HEADER CELL CYCLE 08-JAN-10 3LBJ TITLE STRUCTURE OF HUMAN MDMX PROTEIN IN COMPLEX WITH A SMALL MOLECULE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MDM4; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: P53 BINDING DOMAIN; COMPND 5 SYNONYM: P53-BINDING PROTEIN MDM4, MDM2-LIKE P53-BINDING PROTEIN, COMPND 6 PROTEIN MDMX, DOUBLE MINUTE 4 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDM4, MDMX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-46EK/LIC KEYWDS MDMX, MDM2, P53, INHIBITOR, ALTERNATIVE SPLICING, NUCLEUS, KEYWDS 2 POLYMORPHISM, ZINC-FINGER, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR G.M.POPOWICZ,A.CZARNA,S.WOLF,T.A.HOLAK REVDAT 4 01-NOV-23 3LBJ 1 REMARK SEQADV REVDAT 3 17-OCT-18 3LBJ 1 JRNL REVDAT 2 01-NOV-17 3LBJ 1 REMARK REVDAT 1 16-MAR-10 3LBJ 0 JRNL AUTH G.M.POPOWICZ,A.CZARNA,S.WOLF,K.WANG,W.WANG,A.DOMLING, JRNL AUTH 2 T.A.HOLAK JRNL TITL STRUCTURES OF LOW MOLECULAR WEIGHT INHIBITORS BOUND TO MDMX JRNL TITL 2 AND MDM2 REVEAL NEW APPROACHES FOR P53-MDMX/MDM2 ANTAGONIST JRNL TITL 3 DRUG DISCOVERY JRNL REF CELL CYCLE V. 9 1104 2010 JRNL REFN ESSN 1551-4005 JRNL PMID 20237429 JRNL DOI 10.4161/CC.9.6.10956 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 3 NUMBER OF REFLECTIONS : 11482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.1500 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.1970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 773 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 522 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1049 ; 2.455 ; 2.131 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1204 ; 4.523 ; 3.018 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 82 ; 7.103 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 29 ;46.357 ;25.172 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 127 ;15.306 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;15.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 101 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 810 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 124 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 411 ; 0.985 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 168 ; 0.608 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 658 ; 1.810 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 362 ; 2.717 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 391 ; 4.089 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1295 ; 1.616 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 113 ; 3.505 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1273 ; 1.401 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MONOCHROMATOR, MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 22.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.15200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3DAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA/K-TARTRATE, 0.1M TRI-SODIUM REMARK 280 -CITRATE, 2M AMMONIUM SULFATE, PH 5.6, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.48500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.48500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 40.48500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 40.48500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 40.48500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 40.48500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 40.48500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 40.48500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 40.48500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 40.48500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 40.48500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 40.48500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 40.48500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 40.48500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 40.48500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 40.48500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 40.48500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 40.48500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 40.48500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 40.48500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 40.48500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 40.48500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 40.48500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C25 WW8 E 112 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 E 113 LIES ON A SPECIAL POSITION. REMARK 375 O4 SO4 E 113 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 15 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 150 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 22 REMARK 465 GLN E 23 REMARK 465 ILE E 24 REMARK 465 THR E 108 REMARK 465 LEU E 109 REMARK 465 ALA E 110 REMARK 465 THR E 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN E 43 CG CD OE1 NE2 REMARK 470 ARG E 87 CZ NH1 NH2 REMARK 470 LYS E 104 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG E 28 O HOH E 138 1.89 REMARK 500 O HOH E 141 O HOH E 144 1.97 REMARK 500 CE MET E 61 O HOH E 136 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C6 WW8 E 112 C26 WW8 E 112 15555 0.37 REMARK 500 N12 WW8 E 112 C13 WW8 E 112 15555 0.47 REMARK 500 C5 WW8 E 112 N36 WW8 E 112 15555 0.48 REMARK 500 C14 WW8 E 112 C23 WW8 E 112 15555 0.77 REMARK 500 C7 WW8 E 112 C27 WW8 E 112 15555 0.92 REMARK 500 N8 WW8 E 112 C33 WW8 E 112 15555 1.05 REMARK 500 C4 WW8 E 112 C35 WW8 E 112 15555 1.09 REMARK 500 C41 WW8 E 112 C41 WW8 E 112 15555 1.09 REMARK 500 C5 WW8 E 112 C37 WW8 E 112 15555 1.17 REMARK 500 C14 WW8 E 112 C24 WW8 E 112 15555 1.19 REMARK 500 C6 WW8 E 112 C25 WW8 E 112 15555 1.24 REMARK 500 C7 WW8 E 112 C26 WW8 E 112 15555 1.24 REMARK 500 C13 WW8 E 112 C13 WW8 E 112 15555 1.28 REMARK 500 C13 WW8 E 112 C24 WW8 E 112 15555 1.33 REMARK 500 C6 WW8 E 112 N36 WW8 E 112 15555 1.34 REMARK 500 C4 WW8 E 112 N36 WW8 E 112 15555 1.35 REMARK 500 C40 WW8 E 112 C43 WW8 E 112 15555 1.36 REMARK 500 N8 WW8 E 112 C28 WW8 E 112 15555 1.36 REMARK 500 N15 WW8 E 112 C24 WW8 E 112 15555 1.36 REMARK 500 C1 WW8 E 112 N34 WW8 E 112 15555 1.40 REMARK 500 C2 WW8 E 112 C35 WW8 E 112 15555 1.43 REMARK 500 C9 WW8 E 112 C9 WW8 E 112 15555 1.45 REMARK 500 C9 WW8 E 112 C25 WW8 E 112 15555 1.49 REMARK 500 C25 WW8 E 112 C26 WW8 E 112 15555 1.50 REMARK 500 C1 WW8 E 112 C27 WW8 E 112 15555 1.51 REMARK 500 C5 WW8 E 112 C26 WW8 E 112 15555 1.53 REMARK 500 C2 WW8 E 112 N34 WW8 E 112 15555 1.61 REMARK 500 N12 WW8 E 112 N12 WW8 E 112 15555 1.64 REMARK 500 O HOH E 186 O HOH E 186 16555 1.68 REMARK 500 N15 WW8 E 112 C23 WW8 E 112 15555 1.69 REMARK 500 C41 WW8 E 112 C43 WW8 E 112 15555 1.69 REMARK 500 C5 WW8 E 112 C35 WW8 E 112 15555 1.71 REMARK 500 C7 WW8 E 112 C28 WW8 E 112 15555 1.72 REMARK 500 N8 WW8 E 112 C27 WW8 E 112 15555 1.72 REMARK 500 C6 WW8 E 112 C27 WW8 E 112 15555 1.73 REMARK 500 C10 WW8 E 112 C13 WW8 E 112 15555 1.75 REMARK 500 O HOH E 160 O HOH E 160 16555 1.76 REMARK 500 C41 WW8 E 112 CL42 WW8 E 112 15555 1.82 REMARK 500 C14 WW8 E 112 C14 WW8 E 112 15555 1.89 REMARK 500 C9 WW8 E 112 C33 WW8 E 112 15555 1.91 REMARK 500 C7 WW8 E 112 N34 WW8 E 112 15555 1.93 REMARK 500 C16 WW8 E 112 C24 WW8 E 112 15555 1.93 REMARK 500 C39 WW8 E 112 C44 WW8 E 112 15555 1.95 REMARK 500 N12 WW8 E 112 C14 WW8 E 112 15555 1.95 REMARK 500 C40 WW8 E 112 C41 WW8 E 112 15555 1.98 REMARK 500 O HOH E 120 O HOH E 208 20555 1.98 REMARK 500 C13 WW8 E 112 C23 WW8 E 112 15555 2.04 REMARK 500 C4 WW8 E 112 C37 WW8 E 112 15555 2.06 REMARK 500 N8 WW8 E 112 C26 WW8 E 112 15555 2.06 REMARK 500 C40 WW8 E 112 C44 WW8 E 112 15555 2.08 REMARK 500 REMARK 500 THIS ENTRY HAS 55 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG E 87 CG - CD - NE ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP E 94 74.75 -150.49 REMARK 500 PRO E 95 34.61 -88.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN E 26 VAL E 27 142.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WW8 E 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WW8 E 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 113 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DAB RELATED DB: PDB REMARK 900 THE SAME DOMAIN OF HUMAN MDMX BOUND TO TRANSACTIVATION DOMAIN OF REMARK 900 P53. REMARK 900 RELATED ID: 3LBK RELATED DB: PDB REMARK 900 RELATED ID: 3LBL RELATED DB: PDB DBREF 3LBJ E 23 111 UNP O15151 MDM4_HUMAN 23 111 SEQADV 3LBJ MET E 22 UNP O15151 EXPRESSION TAG SEQRES 1 E 90 MET GLN ILE ASN GLN VAL ARG PRO LYS LEU PRO LEU LEU SEQRES 2 E 90 LYS ILE LEU HIS ALA ALA GLY ALA GLN GLY GLU MET PHE SEQRES 3 E 90 THR VAL LYS GLU VAL MET HIS TYR LEU GLY GLN TYR ILE SEQRES 4 E 90 MET VAL LYS GLN LEU TYR ASP GLN GLN GLU GLN HIS MET SEQRES 5 E 90 VAL TYR CYS GLY GLY ASP LEU LEU GLY GLU LEU LEU GLY SEQRES 6 E 90 ARG GLN SER PHE SER VAL LYS ASP PRO SER PRO LEU TYR SEQRES 7 E 90 ASP MET LEU ARG LYS ASN LEU VAL THR LEU ALA THR HET WW8 E 1 44 HET WW8 E 112 44 HET SO4 E 113 5 HETNAM WW8 N-[(3S)-1-({6-CHLORO-3-[1-(4-CHLOROBENZYL)-4-PHENYL-1H- HETNAM 2 WW8 IMIDAZOL-5-YL]-1H-INDOL-2-YL}CARBONYL)PYRROLIDIN-3- HETNAM 3 WW8 YL]-N,N',N'-TRIMETHYLPROPANE-1,3-DIAMINE HETNAM SO4 SULFATE ION FORMUL 2 WW8 2(C35 H38 CL2 N6 O) FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *113(H2 O) HELIX 1 1 LYS E 30 ALA E 40 1 11 HELIX 2 2 THR E 48 LYS E 63 1 16 HELIX 3 3 ASP E 79 GLY E 86 1 8 HELIX 4 4 PRO E 97 ASN E 105 1 9 SHEET 1 A 2 ARG E 28 PRO E 29 0 SHEET 2 A 2 LEU E 106 VAL E 107 -1 O VAL E 107 N ARG E 28 SHEET 1 B 3 TYR E 66 ASP E 67 0 SHEET 2 B 3 GLU E 70 TYR E 75 -1 O MET E 73 N ASP E 67 SHEET 3 B 3 SER E 89 SER E 91 -1 O PHE E 90 N VAL E 74 SITE 1 AC1 16 HOH E 21 MET E 53 HIS E 54 GLY E 57 SITE 2 AC1 16 ILE E 60 TYR E 66 GLN E 71 VAL E 92 SITE 3 AC1 16 LYS E 93 ASP E 94 PRO E 95 LEU E 98 SITE 4 AC1 16 TYR E 99 HOH E 161 HOH E 173 HOH E 211 SITE 1 AC2 7 VAL E 27 VAL E 49 TYR E 99 LEU E 102 SITE 2 AC2 7 ARG E 103 HOH E 125 HOH E 206 SITE 1 AC3 3 HOH E 15 GLN E 68 HOH E 168 CRYST1 80.970 80.970 80.970 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012350 0.00000