HEADER ONCOPROTEIN 08-JAN-10 3LBN TITLE RAS SOAKED IN MAGNESIUM ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-166; COMPND 5 SYNONYM: TRANSFORMING PROTEIN P21, P21RAS, H-RAS-1, C-H-RAS, HA-RAS, COMPND 6 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ONCOPROTEIN, PROTEIN-NUCLEOTIDE COMPLEX, GTP-BINDING, ACETYLATION, KEYWDS 2 CELL MEMBRANE, DISEASE MUTATION, GOLGI APPARATUS, LIPOPROTEIN, KEYWDS 3 MEMBRANE, METHYLATION, NUCLEOTIDE-BINDING, PALMITATE, PRENYLATION, KEYWDS 4 PROTO-ONCOGENE, S-NITROSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR G.HOLZAPFEL,G.BUHRMAN,C.MATTOS REVDAT 3 06-SEP-23 3LBN 1 REMARK LINK REVDAT 2 12-MAY-10 3LBN 1 JRNL REVDAT 1 02-MAR-10 3LBN 0 JRNL AUTH G.BUHRMAN,G.HOLZAPFEL,S.FETICS,C.MATTOS JRNL TITL ALLOSTERIC MODULATION OF RAS POSITIONS Q61 FOR A DIRECT ROLE JRNL TITL 2 IN CATALYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 4931 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20194776 JRNL DOI 10.1073/PNAS.0912226107 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.4_6) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 16015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.3308 - 4.2560 0.94 1281 142 0.1843 0.2277 REMARK 3 2 4.2560 - 3.3806 0.95 1253 140 0.1657 0.1920 REMARK 3 3 3.3806 - 2.9540 0.97 1253 139 0.1632 0.1902 REMARK 3 4 2.9540 - 2.6843 0.96 1256 141 0.1722 0.2238 REMARK 3 5 2.6843 - 2.4921 0.96 1234 137 0.1671 0.2087 REMARK 3 6 2.4921 - 2.3453 0.96 1230 136 0.1631 0.2249 REMARK 3 7 2.3453 - 2.2279 0.94 1215 137 0.1695 0.1975 REMARK 3 8 2.2279 - 2.1309 0.93 1195 130 0.1865 0.2702 REMARK 3 9 2.1309 - 2.0489 0.93 1194 133 0.1875 0.2589 REMARK 3 10 2.0489 - 1.9783 0.90 1160 128 0.1986 0.2345 REMARK 3 11 1.9783 - 1.9164 0.88 1106 131 0.2237 0.3033 REMARK 3 12 1.9164 - 1.8620 0.81 1025 119 0.2677 0.3090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 60.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1454 REMARK 3 ANGLE : 1.025 1979 REMARK 3 CHIRALITY : 0.064 214 REMARK 3 PLANARITY : 0.003 259 REMARK 3 DIHEDRAL : 18.861 542 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16015 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.862 REMARK 200 RESOLUTION RANGE LOW (A) : 26.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3K8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM CALCIUM ACETATE, 20 % PEG 3350, REMARK 280 0.05% N-OCTYLGLUCOPYRANOSIDE, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.25100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.54833 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.00167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.25100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.54833 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.00167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.25100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.54833 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.00167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.25100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.54833 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 45.00167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.25100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.54833 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.00167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.25100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.54833 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.00167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.09665 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 90.00333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.09665 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 90.00333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.09665 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 90.00333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.09665 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 90.00333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.09665 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 90.00333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.09665 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 90.00333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 44.25100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 76.64498 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -44.25100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 76.64498 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 169 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 170 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 200 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 280 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 288 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 309 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 32 O HOH A 295 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 37 114.35 -171.99 REMARK 500 ASP A 105 43.04 37.16 REMARK 500 LYS A 117 31.50 70.69 REMARK 500 ARG A 149 -6.46 81.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 168 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 78.2 REMARK 620 3 HOH A 202 O 90.9 83.9 REMARK 620 4 HOH A 203 O 90.8 94.0 177.1 REMARK 620 5 GNP A 528 O2B 95.9 169.2 87.1 95.2 REMARK 620 6 GNP A 528 O2G 169.4 91.3 89.7 88.3 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 167 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 28 O REMARK 620 2 ASP A 30 OD1 80.9 REMARK 620 3 HOH A 248 O 83.4 93.5 REMARK 620 4 HOH A 281 O 159.6 79.0 94.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 169 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 246 O REMARK 620 2 HOH A 259 O 85.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 170 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 286 O REMARK 620 2 HOH A 287 O 80.6 REMARK 620 3 HOH A 309 O 86.1 84.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 528 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 170 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K8Y RELATED DB: PDB REMARK 900 WILD-TYPE RAS HIGH RESOLUTION REMARK 900 RELATED ID: 3K9N RELATED DB: PDB REMARK 900 Y32F RAS MUTANT REMARK 900 RELATED ID: 3LBH RELATED DB: PDB REMARK 900 CALCIUM ACETATE CONTROL SOAK REMARK 900 RELATED ID: 3LBI RELATED DB: PDB REMARK 900 CALCIUM ACETATE BACK SOAK DBREF 3LBN A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET GNP A 528 32 HET CA A 167 1 HET MG A 168 1 HET MG A 169 1 HET MG A 170 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 CA CA 2+ FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *110(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 ALA A 66 5 6 HELIX 3 3 MET A 67 GLY A 75 1 9 HELIX 4 4 ASN A 86 LYS A 104 1 19 HELIX 5 5 GLU A 126 GLY A 138 1 13 HELIX 6 6 GLY A 151 ARG A 164 1 14 SHEET 1 A 6 GLU A 37 ILE A 46 0 SHEET 2 A 6 GLU A 49 THR A 58 -1 O ILE A 55 N TYR A 40 SHEET 3 A 6 THR A 2 VAL A 9 1 N TYR A 4 O LEU A 52 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 168 1555 1555 2.17 LINK O PHE A 28 CA CA A 167 1555 1555 2.44 LINK OD1 ASP A 30 CA CA A 167 1555 1555 2.42 LINK OG1 THR A 35 MG MG A 168 1555 1555 2.24 LINK CA CA A 167 O HOH A 248 1555 1555 2.58 LINK CA CA A 167 O HOH A 281 1555 1555 2.50 LINK MG MG A 168 O HOH A 202 1555 1555 2.33 LINK MG MG A 168 O HOH A 203 1555 1555 2.13 LINK MG MG A 168 O2B GNP A 528 1555 1555 2.13 LINK MG MG A 168 O2G GNP A 528 1555 1555 2.17 LINK MG MG A 169 O HOH A 246 1555 1555 2.17 LINK MG MG A 169 O HOH A 259 1555 1555 2.21 LINK MG MG A 170 O HOH A 286 1555 1555 2.30 LINK MG MG A 170 O HOH A 287 1555 1555 2.32 LINK MG MG A 170 O HOH A 309 1555 1555 2.32 SITE 1 AC1 31 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 31 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 31 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 31 PRO A 34 THR A 35 GLY A 60 ASN A 116 SITE 5 AC1 31 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 6 AC1 31 ALA A 146 LYS A 147 MG A 168 HOH A 202 SITE 7 AC1 31 HOH A 203 HOH A 210 HOH A 222 HOH A 224 SITE 8 AC1 31 HOH A 231 HOH A 292 HOH A 295 SITE 1 AC2 6 PHE A 28 ASP A 30 GLU A 31 ASP A 33 SITE 2 AC2 6 HOH A 248 HOH A 281 SITE 1 AC3 5 SER A 17 THR A 35 HOH A 202 HOH A 203 SITE 2 AC3 5 GNP A 528 SITE 1 AC4 2 HOH A 246 HOH A 259 SITE 1 AC5 3 HOH A 286 HOH A 287 HOH A 309 CRYST1 88.502 88.502 135.005 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011299 0.006524 0.000000 0.00000 SCALE2 0.000000 0.013047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007407 0.00000