data_3L8L # _entry.id 3L8L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3L8L pdb_00003l8l 10.2210/pdb3l8l/pdb RCSB RCSB056969 ? ? WWPDB D_1000056969 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1TK2 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN S COMPLEXED WITH ALKALINE PROTEINASE SAVINASE' PDB 2XDC unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A FROM CRYSTALS GROWN IN A LIPID CUBIC PHASE.' PDB 1AV2 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE' PDB 1BDW unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A FROM BACILLUS BREVIS' PDB 1C4D unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE' PDB 1GMK unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLRXED WITH POTASSIUM THIOCYANATE' PDB 1GRM unspecified 'SOLUTION STRUCTURE OF THE GRAMICIDIN A' PDB 1JNO unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES' PDB 1KQE unspecified 'SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A IN BENZENE/ACETONE 10:1' PDB 1MAG unspecified 'SOLID STATE NMR STRUCTURE OF GRAMICIDIN A IN HYDRATED DMPC BILAYERS,' PDB 1MIC unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN METHANOL IN THE PRESENCE OF CACL' PDB 1NG8 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A (W15G) IN SODIUM DODECYL SULFATE MICELLES' PDB 1NRM unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES' PDB 1NRU unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES IN THE PRESENCE OF EXCESS NA+' PDB 1NT5 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A (V1F) IN SODIUM DODECYL SULFATE MICELLES' PDB 1JO3 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN B IN SODIUM DODECYL SULFATE MICELLES' PDB 1JO4 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES' PDB 1NT6 unspecified 'SOLUTION STRUCTURE OF F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES' PDB 1TKQ unspecified 'SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN A IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE, IN THE PRESENCE OF CSCL' PDB 1W5U unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL' PDB 2IZQ unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH KI IN METHANOL' PDB 1AL4 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN N-PROPANOL' PDB 1ALX unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN METHANOL' PDB 1ALZ unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3L8L _pdbx_database_status.recvd_initial_deposition_date 2009-12-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Olczak, A.' 1 'Glowka, M.L.' 2 'Szczesio, M.' 3 'Bojarska, J.' 4 'Wawrzak, Z.' 5 'Duax, W.L.' 6 # _citation.id primary _citation.title ;The first crystal structure of a gramicidin complex with sodium: high-resolution study of a nonstoichiometric gramicidin D-NaI complex. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 66 _citation.page_first 874 _citation.page_last 880 _citation.year 2010 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20693686 _citation.pdbx_database_id_DOI 10.1107/S0907444910019876 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Olczak, A.' 1 ? primary 'Glowka, M.L.' 2 ? primary 'Szczesio, M.' 3 ? primary 'Bojarska, J.' 4 ? primary 'Wawrzak, Z.' 5 ? primary 'Duax, W.L.' 6 ? # _cell.entry_id 3L8L _cell.length_a 29.816 _cell.length_b 31.255 _cell.length_c 51.667 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3L8L _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'GRAMICIDIN D' 1882.294 2 ? ? ? ? 2 polymer nat 'GRAMICIDIN D' 1843.258 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 4 non-polymer syn 'IODIDE ION' 126.904 7 ? ? ? ? 5 non-polymer syn METHANOL 32.042 3 ? ? ? ? 6 water nat water 18.015 42 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'VAL-GRAMICIDIN A' 2 'VAL-GRAMICIDIN A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)W(DLE)W(DLE)W(ETA)' VGALAVVVWLWLWLWX A,C ? 2 'polypeptide(L)' no yes '(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)F(DLE)W(DLE)W(ETA)' VGALAVVVWLFLWLWX B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 FVA n 1 2 GLY n 1 3 ALA n 1 4 DLE n 1 5 ALA n 1 6 DVA n 1 7 VAL n 1 8 DVA n 1 9 TRP n 1 10 DLE n 1 11 TRP n 1 12 DLE n 1 13 TRP n 1 14 DLE n 1 15 TRP n 1 16 ETA n 2 1 FVA n 2 2 GLY n 2 3 ALA n 2 4 DLE n 2 5 ALA n 2 6 DVA n 2 7 VAL n 2 8 DVA n 2 9 TRP n 2 10 DLE n 2 11 PHE y 2 11 TRP y 2 12 DLE n 2 13 TRP n 2 14 DLE n 2 15 TRP n 2 16 ETA n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'BACILLUS BREVIS' 1393 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'BACILLUS BREVIS' 1393 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 NOR NOR00243 1 ? ? NOR00243 ? 2 NOR NOR00243 2 ? ? NOR00243 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3L8L A 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 2 2 3L8L B 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 3 1 3L8L C 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 4 2 3L8L D 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 3L8L PHE B 11 ? NOR NOR00243 TRP 11 microheterogeneity 11 1 4 3L8L PHE D 11 ? NOR NOR00243 TRP 11 microheterogeneity 11 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 ETA 'L-peptide COOH carboxy terminus' . ETHANOLAMINE ? 'C2 H7 N O' 61.083 FVA 'L-peptide linking' n N-formyl-L-valine ? 'C6 H11 N O3' 145.156 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 MOH non-polymer . METHANOL ? 'C H4 O' 32.042 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3L8L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.61 _exptl_crystal.density_percent_sol 23.72 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'BATCH CRYSTALLIZATION WITH 30 MG/ML GRAMICIDIN AND SATURATED NAI IN METHANOL' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2000 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength 0.918 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3L8L _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 26.740 _reflns.d_resolution_high 1.250 _reflns.number_obs 19883 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3L8L _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 24628 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.74 _refine.ls_d_res_high 1.25 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.164 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 5345 _refine.ls_number_restraints 6738 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1W5U' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3L8L _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 26 _refine_analyze.occupancy_sum_hydrogen 556.13 _refine_analyze.occupancy_sum_non_hydrogen 566.51 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 566 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 625 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 26.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.035 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.033 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.146 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.126 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.041 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3L8L _pdbx_refine.R_factor_all_no_cutoff 0.164 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.153 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 19883 # _struct.entry_id 3L8L _struct.title 'Gramicidin D complex with sodium iodide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L8L _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'GRAMICIDIN, ANTIFUNGAL, ANTIBACTERIAL, ANTIBIOTIC, MEMBRANE ION CHANNEL, LINEAR GRAMICIDIN, GRAMICIDIN-NAI COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 3 ? K N N 4 ? L N N 5 ? M N N 5 ? N N N 3 ? O N N 4 ? P N N 3 ? Q N N 4 ? R N N 4 ? S N N 6 ? T N N 6 ? U N N 6 ? V N N 6 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A FVA 1 C ? ? ? 1_555 A GLY 2 N ? ? A FVA 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A ALA 3 C ? ? ? 1_555 A DLE 4 N ? ? A ALA 3 A DLE 4 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale3 covale both ? A DLE 4 C ? ? ? 1_555 A ALA 5 N ? ? A DLE 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale4 covale both ? A ALA 5 C ? ? ? 1_555 A DVA 6 N ? ? A ALA 5 A DVA 6 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? A DVA 6 C ? ? ? 1_555 A VAL 7 N ? ? A DVA 6 A VAL 7 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale6 covale both ? A VAL 7 C ? ? ? 1_555 A DVA 8 N ? ? A VAL 7 A DVA 8 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale7 covale both ? A DVA 8 C ? ? ? 1_555 A TRP 9 N ? ? A DVA 8 A TRP 9 1_555 ? ? ? ? ? ? ? 1.283 ? ? covale8 covale both ? A TRP 9 C ? ? ? 1_555 A DLE 10 N ? ? A TRP 9 A DLE 10 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale9 covale both ? A DLE 10 C ? ? ? 1_555 A TRP 11 N ? ? A DLE 10 A TRP 11 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale10 covale both ? A TRP 11 C ? ? ? 1_555 A DLE 12 N ? ? A TRP 11 A DLE 12 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale11 covale both ? A DLE 12 C ? ? ? 1_555 A TRP 13 N ? ? A DLE 12 A TRP 13 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale12 covale both ? A TRP 13 C ? ? ? 1_555 A DLE 14 N ? ? A TRP 13 A DLE 14 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale13 covale both ? A DLE 14 C ? ? ? 1_555 A TRP 15 N ? ? A DLE 14 A TRP 15 1_555 ? ? ? ? ? ? ? 1.293 ? ? covale14 covale both ? A TRP 15 C ? ? ? 1_555 A ETA 16 N ? ? A TRP 15 A ETA 16 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale15 covale both ? B FVA 1 C ? ? ? 1_555 B GLY 2 N ? ? B FVA 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.287 ? ? covale16 covale both ? B ALA 3 C ? ? ? 1_555 B DLE 4 N ? ? B ALA 3 B DLE 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale17 covale both ? B DLE 4 C ? ? ? 1_555 B ALA 5 N ? ? B DLE 4 B ALA 5 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale18 covale both ? B ALA 5 C ? ? ? 1_555 B DVA 6 N ? ? B ALA 5 B DVA 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale19 covale both ? B DVA 6 C ? ? ? 1_555 B VAL 7 N ? ? B DVA 6 B VAL 7 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale20 covale both ? B VAL 7 C ? ? ? 1_555 B DVA 8 N ? ? B VAL 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.294 ? ? covale21 covale both ? B DVA 8 C ? ? ? 1_555 B TRP 9 N ? ? B DVA 8 B TRP 9 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale22 covale both ? B TRP 9 C ? ? ? 1_555 B DLE 10 N ? ? B TRP 9 B DLE 10 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale23 covale both ? B DLE 10 C ? ? ? 1_555 B TRP 11 N A ? B DLE 10 B TRP 11 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale24 covale both ? B DLE 10 C ? ? ? 1_555 B PHE 11 N B ? B DLE 10 B PHE 11 1_555 ? ? ? ? ? ? ? 1.275 ? ? covale25 covale both ? B TRP 11 C A ? ? 1_555 B DLE 12 N ? ? B TRP 11 B DLE 12 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale26 covale both ? B PHE 11 C B ? ? 1_555 B DLE 12 N ? ? B PHE 11 B DLE 12 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale27 covale both ? B DLE 12 C ? ? ? 1_555 B TRP 13 N ? ? B DLE 12 B TRP 13 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale28 covale both ? B TRP 13 C ? ? ? 1_555 B DLE 14 N ? ? B TRP 13 B DLE 14 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale29 covale both ? B DLE 14 C ? ? ? 1_555 B TRP 15 N ? ? B DLE 14 B TRP 15 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale30 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N B ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale31 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N A ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale32 covale both ? C FVA 1 C ? ? ? 1_555 C GLY 2 N ? ? C FVA 1 C GLY 2 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale33 covale both ? C ALA 3 C ? ? ? 1_555 C DLE 4 N ? ? C ALA 3 C DLE 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale34 covale both ? C DLE 4 C ? ? ? 1_555 C ALA 5 N ? ? C DLE 4 C ALA 5 1_555 ? ? ? ? ? ? ? 1.287 ? ? covale35 covale both ? C ALA 5 C ? ? ? 1_555 C DVA 6 N ? ? C ALA 5 C DVA 6 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale36 covale both ? C DVA 6 C ? ? ? 1_555 C VAL 7 N ? ? C DVA 6 C VAL 7 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale37 covale both ? C VAL 7 C ? ? ? 1_555 C DVA 8 N ? ? C VAL 7 C DVA 8 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale38 covale both ? C DVA 8 C ? ? ? 1_555 C TRP 9 N ? ? C DVA 8 C TRP 9 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale39 covale both ? C TRP 9 C ? ? ? 1_555 C DLE 10 N ? ? C TRP 9 C DLE 10 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale40 covale both ? C DLE 10 C ? ? ? 1_555 C TRP 11 N ? ? C DLE 10 C TRP 11 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale41 covale both ? C TRP 11 C ? ? ? 1_555 C DLE 12 N ? ? C TRP 11 C DLE 12 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale42 covale both ? C DLE 12 C ? ? ? 1_555 C TRP 13 N ? ? C DLE 12 C TRP 13 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale43 covale both ? C TRP 13 C ? ? ? 1_555 C DLE 14 N ? ? C TRP 13 C DLE 14 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale44 covale both ? C DLE 14 C ? ? ? 1_555 C TRP 15 N ? ? C DLE 14 C TRP 15 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale45 covale both ? C TRP 15 C ? ? ? 1_555 C ETA 16 N B ? C TRP 15 C ETA 16 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale46 covale both ? C TRP 15 C ? ? ? 1_555 C ETA 16 N A ? C TRP 15 C ETA 16 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale47 covale both ? D FVA 1 C ? ? ? 1_555 D GLY 2 N ? ? D FVA 1 D GLY 2 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale48 covale both ? D ALA 3 C ? ? ? 1_555 D DLE 4 N ? ? D ALA 3 D DLE 4 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale49 covale both ? D DLE 4 C ? ? ? 1_555 D ALA 5 N ? ? D DLE 4 D ALA 5 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale50 covale both ? D ALA 5 C ? ? ? 1_555 D DVA 6 N ? ? D ALA 5 D DVA 6 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale51 covale both ? D DVA 6 C ? ? ? 1_555 D VAL 7 N ? ? D DVA 6 D VAL 7 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale52 covale both ? D VAL 7 C ? ? ? 1_555 D DVA 8 N ? ? D VAL 7 D DVA 8 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale53 covale both ? D DVA 8 C ? ? ? 1_555 D TRP 9 N ? ? D DVA 8 D TRP 9 1_555 ? ? ? ? ? ? ? 1.302 ? ? covale54 covale both ? D TRP 9 C ? ? ? 1_555 D DLE 10 N ? ? D TRP 9 D DLE 10 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale55 covale both ? D DLE 10 C ? ? ? 1_555 D TRP 11 N A ? D DLE 10 D TRP 11 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale56 covale both ? D DLE 10 C ? ? ? 1_555 D PHE 11 N B ? D DLE 10 D PHE 11 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale57 covale both ? D TRP 11 C A ? ? 1_555 D DLE 12 N ? ? D TRP 11 D DLE 12 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale58 covale both ? D PHE 11 C B ? ? 1_555 D DLE 12 N ? ? D PHE 11 D DLE 12 1_555 ? ? ? ? ? ? ? 1.278 ? ? covale59 covale both ? D DLE 12 C ? ? ? 1_555 D TRP 13 N ? ? D DLE 12 D TRP 13 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale60 covale both ? D TRP 13 C ? ? ? 1_555 D DLE 14 N ? ? D TRP 13 D DLE 14 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale61 covale both ? D DLE 14 C ? ? ? 1_555 D TRP 15 N ? ? D DLE 14 D TRP 15 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale62 covale both ? D TRP 15 C ? ? ? 1_555 D ETA 16 N ? ? D TRP 15 D ETA 16 1_555 ? ? ? ? ? ? ? 1.306 ? ? metalc1 metalc ? ? A DVA 8 O ? ? ? 1_555 E NA . NA ? ? A DVA 8 A NA 1001 1_555 ? ? ? ? ? ? ? 2.588 ? ? metalc2 metalc ? ? A DVA 8 O ? ? ? 1_555 J NA . NA ? ? A DVA 8 B NA 1000 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc3 metalc ? ? A DLE 10 O ? ? ? 1_555 E NA . NA ? ? A DLE 10 A NA 1001 1_555 ? ? ? ? ? ? ? 3.171 ? ? metalc4 metalc ? ? E NA . NA ? ? ? 1_555 B DVA 6 O ? ? A NA 1001 B DVA 6 1_555 ? ? ? ? ? ? ? 2.527 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 T HOH . O ? ? A NA 1001 B HOH 2005 1_555 ? ? ? ? ? ? ? 2.825 ? ? metalc6 metalc ? ? E NA . NA ? ? ? 1_555 T HOH . O ? ? A NA 1001 B HOH 2006 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc7 metalc ? ? E NA . NA ? ? ? 1_555 T HOH . O ? ? A NA 1001 B HOH 2009 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc8 metalc ? ? E NA . NA ? ? ? 1_555 T HOH . O ? ? A NA 1001 B HOH 2010 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc9 metalc ? ? B DVA 6 O ? ? ? 1_555 J NA . NA ? ? B DVA 6 B NA 1000 1_555 ? ? ? ? ? ? ? 2.703 ? ? metalc10 metalc ? ? J NA . NA ? ? ? 1_555 T HOH . O ? ? B NA 1000 B HOH 2005 1_555 ? ? ? ? ? ? ? 2.875 ? ? metalc11 metalc ? ? J NA . NA ? ? ? 1_555 T HOH . O ? ? B NA 1000 B HOH 2006 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc12 metalc ? ? J NA . NA ? ? ? 1_555 T HOH . O ? ? B NA 1000 B HOH 2009 1_555 ? ? ? ? ? ? ? 2.464 ? ? metalc13 metalc ? ? J NA . NA ? ? ? 1_555 T HOH . O ? ? B NA 1000 B HOH 2010 1_555 ? ? ? ? ? ? ? 2.793 ? ? metalc14 metalc ? ? C DVA 8 O ? ? ? 1_555 N NA . NA ? ? C DVA 8 C NA 1011 1_555 ? ? ? ? ? ? ? 2.658 ? ? metalc15 metalc ? ? C DLE 10 O ? ? ? 1_555 N NA . NA ? ? C DLE 10 C NA 1011 1_555 ? ? ? ? ? ? ? 3.004 ? ? metalc16 metalc ? ? C DLE 10 O ? ? ? 1_555 P NA . NA ? ? C DLE 10 D NA 1010 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc17 metalc ? ? N NA . NA ? ? ? 1_555 U HOH . O ? ? C NA 1011 C HOH 2005 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc18 metalc ? ? N NA . NA ? ? ? 1_555 U HOH . O ? ? C NA 1011 C HOH 2007 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc19 metalc ? ? N NA . NA ? ? ? 1_555 D DVA 6 O ? ? C NA 1011 D DVA 6 1_555 ? ? ? ? ? ? ? 2.418 ? ? metalc20 metalc ? ? N NA . NA ? ? ? 1_555 V HOH . O ? ? C NA 1011 D HOH 2008 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc21 metalc ? ? N NA . NA ? ? ? 1_555 V HOH . O ? ? C NA 1011 D HOH 2009 1_555 ? ? ? ? ? ? ? 2.897 ? ? metalc22 metalc ? ? N NA . NA ? ? ? 1_555 V HOH . O ? ? C NA 1011 D HOH 2011 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc23 metalc ? ? D DLE 4 O ? ? ? 1_555 P NA . NA ? ? D DLE 4 D NA 1010 1_555 ? ? ? ? ? ? ? 2.698 ? ? metalc24 metalc ? ? P NA . NA ? ? ? 1_555 V HOH . O ? ? D NA 1010 D HOH 2003 1_555 ? ? ? ? ? ? ? 2.835 ? ? metalc25 metalc ? ? P NA . NA ? ? ? 1_555 V HOH . O ? ? D NA 1010 D HOH 2007 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc26 metalc ? ? P NA . NA ? ? ? 1_555 V HOH . O ? ? D NA 1010 D HOH 2008 1_555 ? ? ? ? ? ? ? 2.269 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? CA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel CA 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 2 ? TRP A 15 ? GLY A 2 TRP A 15 AA 2 GLY B 2 ? TRP B 15 ? GLY B 2 TRP B 15 CA 1 GLY C 2 ? TRP C 15 ? GLY C 2 TRP C 15 CA 2 GLY D 2 ? TRP D 15 ? GLY D 2 TRP D 15 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N DLE A 14 ? N DLE A 14 O GLY B 2 ? O GLY B 2 CA 1 2 N DLE C 14 ? N DLE C 14 O GLY D 2 ? O GLY D 2 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 1001 ? 10 'BINDING SITE FOR RESIDUE NA A 1001' AC2 Software A IOD 1020 ? 3 'BINDING SITE FOR RESIDUE IOD A 1020' AC3 Software A IOD 1021 ? 3 'BINDING SITE FOR RESIDUE IOD A 1021' AC4 Software A IOD 1025 ? 7 'BINDING SITE FOR RESIDUE IOD A 1025' AC5 Software B NA 1000 ? 9 'BINDING SITE FOR RESIDUE NA B 1000' AC6 Software B IOD 1026 ? 3 'BINDING SITE FOR RESIDUE IOD B 1026' AC7 Software C NA 1011 ? 12 'BINDING SITE FOR RESIDUE NA C 1011' AC8 Software C IOD 1024 ? 1 'BINDING SITE FOR RESIDUE IOD C 1024' AC9 Software D NA 1010 ? 11 'BINDING SITE FOR RESIDUE NA D 1010' BC1 Software D IOD 1022 ? 4 'BINDING SITE FOR RESIDUE IOD D 1022' BC2 Software D IOD 1023 ? 3 'BINDING SITE FOR RESIDUE IOD D 1023' BC3 Software ? ? ? ? 42 'BINDING SITE FOR CHAIN A OF GRAMICIDIN D' BC4 Software ? ? ? ? 53 'BINDING SITE FOR CHAIN B OF GRAMICIDIN D' BC5 Software ? ? ? ? 46 'BINDING SITE FOR CHAIN C OF GRAMICIDIN D' BC6 Software ? ? ? ? 50 'BINDING SITE FOR CHAIN D OF GRAMICIDIN D' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DVA A 8 ? DVA A 8 . ? 1_555 ? 2 AC1 10 TRP A 9 ? TRP A 9 . ? 1_555 ? 3 AC1 10 DLE A 10 ? DLE A 10 . ? 1_555 ? 4 AC1 10 DVA B 6 ? DVA B 6 . ? 1_555 ? 5 AC1 10 VAL B 7 ? VAL B 7 . ? 1_555 ? 6 AC1 10 DVA B 8 ? DVA B 8 . ? 1_555 ? 7 AC1 10 HOH T . ? HOH B 2005 . ? 1_555 ? 8 AC1 10 HOH T . ? HOH B 2006 . ? 1_555 ? 9 AC1 10 HOH T . ? HOH B 2009 . ? 1_555 ? 10 AC1 10 HOH T . ? HOH B 2010 . ? 1_555 ? 11 AC2 3 DLE B 4 ? DLE B 4 . ? 1_555 ? 12 AC2 3 TRP C 11 ? TRP C 11 . ? 1_555 ? 13 AC2 3 HOH U . ? HOH C 2008 . ? 1_555 ? 14 AC3 3 TRP A 15 ? TRP A 15 . ? 1_555 ? 15 AC3 3 IOD H . ? IOD A 1025 . ? 1_555 ? 16 AC3 3 HOH U . ? HOH C 2009 . ? 4_556 ? 17 AC4 7 TRP A 13 ? TRP A 13 . ? 4_566 ? 18 AC4 7 TRP A 15 ? TRP A 15 . ? 1_555 ? 19 AC4 7 IOD G . ? IOD A 1021 . ? 1_555 ? 20 AC4 7 HOH S . ? HOH A 2005 . ? 1_555 ? 21 AC4 7 TRP C 15 ? TRP C 15 . ? 4_556 ? 22 AC4 7 HOH U . ? HOH C 2009 . ? 4_556 ? 23 AC4 7 TRP D 9 ? TRP D 9 . ? 1_565 ? 24 AC5 9 DVA A 8 ? DVA A 8 . ? 1_555 ? 25 AC5 9 DLE A 10 ? DLE A 10 . ? 1_555 ? 26 AC5 9 DVA B 6 ? DVA B 6 . ? 1_555 ? 27 AC5 9 VAL B 7 ? VAL B 7 . ? 1_555 ? 28 AC5 9 DVA B 8 ? DVA B 8 . ? 1_555 ? 29 AC5 9 HOH T . ? HOH B 2005 . ? 1_555 ? 30 AC5 9 HOH T . ? HOH B 2006 . ? 1_555 ? 31 AC5 9 HOH T . ? HOH B 2009 . ? 1_555 ? 32 AC5 9 HOH T . ? HOH B 2010 . ? 1_555 ? 33 AC6 3 HOH S . ? HOH A 2004 . ? 1_555 ? 34 AC6 3 TRP B 13 ? TRP B 13 . ? 3_756 ? 35 AC6 3 TRP B 15 ? TRP B 15 . ? 1_555 ? 36 AC7 12 DVA C 8 ? DVA C 8 . ? 1_555 ? 37 AC7 12 TRP C 9 ? TRP C 9 . ? 1_555 ? 38 AC7 12 DLE C 10 ? DLE C 10 . ? 1_555 ? 39 AC7 12 HOH U . ? HOH C 2005 . ? 1_555 ? 40 AC7 12 HOH U . ? HOH C 2007 . ? 1_555 ? 41 AC7 12 DVA D 6 ? DVA D 6 . ? 1_555 ? 42 AC7 12 DVA D 8 ? DVA D 8 . ? 1_555 ? 43 AC7 12 NA P . ? NA D 1010 . ? 1_555 ? 44 AC7 12 HOH V . ? HOH D 2007 . ? 1_555 ? 45 AC7 12 HOH V . ? HOH D 2008 . ? 1_555 ? 46 AC7 12 HOH V . ? HOH D 2009 . ? 1_555 ? 47 AC7 12 HOH V . ? HOH D 2011 . ? 1_555 ? 48 AC8 1 HOH V . ? HOH D 2005 . ? 2_655 ? 49 AC9 11 DLE C 10 ? DLE C 10 . ? 1_555 ? 50 AC9 11 DLE C 12 ? DLE C 12 . ? 1_555 ? 51 AC9 11 NA N . ? NA C 1011 . ? 1_555 ? 52 AC9 11 HOH U . ? HOH C 2007 . ? 1_555 ? 53 AC9 11 DLE D 4 ? DLE D 4 . ? 1_555 ? 54 AC9 11 ALA D 5 ? ALA D 5 . ? 1_555 ? 55 AC9 11 DVA D 6 ? DVA D 6 . ? 1_555 ? 56 AC9 11 HOH V . ? HOH D 2003 . ? 1_555 ? 57 AC9 11 HOH V . ? HOH D 2004 . ? 1_555 ? 58 AC9 11 HOH V . ? HOH D 2007 . ? 1_555 ? 59 AC9 11 HOH V . ? HOH D 2008 . ? 1_555 ? 60 BC1 4 ETA B 16 ? ETA B 16 . ? 3_646 ? 61 BC1 4 TRP D 13 ? TRP D 13 . ? 1_555 ? 62 BC1 4 TRP D 15 ? TRP D 15 . ? 3_656 ? 63 BC1 4 IOD R . ? IOD D 1023 . ? 4_456 ? 64 BC2 3 ETA B 16 ? ETA B 16 . ? 2_664 ? 65 BC2 3 HOH T . ? HOH B 2014 . ? 2_664 ? 66 BC2 3 IOD Q . ? IOD D 1022 . ? 4_556 ? 67 BC3 42 NA E . ? NA A 1001 . ? 1_555 ? 68 BC3 42 IOD G . ? IOD A 1021 . ? 1_555 ? 69 BC3 42 IOD H . ? IOD A 1025 . ? 4_466 ? 70 BC3 42 IOD H . ? IOD A 1025 . ? 1_555 ? 71 BC3 42 HOH S . ? HOH A 2001 . ? 1_555 ? 72 BC3 42 HOH S . ? HOH A 2003 . ? 1_555 ? 73 BC3 42 HOH S . ? HOH A 2004 . ? 1_555 ? 74 BC3 42 GLY B 2 ? GLY B 2 . ? 2_665 ? 75 BC3 42 GLY B 2 ? GLY B 2 . ? 1_555 ? 76 BC3 42 ALA B 3 ? ALA B 3 . ? 2_665 ? 77 BC3 42 ALA B 3 ? ALA B 3 . ? 1_555 ? 78 BC3 42 DLE B 4 ? DLE B 4 . ? 1_555 ? 79 BC3 42 ALA B 5 ? ALA B 5 . ? 1_555 ? 80 BC3 42 DVA B 6 ? DVA B 6 . ? 1_555 ? 81 BC3 42 VAL B 7 ? VAL B 7 . ? 1_555 ? 82 BC3 42 DVA B 8 ? DVA B 8 . ? 1_555 ? 83 BC3 42 TRP B 9 ? TRP B 9 . ? 1_555 ? 84 BC3 42 DLE B 10 ? DLE B 10 . ? 1_555 ? 85 BC3 42 PHE B 11 ? PHE B 11 . ? 1_555 ? 86 BC3 42 DLE B 12 ? DLE B 12 . ? 1_555 ? 87 BC3 42 TRP B 13 ? TRP B 13 . ? 1_555 ? 88 BC3 42 DLE B 14 ? DLE B 14 . ? 1_555 ? 89 BC3 42 TRP B 15 ? TRP B 15 . ? 1_555 ? 90 BC3 42 ETA B 16 ? ETA B 16 . ? 1_555 ? 91 BC3 42 NA J . ? NA B 1000 . ? 1_555 ? 92 BC3 42 HOH T . ? HOH B 2012 . ? 1_555 ? 93 BC3 42 ALA C 3 ? ALA C 3 . ? 1_555 ? 94 BC3 42 DLE C 4 ? DLE C 4 . ? 1_555 ? 95 BC3 42 TRP C 9 ? TRP C 9 . ? 4_556 ? 96 BC3 42 TRP C 11 ? TRP C 11 . ? 1_555 ? 97 BC3 42 DLE C 12 ? DLE C 12 . ? 4_456 ? 98 BC3 42 TRP C 13 ? TRP C 13 . ? 4_456 ? 99 BC3 42 DLE C 14 ? DLE C 14 . ? 1_565 ? 100 BC3 42 TRP C 15 ? TRP C 15 . ? 1_565 ? 101 BC3 42 TRP C 15 ? TRP C 15 . ? 4_556 ? 102 BC3 42 ETA C 16 ? ETA C 16 . ? 4_556 ? 103 BC3 42 VAL D 7 ? VAL D 7 . ? 1_565 ? 104 BC3 42 TRP D 9 ? TRP D 9 . ? 4_456 ? 105 BC3 42 DLE D 10 ? DLE D 10 . ? 3_756 ? 106 BC3 42 PHE D 11 ? PHE D 11 . ? 1_555 ? 107 BC3 42 TRP D 13 ? TRP D 13 . ? 3_656 ? 108 BC3 42 TRP D 15 ? TRP D 15 . ? 1_565 ? 109 BC4 53 GLY A 2 ? GLY A 2 . ? 2_664 ? 110 BC4 53 GLY A 2 ? GLY A 2 . ? 1_555 ? 111 BC4 53 ALA A 3 ? ALA A 3 . ? 1_555 ? 112 BC4 53 ALA A 3 ? ALA A 3 . ? 2_664 ? 113 BC4 53 DLE A 4 ? DLE A 4 . ? 1_555 ? 114 BC4 53 ALA A 5 ? ALA A 5 . ? 1_555 ? 115 BC4 53 DVA A 6 ? DVA A 6 . ? 1_555 ? 116 BC4 53 VAL A 7 ? VAL A 7 . ? 1_555 ? 117 BC4 53 DVA A 8 ? DVA A 8 . ? 1_555 ? 118 BC4 53 TRP A 9 ? TRP A 9 . ? 1_555 ? 119 BC4 53 DLE A 10 ? DLE A 10 . ? 1_555 ? 120 BC4 53 TRP A 11 ? TRP A 11 . ? 1_555 ? 121 BC4 53 DLE A 12 ? DLE A 12 . ? 1_555 ? 122 BC4 53 TRP A 13 ? TRP A 13 . ? 1_555 ? 123 BC4 53 DLE A 14 ? DLE A 14 . ? 1_555 ? 124 BC4 53 TRP A 15 ? TRP A 15 . ? 1_555 ? 125 BC4 53 ETA A 16 ? ETA A 16 . ? 1_555 ? 126 BC4 53 NA E . ? NA A 1001 . ? 1_555 ? 127 BC4 53 IOD F . ? IOD A 1020 . ? 1_555 ? 128 BC4 53 HOH S . ? HOH A 2002 . ? 2_664 ? 129 BC4 53 NA J . ? NA B 1000 . ? 1_555 ? 130 BC4 53 IOD K . ? IOD B 1026 . ? 3_746 ? 131 BC4 53 IOD K . ? IOD B 1026 . ? 1_555 ? 132 BC4 53 HOH T . ? HOH B 2001 . ? 1_555 ? 133 BC4 53 HOH T . ? HOH B 2003 . ? 1_555 ? 134 BC4 53 HOH T . ? HOH B 2004 . ? 1_555 ? 135 BC4 53 HOH T . ? HOH B 2005 . ? 1_555 ? 136 BC4 53 HOH T . ? HOH B 2006 . ? 1_555 ? 137 BC4 53 HOH T . ? HOH B 2007 . ? 1_555 ? 138 BC4 53 HOH T . ? HOH B 2008 . ? 1_555 ? 139 BC4 53 HOH T . ? HOH B 2009 . ? 1_555 ? 140 BC4 53 HOH T . ? HOH B 2010 . ? 1_555 ? 141 BC4 53 HOH T . ? HOH B 2012 . ? 1_555 ? 142 BC4 53 HOH T . ? HOH B 2013 . ? 1_555 ? 143 BC4 53 HOH T . ? HOH B 2014 . ? 1_555 ? 144 BC4 53 DLE C 4 ? DLE C 4 . ? 1_555 ? 145 BC4 53 ALA C 5 ? ALA C 5 . ? 3_756 ? 146 BC4 53 DVA C 6 ? DVA C 6 . ? 3_756 ? 147 BC4 53 TRP C 11 ? TRP C 11 . ? 1_555 ? 148 BC4 53 TRP C 13 ? TRP C 13 . ? 4_456 ? 149 BC4 53 ETA C 16 ? ETA C 16 . ? 4_556 ? 150 BC4 53 DVA D 6 ? DVA D 6 . ? 4_556 ? 151 BC4 53 TRP D 9 ? TRP D 9 . ? 3_756 ? 152 BC4 53 TRP D 9 ? TRP D 9 . ? 1_565 ? 153 BC4 53 DLE D 10 ? DLE D 10 . ? 3_756 ? 154 BC4 53 PHE D 11 ? PHE D 11 . ? 3_756 ? 155 BC4 53 PHE D 11 ? PHE D 11 . ? 1_555 ? 156 BC4 53 DLE D 12 ? DLE D 12 . ? 1_555 ? 157 BC4 53 TRP D 13 ? TRP D 13 . ? 1_555 ? 158 BC4 53 DLE D 14 ? DLE D 14 . ? 3_656 ? 159 BC4 53 TRP D 15 ? TRP D 15 . ? 1_565 ? 160 BC4 53 IOD Q . ? IOD D 1022 . ? 3_656 ? 161 BC4 53 IOD R . ? IOD D 1023 . ? 2_665 ? 162 BC5 46 DLE A 4 ? DLE A 4 . ? 1_555 ? 163 BC5 46 TRP A 9 ? TRP A 9 . ? 4_456 ? 164 BC5 46 TRP A 11 ? TRP A 11 . ? 1_555 ? 165 BC5 46 DLE A 12 ? DLE A 12 . ? 4_556 ? 166 BC5 46 TRP A 13 ? TRP A 13 . ? 4_556 ? 167 BC5 46 DLE A 14 ? DLE A 14 . ? 1_545 ? 168 BC5 46 TRP A 15 ? TRP A 15 . ? 4_456 ? 169 BC5 46 TRP A 15 ? TRP A 15 . ? 1_545 ? 170 BC5 46 ETA A 16 ? ETA A 16 . ? 4_456 ? 171 BC5 46 IOD F . ? IOD A 1020 . ? 1_555 ? 172 BC5 46 IOD H . ? IOD A 1025 . ? 4_456 ? 173 BC5 46 DLE B 4 ? DLE B 4 . ? 1_555 ? 174 BC5 46 DVA B 6 ? DVA B 6 . ? 4_456 ? 175 BC5 46 TRP B 9 ? TRP B 9 . ? 4_556 ? 176 BC5 46 DLE B 10 ? DLE B 10 . ? 3_646 ? 177 BC5 46 PHE B 11 ? PHE B 11 . ? 1_555 ? 178 BC5 46 DLE B 12 ? DLE B 12 . ? 1_555 ? 179 BC5 46 TRP B 13 ? TRP B 13 . ? 3_746 ? 180 BC5 46 DLE B 14 ? DLE B 14 . ? 3_746 ? 181 BC5 46 NA N . ? NA C 1011 . ? 1_555 ? 182 BC5 46 HOH U . ? HOH C 2001 . ? 1_555 ? 183 BC5 46 HOH U . ? HOH C 2002 . ? 1_555 ? 184 BC5 46 HOH U . ? HOH C 2003 . ? 1_555 ? 185 BC5 46 HOH U . ? HOH C 2005 . ? 1_555 ? 186 BC5 46 HOH U . ? HOH C 2006 . ? 1_555 ? 187 BC5 46 HOH U . ? HOH C 2007 . ? 1_555 ? 188 BC5 46 HOH U . ? HOH C 2009 . ? 1_555 ? 189 BC5 46 GLY D 2 ? GLY D 2 . ? 2_655 ? 190 BC5 46 GLY D 2 ? GLY D 2 . ? 1_555 ? 191 BC5 46 ALA D 3 ? ALA D 3 . ? 2_655 ? 192 BC5 46 ALA D 3 ? ALA D 3 . ? 1_555 ? 193 BC5 46 DLE D 4 ? DLE D 4 . ? 1_555 ? 194 BC5 46 ALA D 5 ? ALA D 5 . ? 1_555 ? 195 BC5 46 DVA D 6 ? DVA D 6 . ? 1_555 ? 196 BC5 46 VAL D 7 ? VAL D 7 . ? 1_555 ? 197 BC5 46 DVA D 8 ? DVA D 8 . ? 1_555 ? 198 BC5 46 TRP D 9 ? TRP D 9 . ? 4_446 ? 199 BC5 46 TRP D 9 ? TRP D 9 . ? 1_555 ? 200 BC5 46 DLE D 10 ? DLE D 10 . ? 1_555 ? 201 BC5 46 PHE D 11 ? PHE D 11 . ? 1_555 ? 202 BC5 46 DLE D 12 ? DLE D 12 . ? 1_555 ? 203 BC5 46 TRP D 13 ? TRP D 13 . ? 1_555 ? 204 BC5 46 DLE D 14 ? DLE D 14 . ? 1_555 ? 205 BC5 46 TRP D 15 ? TRP D 15 . ? 1_555 ? 206 BC5 46 ETA D 16 ? ETA D 16 . ? 1_555 ? 207 BC5 46 NA P . ? NA D 1010 . ? 1_555 ? 208 BC6 50 DVA A 6 ? DVA A 6 . ? 3_646 ? 209 BC6 50 DVA A 6 ? DVA A 6 . ? 1_545 ? 210 BC6 50 VAL A 7 ? VAL A 7 . ? 1_545 ? 211 BC6 50 TRP A 11 ? TRP A 11 . ? 1_555 ? 212 BC6 50 TRP A 13 ? TRP A 13 . ? 4_556 ? 213 BC6 50 DLE A 14 ? DLE A 14 . ? 1_545 ? 214 BC6 50 IOD H . ? IOD A 1025 . ? 1_545 ? 215 BC6 50 DVA B 6 ? DVA B 6 . ? 4_456 ? 216 BC6 50 VAL B 7 ? VAL B 7 . ? 1_545 ? 217 BC6 50 PHE B 11 ? PHE B 11 . ? 3_646 ? 218 BC6 50 PHE B 11 ? PHE B 11 . ? 1_555 ? 219 BC6 50 DLE B 12 ? DLE B 12 . ? 1_555 ? 220 BC6 50 TRP B 13 ? TRP B 13 . ? 3_746 ? 221 BC6 50 DLE B 14 ? DLE B 14 . ? 3_746 ? 222 BC6 50 TRP B 15 ? TRP B 15 . ? 1_545 ? 223 BC6 50 ETA B 16 ? ETA B 16 . ? 1_545 ? 224 BC6 50 GLY C 2 ? GLY C 2 . ? 2_654 ? 225 BC6 50 GLY C 2 ? GLY C 2 . ? 1_555 ? 226 BC6 50 ALA C 3 ? ALA C 3 . ? 2_654 ? 227 BC6 50 ALA C 3 ? ALA C 3 . ? 1_555 ? 228 BC6 50 DLE C 4 ? DLE C 4 . ? 1_555 ? 229 BC6 50 DLE C 4 ? DLE C 4 . ? 2_654 ? 230 BC6 50 ALA C 5 ? ALA C 5 . ? 1_555 ? 231 BC6 50 DVA C 6 ? DVA C 6 . ? 1_555 ? 232 BC6 50 VAL C 7 ? VAL C 7 . ? 1_555 ? 233 BC6 50 DVA C 8 ? DVA C 8 . ? 1_555 ? 234 BC6 50 TRP C 9 ? TRP C 9 . ? 1_555 ? 235 BC6 50 DLE C 10 ? DLE C 10 . ? 1_555 ? 236 BC6 50 TRP C 11 ? TRP C 11 . ? 1_555 ? 237 BC6 50 DLE C 12 ? DLE C 12 . ? 1_555 ? 238 BC6 50 TRP C 13 ? TRP C 13 . ? 1_555 ? 239 BC6 50 DLE C 14 ? DLE C 14 . ? 1_555 ? 240 BC6 50 TRP C 15 ? TRP C 15 . ? 1_555 ? 241 BC6 50 TRP C 15 ? TRP C 15 . ? 4_546 ? 242 BC6 50 ETA C 16 ? ETA C 16 . ? 1_555 ? 243 BC6 50 NA N . ? NA C 1011 . ? 1_555 ? 244 BC6 50 HOH U . ? HOH C 2001 . ? 2_654 ? 245 BC6 50 HOH U . ? HOH C 2003 . ? 1_555 ? 246 BC6 50 HOH U . ? HOH C 2009 . ? 4_546 ? 247 BC6 50 NA P . ? NA D 1010 . ? 1_555 ? 248 BC6 50 IOD Q . ? IOD D 1022 . ? 1_555 ? 249 BC6 50 IOD Q . ? IOD D 1022 . ? 3_646 ? 250 BC6 50 HOH V . ? HOH D 2001 . ? 1_555 ? 251 BC6 50 HOH V . ? HOH D 2003 . ? 1_555 ? 252 BC6 50 HOH V . ? HOH D 2004 . ? 1_555 ? 253 BC6 50 HOH V . ? HOH D 2006 . ? 1_555 ? 254 BC6 50 HOH V . ? HOH D 2007 . ? 1_555 ? 255 BC6 50 HOH V . ? HOH D 2008 . ? 1_555 ? 256 BC6 50 HOH V . ? HOH D 2011 . ? 1_555 ? 257 BC6 50 HOH V . ? HOH D 2014 . ? 1_555 ? # _database_PDB_matrix.entry_id 3L8L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3L8L _atom_sites.fract_transf_matrix[1][1] 0.033539 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031995 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019355 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I N NA O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 FVA 1 1 1 FVA FVA A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 DLE 4 4 4 DLE DLE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 DVA 6 6 6 DVA DVA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 DVA 8 8 8 DVA DVA A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 DLE 10 10 10 DLE DLE A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 DLE 12 12 12 DLE DLE A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 DLE 14 14 14 DLE DLE A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ETA 16 16 16 ETA ETA A . n B 2 1 FVA 1 1 1 FVA FVA B . n B 2 2 GLY 2 2 2 GLY GLY B . n B 2 3 ALA 3 3 3 ALA ALA B . n B 2 4 DLE 4 4 4 DLE DLE B . n B 2 5 ALA 5 5 5 ALA ALA B . n B 2 6 DVA 6 6 6 DVA DVA B . n B 2 7 VAL 7 7 7 VAL VAL B . n B 2 8 DVA 8 8 8 DVA DVA B . n B 2 9 TRP 9 9 9 TRP TRP B . n B 2 10 DLE 10 10 10 DLE DLE B . n B 2 11 PHE 11 11 11 PHE PHE B . y B 2 11 TRP 11 11 11 TRP TRP B . y B 2 12 DLE 12 12 12 DLE DLE B . n B 2 13 TRP 13 13 13 TRP TRP B . n B 2 14 DLE 14 14 14 DLE DLE B . n B 2 15 TRP 15 15 15 TRP TRP B . n B 2 16 ETA 16 16 16 ETA ETA B . n C 1 1 FVA 1 1 1 FVA FVA C . n C 1 2 GLY 2 2 2 GLY GLY C . n C 1 3 ALA 3 3 3 ALA ALA C . n C 1 4 DLE 4 4 4 DLE DLE C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 DVA 6 6 6 DVA DVA C . n C 1 7 VAL 7 7 7 VAL VAL C . n C 1 8 DVA 8 8 8 DVA DVA C . n C 1 9 TRP 9 9 9 TRP TRP C . n C 1 10 DLE 10 10 10 DLE DLE C . n C 1 11 TRP 11 11 11 TRP TRP C . n C 1 12 DLE 12 12 12 DLE DLE C . n C 1 13 TRP 13 13 13 TRP TRP C . n C 1 14 DLE 14 14 14 DLE DLE C . n C 1 15 TRP 15 15 15 TRP TRP C . n C 1 16 ETA 16 16 16 ETA ETA C . n D 2 1 FVA 1 1 1 FVA FVA D . n D 2 2 GLY 2 2 2 GLY GLY D . n D 2 3 ALA 3 3 3 ALA ALA D . n D 2 4 DLE 4 4 4 DLE DLE D . n D 2 5 ALA 5 5 5 ALA ALA D . n D 2 6 DVA 6 6 6 DVA DVA D . n D 2 7 VAL 7 7 7 VAL VAL D . n D 2 8 DVA 8 8 8 DVA DVA D . n D 2 9 TRP 9 9 9 TRP TRP D . n D 2 10 DLE 10 10 10 DLE DLE D . n D 2 11 PHE 11 11 11 PHE PHE D . y D 2 11 TRP 11 11 11 TRP TRP D . y D 2 12 DLE 12 12 12 DLE DLE D . n D 2 13 TRP 13 13 13 TRP TRP D . n D 2 14 DLE 14 14 14 DLE DLE D . n D 2 15 TRP 15 15 15 TRP TRP D . n D 2 16 ETA 16 16 16 ETA ETA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA 1 1001 1001 NA NA A . F 4 IOD 1 1020 1020 IOD IOD A . G 4 IOD 1 1021 1021 IOD IOD A . H 4 IOD 1 1025 1025 IOD IOD A . I 5 MOH 1 3001 3001 MOH MOH A . J 3 NA 1 1000 1000 NA NA B . K 4 IOD 1 1026 1026 IOD IOD B . L 5 MOH 1 2000 2000 MOH MOH B . M 5 MOH 1 3002 3002 MOH MOH B . N 3 NA 1 1011 1011 NA NA C . O 4 IOD 1 1024 1024 IOD IOD C . P 3 NA 1 1010 1010 NA NA D . Q 4 IOD 1 1022 1022 IOD IOD D . R 4 IOD 1 1023 1023 IOD IOD D . S 6 HOH 1 2001 2001 HOH HOH A . S 6 HOH 2 2002 2002 HOH HOH A . S 6 HOH 3 2003 2003 HOH HOH A . S 6 HOH 4 2004 2004 HOH HOH A . S 6 HOH 5 2005 2005 HOH HOH A . T 6 HOH 1 2001 2001 HOH HOH B . T 6 HOH 2 2002 2002 HOH HOH B . T 6 HOH 3 2003 2003 HOH HOH B . T 6 HOH 4 2004 2004 HOH HOH B . T 6 HOH 5 2005 2005 HOH HOH B . T 6 HOH 6 2006 2006 HOH HOH B . T 6 HOH 7 2007 2007 HOH HOH B . T 6 HOH 8 2008 2008 HOH HOH B . T 6 HOH 9 2009 2009 HOH HOH B . T 6 HOH 10 2010 2010 HOH HOH B . T 6 HOH 11 2011 2011 HOH HOH B . T 6 HOH 12 2012 2012 HOH HOH B . T 6 HOH 13 2013 2013 HOH HOH B . T 6 HOH 14 2014 2014 HOH HOH B . U 6 HOH 1 2001 2001 HOH HOH C . U 6 HOH 2 2002 2002 HOH HOH C . U 6 HOH 3 2003 2003 HOH HOH C . U 6 HOH 4 2004 2004 HOH HOH C . U 6 HOH 5 2005 2005 HOH HOH C . U 6 HOH 6 2006 2006 HOH HOH C . U 6 HOH 7 2007 2007 HOH HOH C . U 6 HOH 8 2008 2008 HOH HOH C . U 6 HOH 9 2009 2009 HOH HOH C . V 6 HOH 1 2001 2001 HOH HOH D . V 6 HOH 2 2002 2002 HOH HOH D . V 6 HOH 3 2003 2003 HOH HOH D . V 6 HOH 4 2004 2004 HOH HOH D . V 6 HOH 5 2005 2005 HOH HOH D . V 6 HOH 6 2006 2006 HOH HOH D . V 6 HOH 7 2007 2007 HOH HOH D . V 6 HOH 8 2008 2008 HOH HOH D . V 6 HOH 9 2009 2009 HOH HOH D . V 6 HOH 10 2010 2010 HOH HOH D . V 6 HOH 11 2011 2011 HOH HOH D . V 6 HOH 12 2012 2012 HOH HOH D . V 6 HOH 13 2013 2013 HOH HOH D . V 6 HOH 14 2014 2014 HOH HOH D . # _pdbx_molecule_features.prd_id PRD_000152 _pdbx_molecule_features.name 'GRAMICIDIN D' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;GRAMICIDIN D IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 1). THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16). ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000152 A 2 PRD_000152 B 3 PRD_000152 C 4 PRD_000152 D # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,K,L,M,S,T 2 1 C,D,N,O,P,Q,R,U,V # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2450 ? 1 MORE -13 ? 1 'SSA (A^2)' 2930 ? 2 'ABSA (A^2)' 2380 ? 2 MORE -12 ? 2 'SSA (A^2)' 2900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? A DLE 10 ? A DLE 10 ? 1_555 141.7 ? 2 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? B DVA 6 ? B DVA 6 ? 1_555 86.1 ? 3 O ? A DLE 10 ? A DLE 10 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? B DVA 6 ? B DVA 6 ? 1_555 64.9 ? 4 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2005 ? 1_555 77.4 ? 5 O ? A DLE 10 ? A DLE 10 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2005 ? 1_555 123.0 ? 6 O ? B DVA 6 ? B DVA 6 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2005 ? 1_555 159.5 ? 7 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2006 ? 1_555 123.2 ? 8 O ? A DLE 10 ? A DLE 10 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2006 ? 1_555 90.6 ? 9 O ? B DVA 6 ? B DVA 6 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2006 ? 1_555 107.7 ? 10 O ? T HOH . ? B HOH 2005 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2006 ? 1_555 91.7 ? 11 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2009 ? 1_555 93.4 ? 12 O ? A DLE 10 ? A DLE 10 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2009 ? 1_555 94.8 ? 13 O ? B DVA 6 ? B DVA 6 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2009 ? 1_555 141.9 ? 14 O ? T HOH . ? B HOH 2005 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2009 ? 1_555 30.3 ? 15 O ? T HOH . ? B HOH 2006 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2009 ? 1_555 104.3 ? 16 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 95.3 ? 17 O ? A DLE 10 ? A DLE 10 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 93.1 ? 18 O ? B DVA 6 ? B DVA 6 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 141.6 ? 19 O ? T HOH . ? B HOH 2005 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 31.6 ? 20 O ? T HOH . ? B HOH 2006 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 103.5 ? 21 O ? T HOH . ? B HOH 2009 ? 1_555 NA ? E NA . ? A NA 1001 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 1.9 ? 22 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? B DVA 6 ? B DVA 6 ? 1_555 87.4 ? 23 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2005 ? 1_555 80.4 ? 24 O ? B DVA 6 ? B DVA 6 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2005 ? 1_555 141.5 ? 25 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2006 ? 1_555 156.1 ? 26 O ? B DVA 6 ? B DVA 6 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2006 ? 1_555 109.1 ? 27 O ? T HOH . ? B HOH 2005 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2006 ? 1_555 95.5 ? 28 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2009 ? 1_555 90.0 ? 29 O ? B DVA 6 ? B DVA 6 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2009 ? 1_555 113.8 ? 30 O ? T HOH . ? B HOH 2005 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2009 ? 1_555 30.9 ? 31 O ? T HOH . ? B HOH 2006 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2009 ? 1_555 98.5 ? 32 O ? A DVA 8 ? A DVA 8 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 91.0 ? 33 O ? B DVA 6 ? B DVA 6 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 114.9 ? 34 O ? T HOH . ? B HOH 2005 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 30.3 ? 35 O ? T HOH . ? B HOH 2006 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 97.2 ? 36 O ? T HOH . ? B HOH 2009 ? 1_555 NA ? J NA . ? B NA 1000 ? 1_555 O ? T HOH . ? B HOH 2010 ? 1_555 1.4 ? 37 O ? C DVA 8 ? C DVA 8 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? C DLE 10 ? C DLE 10 ? 1_555 142.3 ? 38 O ? C DVA 8 ? C DVA 8 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? U HOH . ? C HOH 2005 ? 1_555 67.6 ? 39 O ? C DLE 10 ? C DLE 10 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? U HOH . ? C HOH 2005 ? 1_555 115.5 ? 40 O ? C DVA 8 ? C DVA 8 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? U HOH . ? C HOH 2007 ? 1_555 151.3 ? 41 O ? C DLE 10 ? C DLE 10 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? U HOH . ? C HOH 2007 ? 1_555 62.4 ? 42 O ? U HOH . ? C HOH 2005 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? U HOH . ? C HOH 2007 ? 1_555 121.6 ? 43 O ? C DVA 8 ? C DVA 8 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? D DVA 6 ? D DVA 6 ? 1_555 84.3 ? 44 O ? C DLE 10 ? C DLE 10 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? D DVA 6 ? D DVA 6 ? 1_555 68.5 ? 45 O ? U HOH . ? C HOH 2005 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? D DVA 6 ? D DVA 6 ? 1_555 136.6 ? 46 O ? U HOH . ? C HOH 2007 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? D DVA 6 ? D DVA 6 ? 1_555 99.1 ? 47 O ? C DVA 8 ? C DVA 8 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2008 ? 1_555 123.7 ? 48 O ? C DLE 10 ? C DLE 10 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2008 ? 1_555 90.6 ? 49 O ? U HOH . ? C HOH 2005 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2008 ? 1_555 114.3 ? 50 O ? U HOH . ? C HOH 2007 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2008 ? 1_555 28.4 ? 51 O ? D DVA 6 ? D DVA 6 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2008 ? 1_555 108.7 ? 52 O ? C DVA 8 ? C DVA 8 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2009 ? 1_555 80.5 ? 53 O ? C DLE 10 ? C DLE 10 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2009 ? 1_555 113.4 ? 54 O ? U HOH . ? C HOH 2005 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2009 ? 1_555 18.0 ? 55 O ? U HOH . ? C HOH 2007 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2009 ? 1_555 104.2 ? 56 O ? D DVA 6 ? D DVA 6 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2009 ? 1_555 154.4 ? 57 O ? V HOH . ? D HOH 2008 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2009 ? 1_555 96.9 ? 58 O ? C DVA 8 ? C DVA 8 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2011 ? 1_555 96.9 ? 59 O ? C DLE 10 ? C DLE 10 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2011 ? 1_555 90.3 ? 60 O ? U HOH . ? C HOH 2005 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2011 ? 1_555 29.5 ? 61 O ? U HOH . ? C HOH 2007 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2011 ? 1_555 97.2 ? 62 O ? D DVA 6 ? D DVA 6 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2011 ? 1_555 142.8 ? 63 O ? V HOH . ? D HOH 2008 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2011 ? 1_555 101.4 ? 64 O ? V HOH . ? D HOH 2009 ? 1_555 NA ? N NA . ? C NA 1011 ? 1_555 O ? V HOH . ? D HOH 2011 ? 1_555 23.4 ? 65 O ? C DLE 10 ? C DLE 10 ? 1_555 NA ? P NA . ? D NA 1010 ? 1_555 O ? D DLE 4 ? D DLE 4 ? 1_555 87.4 ? 66 O ? C DLE 10 ? C DLE 10 ? 1_555 NA ? P NA . ? D NA 1010 ? 1_555 O ? V HOH . ? D HOH 2003 ? 1_555 140.6 ? 67 O ? D DLE 4 ? D DLE 4 ? 1_555 NA ? P NA . ? D NA 1010 ? 1_555 O ? V HOH . ? D HOH 2003 ? 1_555 61.0 ? 68 O ? C DLE 10 ? C DLE 10 ? 1_555 NA ? P NA . ? D NA 1010 ? 1_555 O ? V HOH . ? D HOH 2007 ? 1_555 89.7 ? 69 O ? D DLE 4 ? D DLE 4 ? 1_555 NA ? P NA . ? D NA 1010 ? 1_555 O ? V HOH . ? D HOH 2007 ? 1_555 132.9 ? 70 O ? V HOH . ? D HOH 2003 ? 1_555 NA ? P NA . ? D NA 1010 ? 1_555 O ? V HOH . ? D HOH 2007 ? 1_555 128.6 ? 71 O ? C DLE 10 ? C DLE 10 ? 1_555 NA ? P NA . ? D NA 1010 ? 1_555 O ? V HOH . ? D HOH 2008 ? 1_555 111.4 ? 72 O ? D DLE 4 ? D DLE 4 ? 1_555 NA ? P NA . ? D NA 1010 ? 1_555 O ? V HOH . ? D HOH 2008 ? 1_555 139.3 ? 73 O ? V HOH . ? D HOH 2003 ? 1_555 NA ? P NA . ? D NA 1010 ? 1_555 O ? V HOH . ? D HOH 2008 ? 1_555 107.9 ? 74 O ? V HOH . ? D HOH 2007 ? 1_555 NA ? P NA . ? D NA 1010 ? 1_555 O ? V HOH . ? D HOH 2008 ? 1_555 23.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-28 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-03-28 6 'Structure model' 1 5 2012-12-12 7 'Structure model' 1 6 2013-02-13 8 'Structure model' 1 7 2023-09-06 9 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Database references' 9 6 'Structure model' Other 10 7 'Structure model' 'Derived calculations' 11 8 'Structure model' 'Data collection' 12 8 'Structure model' 'Database references' 13 8 'Structure model' 'Derived calculations' 14 8 'Structure model' 'Refinement description' 15 9 'Structure model' 'Atomic model' 16 9 'Structure model' 'Data collection' 17 9 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 8 'Structure model' chem_comp_atom 2 8 'Structure model' chem_comp_bond 3 8 'Structure model' database_2 4 8 'Structure model' pdbx_initial_refinement_model 5 8 'Structure model' pdbx_struct_conn_angle 6 8 'Structure model' struct_conn 7 8 'Structure model' struct_ref_seq_dif 8 8 'Structure model' struct_site 9 9 'Structure model' atom_site 10 9 'Structure model' atom_site_anisotrop 11 9 'Structure model' chem_comp_atom 12 9 'Structure model' chem_comp_bond 13 9 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 8 'Structure model' '_database_2.pdbx_DOI' 2 8 'Structure model' '_database_2.pdbx_database_accession' 3 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 8 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 10 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 8 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 8 'Structure model' '_pdbx_struct_conn_angle.value' 16 8 'Structure model' '_struct_conn.conn_type_id' 17 8 'Structure model' '_struct_conn.id' 18 8 'Structure model' '_struct_conn.pdbx_dist_value' 19 8 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 8 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 21 8 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 22 8 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 8 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 8 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 8 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 8 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 8 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 8 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 8 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 8 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 8 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 8 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 8 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 8 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 8 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 8 'Structure model' '_struct_ref_seq_dif.details' 37 8 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 8 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 8 'Structure model' '_struct_site.pdbx_auth_seq_id' 40 9 'Structure model' '_atom_site.auth_atom_id' 41 9 'Structure model' '_atom_site.label_atom_id' 42 9 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 43 9 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 44 9 'Structure model' '_chem_comp_atom.atom_id' 45 9 'Structure model' '_chem_comp_bond.atom_id_1' 46 9 'Structure model' '_chem_comp_bond.atom_id_2' 47 9 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_entry_details.entry_id 3L8L _pdbx_entry_details.compound_details ;GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM BACILLUS BREVIS AND CALLED COLLECTIVELY GRAMICIDIN D. HERE, GRAMICIDIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A DLE 10 ? B CA A DLE 10 ? ? C A DLE 10 ? ? 96.22 110.20 -13.98 1.90 N 2 1 CA C TRP 15 ? ? CB C TRP 15 ? ? CG C TRP 15 ? ? 127.03 113.70 13.33 1.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 DLE N N N N 14 DLE CA C N R 15 DLE CB C N N 16 DLE CG C N N 17 DLE CD1 C N N 18 DLE CD2 C N N 19 DLE C C N N 20 DLE O O N N 21 DLE OXT O N N 22 DLE H H N N 23 DLE H2 H N N 24 DLE HA H N N 25 DLE HB2 H N N 26 DLE HB3 H N N 27 DLE HG H N N 28 DLE HD11 H N N 29 DLE HD12 H N N 30 DLE HD13 H N N 31 DLE HD21 H N N 32 DLE HD22 H N N 33 DLE HD23 H N N 34 DLE HXT H N N 35 DVA N N N N 36 DVA CA C N R 37 DVA CB C N N 38 DVA CG1 C N N 39 DVA CG2 C N N 40 DVA C C N N 41 DVA O O N N 42 DVA OXT O N N 43 DVA H H N N 44 DVA H2 H N N 45 DVA HA H N N 46 DVA HB H N N 47 DVA HG11 H N N 48 DVA HG12 H N N 49 DVA HG13 H N N 50 DVA HG21 H N N 51 DVA HG22 H N N 52 DVA HG23 H N N 53 DVA HXT H N N 54 ETA CA C N N 55 ETA N N N N 56 ETA C C N N 57 ETA O O N N 58 ETA HA1 H N N 59 ETA HA2 H N N 60 ETA H H N N 61 ETA H2 H N N 62 ETA HB1 H N N 63 ETA HB2 H N N 64 ETA HO H N N 65 FVA C C N N 66 FVA N N N N 67 FVA O O N N 68 FVA CA C N S 69 FVA CB C N N 70 FVA CG1 C N N 71 FVA CG2 C N N 72 FVA H H N N 73 FVA HA H N N 74 FVA HB H N N 75 FVA HG11 H N N 76 FVA HG12 H N N 77 FVA HG13 H N N 78 FVA HG21 H N N 79 FVA HG22 H N N 80 FVA HG23 H N N 81 FVA O1 O N N 82 FVA CN C N N 83 FVA HN H N N 84 FVA OXT O N N 85 FVA HXT H N N 86 GLY N N N N 87 GLY CA C N N 88 GLY C C N N 89 GLY O O N N 90 GLY OXT O N N 91 GLY H H N N 92 GLY H2 H N N 93 GLY HA2 H N N 94 GLY HA3 H N N 95 GLY HXT H N N 96 HOH O O N N 97 HOH H1 H N N 98 HOH H2 H N N 99 IOD I I N N 100 MOH C C N N 101 MOH O O N N 102 MOH H1 H N N 103 MOH H2 H N N 104 MOH H3 H N N 105 MOH HO H N N 106 NA NA NA N N 107 PHE N N N N 108 PHE CA C N S 109 PHE C C N N 110 PHE O O N N 111 PHE CB C N N 112 PHE CG C Y N 113 PHE CD1 C Y N 114 PHE CD2 C Y N 115 PHE CE1 C Y N 116 PHE CE2 C Y N 117 PHE CZ C Y N 118 PHE OXT O N N 119 PHE H H N N 120 PHE H2 H N N 121 PHE HA H N N 122 PHE HB2 H N N 123 PHE HB3 H N N 124 PHE HD1 H N N 125 PHE HD2 H N N 126 PHE HE1 H N N 127 PHE HE2 H N N 128 PHE HZ H N N 129 PHE HXT H N N 130 TRP N N N N 131 TRP CA C N S 132 TRP C C N N 133 TRP O O N N 134 TRP CB C N N 135 TRP CG C Y N 136 TRP CD1 C Y N 137 TRP CD2 C Y N 138 TRP NE1 N Y N 139 TRP CE2 C Y N 140 TRP CE3 C Y N 141 TRP CZ2 C Y N 142 TRP CZ3 C Y N 143 TRP CH2 C Y N 144 TRP OXT O N N 145 TRP H H N N 146 TRP H2 H N N 147 TRP HA H N N 148 TRP HB2 H N N 149 TRP HB3 H N N 150 TRP HD1 H N N 151 TRP HE1 H N N 152 TRP HE3 H N N 153 TRP HZ2 H N N 154 TRP HZ3 H N N 155 TRP HH2 H N N 156 TRP HXT H N N 157 VAL N N N N 158 VAL CA C N S 159 VAL C C N N 160 VAL O O N N 161 VAL CB C N N 162 VAL CG1 C N N 163 VAL CG2 C N N 164 VAL OXT O N N 165 VAL H H N N 166 VAL H2 H N N 167 VAL HA H N N 168 VAL HB H N N 169 VAL HG11 H N N 170 VAL HG12 H N N 171 VAL HG13 H N N 172 VAL HG21 H N N 173 VAL HG22 H N N 174 VAL HG23 H N N 175 VAL HXT H N N 176 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 DLE N CA sing N N 13 DLE N H sing N N 14 DLE N H2 sing N N 15 DLE CA CB sing N N 16 DLE CA C sing N N 17 DLE CA HA sing N N 18 DLE CB CG sing N N 19 DLE CB HB2 sing N N 20 DLE CB HB3 sing N N 21 DLE CG CD1 sing N N 22 DLE CG CD2 sing N N 23 DLE CG HG sing N N 24 DLE CD1 HD11 sing N N 25 DLE CD1 HD12 sing N N 26 DLE CD1 HD13 sing N N 27 DLE CD2 HD21 sing N N 28 DLE CD2 HD22 sing N N 29 DLE CD2 HD23 sing N N 30 DLE C O doub N N 31 DLE C OXT sing N N 32 DLE OXT HXT sing N N 33 DVA N CA sing N N 34 DVA N H sing N N 35 DVA N H2 sing N N 36 DVA CA CB sing N N 37 DVA CA C sing N N 38 DVA CA HA sing N N 39 DVA CB CG1 sing N N 40 DVA CB CG2 sing N N 41 DVA CB HB sing N N 42 DVA CG1 HG11 sing N N 43 DVA CG1 HG12 sing N N 44 DVA CG1 HG13 sing N N 45 DVA CG2 HG21 sing N N 46 DVA CG2 HG22 sing N N 47 DVA CG2 HG23 sing N N 48 DVA C O doub N N 49 DVA C OXT sing N N 50 DVA OXT HXT sing N N 51 ETA CA N sing N N 52 ETA CA C sing N N 53 ETA CA HA1 sing N N 54 ETA CA HA2 sing N N 55 ETA N H sing N N 56 ETA N H2 sing N N 57 ETA C O sing N N 58 ETA C HB1 sing N N 59 ETA C HB2 sing N N 60 ETA O HO sing N N 61 FVA O C doub N N 62 FVA C CA sing N N 63 FVA H N sing N N 64 FVA N CN sing N N 65 FVA N CA sing N N 66 FVA CB CA sing N N 67 FVA CA HA sing N N 68 FVA HB CB sing N N 69 FVA CB CG2 sing N N 70 FVA CB CG1 sing N N 71 FVA HG13 CG1 sing N N 72 FVA HG12 CG1 sing N N 73 FVA CG1 HG11 sing N N 74 FVA HG22 CG2 sing N N 75 FVA HG23 CG2 sing N N 76 FVA CG2 HG21 sing N N 77 FVA CN O1 doub N N 78 FVA HN CN sing N N 79 FVA C OXT sing N N 80 FVA OXT HXT sing N N 81 GLY N CA sing N N 82 GLY N H sing N N 83 GLY N H2 sing N N 84 GLY CA C sing N N 85 GLY CA HA2 sing N N 86 GLY CA HA3 sing N N 87 GLY C O doub N N 88 GLY C OXT sing N N 89 GLY OXT HXT sing N N 90 HOH O H1 sing N N 91 HOH O H2 sing N N 92 MOH C O sing N N 93 MOH C H1 sing N N 94 MOH C H2 sing N N 95 MOH C H3 sing N N 96 MOH O HO sing N N 97 PHE N CA sing N N 98 PHE N H sing N N 99 PHE N H2 sing N N 100 PHE CA C sing N N 101 PHE CA CB sing N N 102 PHE CA HA sing N N 103 PHE C O doub N N 104 PHE C OXT sing N N 105 PHE CB CG sing N N 106 PHE CB HB2 sing N N 107 PHE CB HB3 sing N N 108 PHE CG CD1 doub Y N 109 PHE CG CD2 sing Y N 110 PHE CD1 CE1 sing Y N 111 PHE CD1 HD1 sing N N 112 PHE CD2 CE2 doub Y N 113 PHE CD2 HD2 sing N N 114 PHE CE1 CZ doub Y N 115 PHE CE1 HE1 sing N N 116 PHE CE2 CZ sing Y N 117 PHE CE2 HE2 sing N N 118 PHE CZ HZ sing N N 119 PHE OXT HXT sing N N 120 TRP N CA sing N N 121 TRP N H sing N N 122 TRP N H2 sing N N 123 TRP CA C sing N N 124 TRP CA CB sing N N 125 TRP CA HA sing N N 126 TRP C O doub N N 127 TRP C OXT sing N N 128 TRP CB CG sing N N 129 TRP CB HB2 sing N N 130 TRP CB HB3 sing N N 131 TRP CG CD1 doub Y N 132 TRP CG CD2 sing Y N 133 TRP CD1 NE1 sing Y N 134 TRP CD1 HD1 sing N N 135 TRP CD2 CE2 doub Y N 136 TRP CD2 CE3 sing Y N 137 TRP NE1 CE2 sing Y N 138 TRP NE1 HE1 sing N N 139 TRP CE2 CZ2 sing Y N 140 TRP CE3 CZ3 doub Y N 141 TRP CE3 HE3 sing N N 142 TRP CZ2 CH2 doub Y N 143 TRP CZ2 HZ2 sing N N 144 TRP CZ3 CH2 sing Y N 145 TRP CZ3 HZ3 sing N N 146 TRP CH2 HH2 sing N N 147 TRP OXT HXT sing N N 148 VAL N CA sing N N 149 VAL N H sing N N 150 VAL N H2 sing N N 151 VAL CA C sing N N 152 VAL CA CB sing N N 153 VAL CA HA sing N N 154 VAL C O doub N N 155 VAL C OXT sing N N 156 VAL CB CG1 sing N N 157 VAL CB CG2 sing N N 158 VAL CB HB sing N N 159 VAL CG1 HG11 sing N N 160 VAL CG1 HG12 sing N N 161 VAL CG1 HG13 sing N N 162 VAL CG2 HG21 sing N N 163 VAL CG2 HG22 sing N N 164 VAL CG2 HG23 sing N N 165 VAL OXT HXT sing N N 166 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 'IODIDE ION' IOD 5 METHANOL MOH 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1W5U _pdbx_initial_refinement_model.details 'PDB ENTRY 1W5U' #