HEADER TRANSFERASE 13-JAN-10 3LDF TITLE CRYSTAL STRUCTURE OF SMU.776, A PUTATIVE METHYLTRANSFERASE COMPLEXED TITLE 2 WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN SMU.776; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 210007; SOURCE 4 STRAIN: UA159; SOURCE 5 GENE: SMU_776; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SMU.776, YWBD, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.-T.WANG,J.NAN,X.-D.SU REVDAT 2 01-NOV-23 3LDF 1 REMARK REVDAT 1 19-JAN-11 3LDF 0 JRNL AUTH K.-T.WANG,J.NAN,X.-D.SU JRNL TITL CRYSTAL STRUCTURE OF SMU.776 COMPLEXED WITH SAH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 20503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1113 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1020 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3048 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3149 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4254 ; 1.778 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 7.077 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;38.074 ;24.248 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;16.587 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;20.032 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 468 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2379 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1891 ; 0.927 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3036 ; 1.583 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1258 ; 2.712 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1217 ; 4.101 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3490 10.0240 24.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.1910 T22: 0.4514 REMARK 3 T33: 0.1150 T12: -0.0794 REMARK 3 T13: 0.0001 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 5.6769 L22: 7.0601 REMARK 3 L33: 8.3287 L12: 1.1350 REMARK 3 L13: 0.2550 L23: 2.5166 REMARK 3 S TENSOR REMARK 3 S11: 0.3669 S12: -0.7717 S13: 0.1827 REMARK 3 S21: 0.7989 S22: -0.3616 S23: 0.2584 REMARK 3 S31: -0.2080 S32: -0.5495 S33: -0.0054 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8990 4.6040 2.1090 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: 0.2412 REMARK 3 T33: 0.1582 T12: -0.0119 REMARK 3 T13: -0.0564 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 3.7938 L22: 0.8591 REMARK 3 L33: 1.2918 L12: -0.9687 REMARK 3 L13: -0.5566 L23: 0.5628 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: 0.3099 S13: -0.0698 REMARK 3 S21: -0.0249 S22: -0.1312 S23: 0.0881 REMARK 3 S31: -0.0400 S32: -0.2515 S33: 0.0775 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7570 -11.5890 5.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.0857 REMARK 3 T33: 0.1133 T12: -0.0186 REMARK 3 T13: -0.0274 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.2087 L22: 2.0039 REMARK 3 L33: 1.3086 L12: -0.6561 REMARK 3 L13: -0.1907 L23: 0.0235 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.0288 S13: -0.1443 REMARK 3 S21: 0.1693 S22: -0.1186 S23: 0.0323 REMARK 3 S31: 0.2399 S32: 0.0027 S33: 0.1504 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 A 385 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1010 -1.9960 21.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.1782 REMARK 3 T33: 0.0971 T12: -0.0359 REMARK 3 T13: -0.0363 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.0254 L22: 3.2371 REMARK 3 L33: 2.0373 L12: -1.5240 REMARK 3 L13: 1.2247 L23: -0.5738 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: -0.3736 S13: -0.1611 REMARK 3 S21: 0.6803 S22: 0.0735 S23: 0.1645 REMARK 3 S31: 0.1663 S32: -0.1546 S33: -0.0158 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 56.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 2.250 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03990 REMARK 200 FOR THE DATA SET : 10.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2B78 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.1M NA CACODYLATE REMARK 280 PH6.5, 0.2M MGAC2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.84200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.41400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.84200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.41400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 631 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 156 REMARK 465 GLY A 157 REMARK 465 ILE A 158 REMARK 465 ASP A 159 REMARK 465 LYS A 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 44 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 55 -118.43 48.83 REMARK 500 GLN A 102 -131.20 50.84 REMARK 500 TYR A 222 -91.59 66.34 REMARK 500 MET A 270 143.18 -179.53 REMARK 500 ASP A 292 75.10 -151.13 REMARK 500 GLN A 361 -153.91 -133.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 28 LEU A 29 -144.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B78 RELATED DB: PDB REMARK 900 APO STRUCTURE DBREF 3LDF A 1 385 UNP Q8DUW5 Q8DUW5_STRMU 1 385 SEQRES 1 A 385 MET ILE LYS LEU MET VAL GLY SER PHE ALA GLU LYS LYS SEQRES 2 A 385 LEU LYS ARG GLY VAL GLN LEU LEU SER SER ARG ASP TYR SEQRES 3 A 385 PRO ASN LEU ASN LEU ASP ASN GLN VAL VAL GLN LEU TYR SEQRES 4 A 385 SER ASP ALA ASP ILE PHE LEU GLY THR ALA TYR LEU SER SEQRES 5 A 385 LYS GLN ASN LYS GLY VAL GLY TRP LEU ILE SER PRO LYS SEQRES 6 A 385 LYS VAL SER LEU ASN VAL THR TYR PHE ILE LYS LEU PHE SEQRES 7 A 385 GLN TRP SER LYS ASP LYS ARG LYS ASN PHE ALA HIS SER SEQRES 8 A 385 LYS LEU THR THR ALA TYR ARG LEU PHE ASN GLN ASP GLY SEQRES 9 A 385 ASP SER PHE GLY GLY VAL THR ILE ASP CYS TYR GLY ASP SEQRES 10 A 385 PHE VAL LEU PHE SER TRP TYR ASN SER PHE VAL TYR GLN SEQRES 11 A 385 ILE ARG ASP GLU ILE VAL ALA ALA PHE ARG GLN VAL TYR SEQRES 12 A 385 PRO ASN PHE LEU GLY ALA TYR GLU LYS ILE ARG PHE LYS SEQRES 13 A 385 GLY ILE ASP ASN VAL SER ALA HIS LEU TYR GLY GLN GLU SEQRES 14 A 385 ALA PRO GLU GLN PHE LEU ILE LEU GLU ASN GLY ILE SER SEQRES 15 A 385 TYR ASN VAL PHE LEU ASN ASP GLY LEU MET THR GLY ILE SEQRES 16 A 385 PHE LEU ASP GLN ARG GLN VAL ARG ASN GLU LEU ILE ASN SEQRES 17 A 385 GLY SER ALA ALA GLY LYS THR VAL LEU ASN LEU PHE SER SEQRES 18 A 385 TYR THR ALA ALA PHE SER VAL ALA ALA ALA MET GLY GLY SEQRES 19 A 385 ALA MET ALA THR THR SER VAL ASP LEU ALA LYS ARG SER SEQRES 20 A 385 ARG ALA LEU SER LEU ALA HIS PHE GLU ALA ASN HIS LEU SEQRES 21 A 385 ASP MET ALA ASN HIS GLN LEU VAL VAL MET ASP VAL PHE SEQRES 22 A 385 ASP TYR PHE LYS TYR ALA ARG ARG HIS HIS LEU THR TYR SEQRES 23 A 385 ASP ILE ILE ILE ILE ASP PRO PRO SER PHE ALA ARG ASN SEQRES 24 A 385 LYS LYS GLU VAL PHE SER VAL SER LYS ASP TYR HIS LYS SEQRES 25 A 385 LEU ILE ARG GLN GLY LEU GLU ILE LEU SER GLU ASN GLY SEQRES 26 A 385 LEU ILE ILE ALA SER THR ASN ALA ALA ASN MET THR VAL SEQRES 27 A 385 SER GLN PHE LYS LYS GLN ILE GLU LYS GLY PHE GLY LYS SEQRES 28 A 385 GLN LYS HIS THR TYR LEU ASP LEU GLN GLN LEU PRO SER SEQRES 29 A 385 ASP PHE ALA VAL ASN VAL GLN ASP GLU SER SER ASN TYR SEQRES 30 A 385 LEU LYS VAL PHE THR ILE LYS VAL HET SAH A 401 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 HOH *205(H2 O) HELIX 1 1 GLY A 7 GLY A 17 1 11 HELIX 2 2 ARG A 24 TYR A 26 5 3 HELIX 3 3 ASN A 70 LYS A 84 1 15 HELIX 4 4 ARG A 85 SER A 91 1 7 HELIX 5 5 ASP A 103 SER A 106 5 4 HELIX 6 6 ASN A 125 ILE A 131 1 7 HELIX 7 7 ILE A 131 TYR A 143 1 13 HELIX 8 8 PHE A 196 ASP A 198 5 3 HELIX 9 9 GLN A 199 ASN A 208 1 10 HELIX 10 10 ALA A 224 GLY A 233 1 10 HELIX 11 11 ARG A 246 ASN A 258 1 13 HELIX 12 12 ASP A 271 HIS A 282 1 12 HELIX 13 13 VAL A 306 ILE A 320 1 15 HELIX 14 14 THR A 337 GLY A 350 1 14 HELIX 15 15 ASP A 372 ASN A 376 5 5 SHEET 1 A 5 ILE A 2 MET A 5 0 SHEET 2 A 5 GLN A 34 TYR A 39 1 O TYR A 39 N LEU A 4 SHEET 3 A 5 PHE A 45 GLN A 54 -1 O LEU A 46 N LEU A 38 SHEET 4 A 5 GLY A 57 SER A 63 -1 O GLY A 57 N GLN A 54 SHEET 5 A 5 LEU A 20 SER A 22 -1 N LEU A 21 O VAL A 58 SHEET 1 B 5 ALA A 96 ASN A 101 0 SHEET 2 B 5 VAL A 110 TYR A 115 -1 O CYS A 114 N TYR A 97 SHEET 3 B 5 PHE A 118 TRP A 123 -1 O PHE A 118 N TYR A 115 SHEET 4 B 5 GLY A 148 ILE A 153 1 O LYS A 152 N PHE A 121 SHEET 5 B 5 SER A 162 GLY A 167 -1 O LEU A 165 N ALA A 149 SHEET 1 C 2 PHE A 174 GLU A 178 0 SHEET 2 C 2 ILE A 181 VAL A 185 -1 O VAL A 185 N PHE A 174 SHEET 1 D 7 HIS A 265 VAL A 269 0 SHEET 2 D 7 ALA A 237 ASP A 242 1 N SER A 240 O VAL A 268 SHEET 3 D 7 THR A 215 LEU A 219 1 N ASN A 218 O THR A 239 SHEET 4 D 7 TYR A 286 ILE A 291 1 O ILE A 290 N LEU A 217 SHEET 5 D 7 LEU A 321 THR A 331 1 O ILE A 328 N ILE A 291 SHEET 6 D 7 LYS A 379 LYS A 384 -1 O PHE A 381 N ALA A 329 SHEET 7 D 7 THR A 355 GLN A 360 -1 N THR A 355 O LYS A 384 SHEET 1 E 2 PHE A 296 ARG A 298 0 SHEET 2 E 2 VAL A 303 SER A 305 -1 O PHE A 304 N ALA A 297 SITE 1 AC1 19 PHE A 220 SER A 221 TYR A 222 PHE A 226 SITE 2 AC1 19 ASP A 242 LEU A 243 ALA A 244 ARG A 246 SITE 3 AC1 19 MET A 270 ASP A 271 VAL A 272 ASP A 292 SITE 4 AC1 19 HOH A 514 HOH A 544 HOH A 578 HOH A 581 SITE 5 AC1 19 HOH A 597 HOH A 603 HOH A 628 CRYST1 165.684 50.828 59.569 90.00 107.14 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006036 0.000000 0.001862 0.00000 SCALE2 0.000000 0.019674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017568 0.00000