HEADER IMMUNE SYSTEM 15-JAN-10 3LF6 TITLE CRYSTAL STRUCTURE OF HIV EPITOPE-SCAFFOLD 4E10_1XIZA_S0_001_N COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHOTRANSFERASE SYSTEM; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4E10_1XIZA_S0_001_N (T117), MANNITOL/FRUCTOSE-SPECIFIC IIA COMPND 5 DOMAIN CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET29 KEYWDS EPITOPE-SCAFFOLD, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.A.HOLMES REVDAT 2 06-SEP-23 3LF6 1 REMARK REVDAT 1 22-SEP-10 3LF6 0 JRNL AUTH B.E.CORREIA,Y.E.BAN,M.A.HOLMES,H.XU,K.ELLINGSON,Z.KRAFT, JRNL AUTH 2 C.CARRICO,E.BONI,D.N.SATHER,C.ZENOBIA,K.Y.BURKE, JRNL AUTH 3 T.BRADLEY-HEWITT,J.F.BRUHN-JOHANNSEN,O.KALYUZHNIY,D.BAKER, JRNL AUTH 4 R.K.STRONG,L.STAMATATOS,W.R.SCHIEF JRNL TITL COMPUTATIONAL DESIGN OF EPITOPE-SCAFFOLDS ALLOWS INDUCTION JRNL TITL 2 OF ANTIBODIES SPECIFIC FOR A POORLY IMMUNOGENIC HIV VACCINE JRNL TITL 3 EPITOPE. JRNL REF STRUCTURE V. 18 1116 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20826338 JRNL DOI 10.1016/J.STR.2010.06.010 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 26499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1454 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.4940 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.5010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2448 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2577 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1679 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3532 ; 1.056 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4100 ; 0.743 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 5.156 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;37.211 ;24.173 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 403 ;12.843 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2891 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 520 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 588 ; 0.205 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1918 ; 0.208 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1275 ; 0.186 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1275 ; 0.087 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 360 ; 0.218 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.053 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 10 ; 0.354 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.266 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1618 ; 0.763 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 623 ; 0.179 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2586 ; 1.173 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1084 ; 1.686 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 939 ; 2.345 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5560 -11.4210 17.2740 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: -0.0670 REMARK 3 T33: -0.0881 T12: 0.0192 REMARK 3 T13: 0.0167 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.0572 L22: 1.6844 REMARK 3 L33: 2.4784 L12: -0.1907 REMARK 3 L13: 0.2211 L23: 0.6694 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.0353 S13: 0.1381 REMARK 3 S21: 0.1742 S22: -0.0998 S23: 0.2013 REMARK 3 S31: -0.0872 S32: -0.1608 S33: 0.1128 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0730 -11.1310 14.5220 REMARK 3 T TENSOR REMARK 3 T11: -0.0042 T22: -0.0527 REMARK 3 T33: -0.1206 T12: -0.0061 REMARK 3 T13: -0.0055 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.9197 L22: 1.8735 REMARK 3 L33: 2.1552 L12: 0.0819 REMARK 3 L13: -0.5534 L23: -0.5364 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.0856 S13: -0.0146 REMARK 3 S21: 0.0387 S22: -0.0663 S23: -0.0497 REMARK 3 S31: -0.0623 S32: 0.1913 S33: 0.0336 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2000 -0.3190 25.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: -0.1684 REMARK 3 T33: -0.1694 T12: -0.0313 REMARK 3 T13: -0.0278 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 3.5056 L22: 5.1981 REMARK 3 L33: 11.2959 L12: 0.2028 REMARK 3 L13: 0.0608 L23: -0.7377 REMARK 3 S TENSOR REMARK 3 S11: 0.1729 S12: 0.0255 S13: 0.2730 REMARK 3 S21: 0.0837 S22: -0.0310 S23: -0.1269 REMARK 3 S31: -0.6507 S32: 0.1335 S33: -0.1419 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 47 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2390 -4.7920 -9.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: -0.0584 REMARK 3 T33: -0.1701 T12: 0.0074 REMARK 3 T13: -0.0013 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 2.5769 L22: 2.4744 REMARK 3 L33: 1.9073 L12: -0.1127 REMARK 3 L13: -0.0859 L23: -0.0164 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.1300 S13: 0.0790 REMARK 3 S21: -0.1631 S22: 0.0043 S23: -0.1436 REMARK 3 S31: -0.2221 S32: 0.0647 S33: 0.0230 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 48 B 129 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6820 -0.8570 -0.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.0713 T22: -0.0530 REMARK 3 T33: -0.1625 T12: 0.0361 REMARK 3 T13: 0.0107 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.1679 L22: 2.4558 REMARK 3 L33: 1.4953 L12: 0.5708 REMARK 3 L13: -0.5692 L23: -0.7795 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.0046 S13: 0.2063 REMARK 3 S21: -0.0287 S22: -0.0634 S23: 0.1487 REMARK 3 S31: -0.3271 S32: 0.0086 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 130 B 160 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9800 -5.0730 3.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: -0.0193 REMARK 3 T33: -0.1376 T12: -0.0406 REMARK 3 T13: -0.0655 T23: 0.0678 REMARK 3 L TENSOR REMARK 3 L11: 4.3093 L22: 5.0432 REMARK 3 L33: 3.9162 L12: 0.9836 REMARK 3 L13: -1.1892 L23: 0.4210 REMARK 3 S TENSOR REMARK 3 S11: -0.0473 S12: -0.1622 S13: -0.0707 REMARK 3 S21: 0.1662 S22: -0.0555 S23: -0.4110 REMARK 3 S31: -0.0221 S32: 0.3190 S33: 0.1028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000057201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 107 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : RIGAKU VARIMAX HR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.430 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: COMPUTATIONALLY-DERIVED MODEL OF THE EPITOPE REMARK 200 -SCAFFOLD, BASED ON 1XIZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DI-AMMONIUM PHOSPHATE, TRIS, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.60550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.10950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.98750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.10950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.60550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.98750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 GLU A 161 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 GLU B 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 LYS A 79 NZ REMARK 470 ILE A 86 CD1 REMARK 470 LEU A 127 CD1 CD2 REMARK 470 GLN A 135 CD OE1 NE2 REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 GLN A 153 CD OE1 NE2 REMARK 470 HIS B 4 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 LYS B 33 CE NZ REMARK 470 GLN B 58 CD OE1 NE2 REMARK 470 LEU B 127 CD1 CD2 REMARK 470 GLU B 137 CG CD OE1 OE2 REMARK 470 ASP B 138 OD1 OD2 REMARK 470 SER B 160 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 48 32.77 -98.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 162 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LEF RELATED DB: PDB REMARK 900 RELATED ID: 3LF9 RELATED DB: PDB REMARK 900 RELATED ID: 3LG7 RELATED DB: PDB REMARK 900 RELATED ID: 3LH2 RELATED DB: PDB REMARK 900 RELATED ID: 3LHP RELATED DB: PDB DBREF 3LF6 A 1 161 PDB 3LF6 3LF6 1 161 DBREF 3LF6 B 1 161 PDB 3LF6 3LF6 1 161 SEQRES 1 A 161 HIS HIS HIS HIS HIS HIS ASN ALA MET GLN GLY ILE HIS SEQRES 2 A 161 PHE ARG ARG HIS TYR VAL ARG HIS LEU PRO LYS GLU VAL SEQRES 3 A 161 SER GLN ASN ASP ILE ILE LYS ALA LEU ALA SER PRO LEU SEQRES 4 A 161 ILE ASN ASP GLY MET VAL VAL SER ASP PHE ALA ASP HIS SEQRES 5 A 161 VAL ILE THR ARG GLU GLN ASN PHE PRO THR GLY LEU PRO SEQRES 6 A 161 VAL GLU PRO VAL GLY VAL ALA ILE PRO HIS THR ASP SER SEQRES 7 A 161 LYS TYR VAL ARG GLN ASN ALA ILE SER VAL GLY ILE LEU SEQRES 8 A 161 ALA GLU PRO VAL ASN PHE GLU ASP ALA GLY GLY GLU PRO SEQRES 9 A 161 ASP PRO VAL PRO VAL ARG VAL VAL PHE MET LEU ALA LEU SEQRES 10 A 161 GLY ASN TRP PHE ASP ILE THR ASN VAL LEU TRP TRP ILE SEQRES 11 A 161 MET ASP VAL ILE GLN ASP GLU ASP PHE MET GLN GLN LEU SEQRES 12 A 161 LEU VAL MET ASN ASP ASP GLU ILE TYR GLN SER ILE TYR SEQRES 13 A 161 THR ARG ILE SER GLU SEQRES 1 B 161 HIS HIS HIS HIS HIS HIS ASN ALA MET GLN GLY ILE HIS SEQRES 2 B 161 PHE ARG ARG HIS TYR VAL ARG HIS LEU PRO LYS GLU VAL SEQRES 3 B 161 SER GLN ASN ASP ILE ILE LYS ALA LEU ALA SER PRO LEU SEQRES 4 B 161 ILE ASN ASP GLY MET VAL VAL SER ASP PHE ALA ASP HIS SEQRES 5 B 161 VAL ILE THR ARG GLU GLN ASN PHE PRO THR GLY LEU PRO SEQRES 6 B 161 VAL GLU PRO VAL GLY VAL ALA ILE PRO HIS THR ASP SER SEQRES 7 B 161 LYS TYR VAL ARG GLN ASN ALA ILE SER VAL GLY ILE LEU SEQRES 8 B 161 ALA GLU PRO VAL ASN PHE GLU ASP ALA GLY GLY GLU PRO SEQRES 9 B 161 ASP PRO VAL PRO VAL ARG VAL VAL PHE MET LEU ALA LEU SEQRES 10 B 161 GLY ASN TRP PHE ASP ILE THR ASN VAL LEU TRP TRP ILE SEQRES 11 B 161 MET ASP VAL ILE GLN ASP GLU ASP PHE MET GLN GLN LEU SEQRES 12 B 161 LEU VAL MET ASN ASP ASP GLU ILE TYR GLN SER ILE TYR SEQRES 13 B 161 THR ARG ILE SER GLU HET PO4 A 162 5 HET PO4 A 163 5 HET PO4 B 162 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *262(H2 O) HELIX 1 1 ASN A 7 ILE A 12 1 6 HELIX 2 2 ARG A 15 HIS A 17 5 3 HELIX 3 3 SER A 27 ASP A 42 1 16 HELIX 4 4 ASP A 48 PHE A 60 1 13 HELIX 5 5 ASP A 77 VAL A 81 5 5 HELIX 6 6 ASN A 119 PHE A 121 5 3 HELIX 7 7 ASP A 122 GLN A 135 1 14 HELIX 8 8 ASP A 136 LEU A 143 1 8 HELIX 9 9 ASN A 147 SER A 160 1 14 HELIX 10 10 ASN B 7 ILE B 12 1 6 HELIX 11 11 ARG B 15 HIS B 17 5 3 HELIX 12 12 SER B 27 ASP B 42 1 16 HELIX 13 13 ASP B 48 PHE B 60 1 13 HELIX 14 14 ASP B 77 VAL B 81 5 5 HELIX 15 15 ASN B 119 PHE B 121 5 3 HELIX 16 16 ASP B 122 GLN B 135 1 14 HELIX 17 17 ASP B 136 LEU B 144 1 9 HELIX 18 18 ASN B 147 SER B 160 1 14 SHEET 1 A 5 VAL A 19 LEU A 22 0 SHEET 2 A 5 ALA A 85 PHE A 97 1 O ILE A 90 N LEU A 22 SHEET 3 A 5 VAL A 107 ALA A 116 -1 O ARG A 110 N LEU A 91 SHEET 4 A 5 GLY A 70 ALA A 72 1 N ALA A 72 O PHE A 113 SHEET 5 A 5 GLY A 63 LEU A 64 -1 N LEU A 64 O VAL A 71 SHEET 1 B 5 VAL B 19 LEU B 22 0 SHEET 2 B 5 ALA B 85 PHE B 97 1 O ILE B 90 N ARG B 20 SHEET 3 B 5 VAL B 107 ALA B 116 -1 O VAL B 107 N PHE B 97 SHEET 4 B 5 GLY B 70 ALA B 72 1 N GLY B 70 O ARG B 110 SHEET 5 B 5 GLY B 63 LEU B 64 -1 N LEU B 64 O VAL B 71 CISPEP 1 GLU A 67 PRO A 68 0 -2.63 CISPEP 2 GLU B 67 PRO B 68 0 4.59 SITE 1 AC1 3 HIS A 13 ARG A 15 HOH A 234 SITE 1 AC2 3 SER A 27 ASN A 29 ASP A 30 SITE 1 AC3 4 SER B 27 ASN B 29 ASP B 30 HOH B 206 CRYST1 49.211 81.975 94.219 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020321 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010614 0.00000