYS ILE PHE VAL SER PRO VAL ASP GLU ILE VAL ARG SEQRES 9 A 115 ILE ARG THR GLY GLU ARG ASP GLY ASP ALA ILE SEQRES 1 B 115 GLY SER MET LYS LYS ILE GLU ALA ILE ILE ARG SER ASP SEQRES 2 B 115 LYS LEU GLU ASP LEU LYS ALA ALA LEU VAL GLN SER GLY SEQRES 3 B 115 PHE ILE LYS GLY MET THR ILE SER GLN VAL LEU GLY PHE SEQRES 4 B 115 GLY ASN GLN ARG GLY TYR THR GLU TYR VAL ARG GLY GLN SEQRES 5 B 115 LYS ILE THR PRO THR LEU LEU ALA LYS VAL LYS VAL GLU SEQRES 6 B 115 ILE VAL ALA HIS ASP ALA ALA VAL GLU GLU MET ILE THR SEQRES 7 B 115 THR ILE SER GLN ALA VAL LYS THR GLY GLU VAL GLY ASP SEQRES 8 B 115 GLY LYS ILE PHE VAL SER PRO VAL ASP GLU ILE VAL ARG SEQRES 9 B 115 ILE ARG THR GLY GLU ARG ASP GLY ASP ALA ILE SEQRES 1 C 115 GLY SER MET LYS LYS ILE GLU ALA ILE ILE ARG SER ASP SEQRES 2 C 115 LYS LEU GLU ASP LEU LYS ALA ALA LEU VAL GLN SER GLY SEQRES 3 C 115 PHE ILE LYS GLY MET THR ILE SER GLN VAL LEU GLY PHE SEQRES 4 C 115 GLY ASN GLN ARG GLY TYR THR GLU TYR VAL ARG GLY GLN SEQRES 5 C 115 LYS ILE THR PRO THR LEU LEU ALA LYS VAL LYS VAL GLU SEQRES 6 C 115 ILE VAL ALA HIS ASP ALA ALA VAL GLU GLU MET ILE THR SEQRES 7 C 115 THR ILE SER GLN ALA VAL LYS THR GLY GLU VAL GLY ASP SEQRES 8 C 115 GLY LYS ILE PHE VAL SER PRO VAL ASP GLU ILE VAL ARG SEQRES 9 C 115 ILE ARG THR GLY GLU ARG ASP GLY ASP ALA ILE SEQRES 1 D 115 GLY SER MET LYS LYS ILE GLU ALA ILE ILE ARG SER ASP SEQRES 2 D 115 LYS LEU GLU ASP LEU LYS ALA ALA LEU VAL GLN SER GLY SEQRES 3 D 115 PHE ILE LYS GLY MET THR ILE SER GLN VAL LEU GLY PHE SEQRES 4 D 115 GLY ASN GLN ARG GLY TYR THR GLU TYR VAL ARG GLY GLN SEQRES 5 D 115 LYS ILE THR PRO THR LEU LEU ALA LYS VAL LYS VAL GLU SEQRES 6 D 115 ILE VAL ALA HIS ASP ALA ALA VAL GLU GLU MET ILE THR SEQRES 7 D 115 THR ILE SER GLN ALA VAL LYS THR GLY GLU VAL GLY ASP SEQRES 8 D 115 GLY LYS ILE PHE VAL SER PRO VAL ASP GLU ILE VAL ARG SEQRES 9 D 115 ILE ARG THR GLY GLU ARG ASP GLY ASP ALA ILE SEQRES 1 E 115 GLY SER MET LYS LYS ILE GLU ALA ILE ILE ARG SER ASP SEQRES 2 E 115 LYS LEU GLU ASP LEU LYS ALA ALA LEU VAL GLN SER GLY SEQRES 3 E 115 PHE ILE LYS GLY MET THR ILE SER GLN VAL LEU GLY PHE SEQRES 4 E 115 GLY ASN GLN ARG GLY TYR THR GLU TYR VAL ARG GLY GLN SEQRES 5 E 115 LYS ILE THR PRO THR LEU LEU ALA LYS VAL LYS VAL GLU SEQRES 6 E 115 ILE VAL ALA HIS ASP ALA ALA VAL GLU GLU MET ILE THR SEQRES 7 E 115 THR ILE SER GLN ALA VAL LYS THR GLY GLU VAL GLY ASP SEQRES 8 E 115 GLY LYS ILE PHE VAL SER PRO VAL ASP GLU ILE VAL ARG SEQRES 9 E 115 ILE ARG THR GLY GLU ARG ASP GLY ASP ALA ILE SEQRES 1 F 115 GLY SER MET LYS LYS ILE GLU ALA ILE ILE ARG SER ASP SEQRES 2 F 115 LYS LEU GLU ASP LEU LYS ALA ALA LEU VAL GLN SER GLY SEQRES 3 F 115 PHE ILE LYS GLY MET THR ILE SER GLN VAL LEU GLY PHE SEQRES 4 F 115 GLY ASN GLN ARG GLY TYR THR GLU TYR VAL ARG GLY GLN SEQRES 5 F 115 LYS ILE THR PRO THR LEU LEU ALA LYS VAL LYS VAL GLU SEQRES 6 F 115 ILE VAL ALA HIS ASP ALA ALA VAL GLU GLU MET ILE THR SEQRES 7 F 115 THR ILE SER GLN ALA VAL LYS THR GLY GLU VAL GLY ASP SEQRES 8 F 115 GLY LYS ILE PHE VAL SER PRO VAL ASP GLU ILE VAL ARG SEQRES 9 F 115 ILE ARG THR GLY GLU ARG ASP GLY ASP ALA ILE FORMUL 7 HOH *161(H2 O) HELIX 1 1 LYS A 12 SER A 23 1 12 HELIX 2 2 PHE A 25 LYS A 27 5 3 HELIX 3 3 HIS A 67 ALA A 69 5 3 HELIX 4 4 ALA A 70 LYS A 83 1 14 HELIX 5 5 LYS B 12 SER B 23 1 12 HELIX 6 6 PHE B 25 LYS B 27 5 3 HELIX 7 7 HIS B 67 ALA B 69 5 3 HELIX 8 8 ALA B 70 LYS B 83 1 14 HELIX 9 9 LYS C 12 GLY C 24 1 13 HELIX 10 10 PHE C 25 LYS C 27 5 3 HELIX 11 11 ALA C 70 LYS C 83 1 14 HELIX 12 12 LYS D 12 SER D 23 1 12 HELIX 13 13 PHE D 25 LYS D 27 5 3 HELIX 14 14 ALA D 70 LYS D 83 1 14 HELIX 15 15 LYS E 12 SER E 23 1 12 HELIX 16 16 PHE E 25 LYS E 27 5 3 HELIX 17 17 ALA E 70 LYS E 83 1 14 HELIX 18 18 LYS F 12 SER F 23 1 12 HELIX 19 19 PHE F 25 MET F 29 5 5 HELIX 20 20 ALA F 70 LYS F 83 1 14 SHEET 1 A 5 MET A 29 GLY A 36 0 SHEET 2 A 5 LEU A 57 ALA A 66 -1 O LYS A 59 N VAL A 34 SHEET 3 A 5 LYS A 2 ARG A 9 -1 N LYS A 2 O ALA A 66 SHEET 4 A 5 LYS A 91 PRO A 96 -1 O PHE A 93 N GLU A 5 SHEET 5 A 5 GLU C 99 ARG C 102 -1 O GLU C 99 N VAL A 94 SHEET 1 B10 GLU A 99 ARG A 102 0 SHEET 2 B10 GLY D 90 VAL D 97 -1 O ILE D 92 N VAL A 101 SHEET 3 B10 MET D 1 ARG D 9 -1 N GLU D 5 O PHE D 93 SHEET 4 B10 THR D 55 HIS D 67 -1 O ILE D 64 N ILE D 4 SHEET 5 B10 MET D 29 GLY D 38 -1 N GLY D 36 O LEU D 57 SHEET 6 B10 MET C 29 GLY C 38 -1 N LEU C 35 O ILE D 31 SHEET 7 B10 THR C 55 HIS C 67 -1 O LEU C 57 N GLY C 36 SHEET 8 B10 MET C 1 ARG C 9 -1 N ILE C 4 O ILE C 64 SHEET 9 B10 GLY C 90 VAL C 97 -1 O PHE C 93 N GLU C 5 SHEET 10 B10 GLU D 99 ARG D 102 -1 O VAL D 101 N ILE C 92 SHEET 1 C10 GLU B 99 ARG B 102 0 SHEET 2 C10 GLY F 90 VAL F 97 -1 O ILE F 92 N VAL B 101 SHEET 3 C10 MET F 1 ARG F 9 -1 N LYS F 3 O SER F 95 SHEET 4 C10 LEU F 57 HIS F 67 -1 O ALA F 66 N LYS F 2 SHEET 5 C10 THR F 30 GLY F 36 -1 N SER F 32 O LYS F 61 SHEET 6 C10 MET B 29 GLY B 36 -1 N ILE B 31 O LEU F 35 SHEET 7 C10 LEU B 57 ALA B 66 -1 O LYS B 61 N SER B 32 SHEET 8 C10 LYS B 2 ARG B 9 -1 N ILE B 4 O ILE B 64 SHEET 9 C10 LYS B 91 PRO B 96 -1 O SER B 95 N LYS B 3 SHEET 10 C10 GLU E 99 ARG E 102 -1 O GLU E 99 N VAL B 94 SHEET 1 D 5 MET E 29 GLY E 38 0 SHEET 2 D 5 THR E 55 HIS E 67 -1 O LYS E 61 N SER E 32 SHEET 3 D 5 MET E 1 ARG E 9 -1 N ILE E 4 O ILE E 64 SHEET 4 D 5 GLY E 90 VAL E 97 -1 O PHE E 93 N GLU E 5 SHEET 5 D 5 GLU F 99 ARG F 102 -1 O VAL F 101 N ILE E 92 CISPEP 1 THR C 84 GLY C 85 0 -24.57 CISPEP 2 GLY C 88 ASP C 89 0 -0.21 CISPEP 3 GLY D 85 GLU D 86 0 -28.53 CRYST1 60.805 60.805 147.393 90.00 90.00 90.00 P 41 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016446 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006785 0.00000