data_3LHL # _entry.id 3LHL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LHL RCSB RCSB057287 WWPDB D_1000057287 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-11305e _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LHL _pdbx_database_status.recvd_initial_deposition_date 2010-01-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Palani, K.' 1 ? 'Burley, S.K.' 2 0000-0002-2487-9713 'Swaminathan, S.' 3 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 4 ? # _citation.id primary _citation.title 'Crystal structure of a putative agmatinase from Clostridium difficile' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Palani, K.' 1 ? primary 'Burley, S.K.' 2 0000-0002-2487-9713 primary 'Swaminathan, S.' 3 ? # _cell.entry_id 3LHL _cell.length_a 77.350 _cell.length_b 77.350 _cell.length_c 166.118 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LHL _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative agmatinase' 32900.148 1 ? ? 'sequence database residues 17-292' ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 4 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 4 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 5 water nat water 18.015 166 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLNYEESNLIVFGVGFDGTTSNRPGARFASSS(MSE)RKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQ VLKEIYQETYKIVRDSKVPF(MSE)IGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIV GDNKIFQFGIRSGTKEEFKFATEEKHTY(MSE)EIGGIDTFENIVN(MSE)LNGKNIYLTIDLDVLDASVFPGTGTPEPG GVNYREFQEIFKIIKNSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIKEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLNYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQE TYKIVRDSKVPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRS GTKEEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNIN IVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIKEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-11305e # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 ASN n 1 5 TYR n 1 6 GLU n 1 7 GLU n 1 8 SER n 1 9 ASN n 1 10 LEU n 1 11 ILE n 1 12 VAL n 1 13 PHE n 1 14 GLY n 1 15 VAL n 1 16 GLY n 1 17 PHE n 1 18 ASP n 1 19 GLY n 1 20 THR n 1 21 THR n 1 22 SER n 1 23 ASN n 1 24 ARG n 1 25 PRO n 1 26 GLY n 1 27 ALA n 1 28 ARG n 1 29 PHE n 1 30 ALA n 1 31 SER n 1 32 SER n 1 33 SER n 1 34 MSE n 1 35 ARG n 1 36 LYS n 1 37 GLU n 1 38 PHE n 1 39 TYR n 1 40 GLY n 1 41 LEU n 1 42 GLU n 1 43 THR n 1 44 TYR n 1 45 SER n 1 46 PRO n 1 47 PHE n 1 48 LEU n 1 49 ASP n 1 50 LEU n 1 51 ASP n 1 52 LEU n 1 53 GLU n 1 54 ASP n 1 55 TYR n 1 56 ASN n 1 57 ILE n 1 58 CYS n 1 59 ASP n 1 60 TYR n 1 61 GLY n 1 62 ASP n 1 63 LEU n 1 64 GLU n 1 65 ILE n 1 66 SER n 1 67 VAL n 1 68 GLY n 1 69 SER n 1 70 THR n 1 71 GLU n 1 72 GLN n 1 73 VAL n 1 74 LEU n 1 75 LYS n 1 76 GLU n 1 77 ILE n 1 78 TYR n 1 79 GLN n 1 80 GLU n 1 81 THR n 1 82 TYR n 1 83 LYS n 1 84 ILE n 1 85 VAL n 1 86 ARG n 1 87 ASP n 1 88 SER n 1 89 LYS n 1 90 VAL n 1 91 PRO n 1 92 PHE n 1 93 MSE n 1 94 ILE n 1 95 GLY n 1 96 GLY n 1 97 GLU n 1 98 HIS n 1 99 LEU n 1 100 VAL n 1 101 THR n 1 102 LEU n 1 103 PRO n 1 104 ALA n 1 105 PHE n 1 106 LYS n 1 107 ALA n 1 108 VAL n 1 109 HIS n 1 110 GLU n 1 111 LYS n 1 112 TYR n 1 113 ASN n 1 114 ASP n 1 115 ILE n 1 116 TYR n 1 117 VAL n 1 118 ILE n 1 119 HIS n 1 120 PHE n 1 121 ASP n 1 122 ALA n 1 123 HIS n 1 124 THR n 1 125 ASP n 1 126 LEU n 1 127 ARG n 1 128 GLU n 1 129 GLU n 1 130 TYR n 1 131 ASN n 1 132 ASN n 1 133 SER n 1 134 LYS n 1 135 ASN n 1 136 SER n 1 137 HIS n 1 138 ALA n 1 139 THR n 1 140 VAL n 1 141 ILE n 1 142 LYS n 1 143 ARG n 1 144 ILE n 1 145 TRP n 1 146 ASP n 1 147 ILE n 1 148 VAL n 1 149 GLY n 1 150 ASP n 1 151 ASN n 1 152 LYS n 1 153 ILE n 1 154 PHE n 1 155 GLN n 1 156 PHE n 1 157 GLY n 1 158 ILE n 1 159 ARG n 1 160 SER n 1 161 GLY n 1 162 THR n 1 163 LYS n 1 164 GLU n 1 165 GLU n 1 166 PHE n 1 167 LYS n 1 168 PHE n 1 169 ALA n 1 170 THR n 1 171 GLU n 1 172 GLU n 1 173 LYS n 1 174 HIS n 1 175 THR n 1 176 TYR n 1 177 MSE n 1 178 GLU n 1 179 ILE n 1 180 GLY n 1 181 GLY n 1 182 ILE n 1 183 ASP n 1 184 THR n 1 185 PHE n 1 186 GLU n 1 187 ASN n 1 188 ILE n 1 189 VAL n 1 190 ASN n 1 191 MSE n 1 192 LEU n 1 193 ASN n 1 194 GLY n 1 195 LYS n 1 196 ASN n 1 197 ILE n 1 198 TYR n 1 199 LEU n 1 200 THR n 1 201 ILE n 1 202 ASP n 1 203 LEU n 1 204 ASP n 1 205 VAL n 1 206 LEU n 1 207 ASP n 1 208 ALA n 1 209 SER n 1 210 VAL n 1 211 PHE n 1 212 PRO n 1 213 GLY n 1 214 THR n 1 215 GLY n 1 216 THR n 1 217 PRO n 1 218 GLU n 1 219 PRO n 1 220 GLY n 1 221 GLY n 1 222 VAL n 1 223 ASN n 1 224 TYR n 1 225 ARG n 1 226 GLU n 1 227 PHE n 1 228 GLN n 1 229 GLU n 1 230 ILE n 1 231 PHE n 1 232 LYS n 1 233 ILE n 1 234 ILE n 1 235 LYS n 1 236 ASN n 1 237 SER n 1 238 ASN n 1 239 ILE n 1 240 ASN n 1 241 ILE n 1 242 VAL n 1 243 GLY n 1 244 CYS n 1 245 ASP n 1 246 ILE n 1 247 VAL n 1 248 GLU n 1 249 LEU n 1 250 SER n 1 251 PRO n 1 252 ASP n 1 253 TYR n 1 254 ASP n 1 255 THR n 1 256 THR n 1 257 GLY n 1 258 VAL n 1 259 SER n 1 260 THR n 1 261 VAL n 1 262 ILE n 1 263 ALA n 1 264 CYS n 1 265 LYS n 1 266 ILE n 1 267 LEU n 1 268 ARG n 1 269 GLU n 1 270 LEU n 1 271 CYS n 1 272 LEU n 1 273 ILE n 1 274 ILE n 1 275 SER n 1 276 ASP n 1 277 LYS n 1 278 ILE n 1 279 LYS n 1 280 GLU n 1 281 GLY n 1 282 HIS n 1 283 HIS n 1 284 HIS n 1 285 HIS n 1 286 HIS n 1 287 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CD0891, speB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 630 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium difficile' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272563 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC - pSGX3 (BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q18A84_CLOD6 _struct_ref.pdbx_db_accession Q18A84 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYK IVRDSKVPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTK EEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNINIVG CDIVELSPDYDTTGVSTVIACKILRELCLIISDKIK ; _struct_ref.pdbx_align_begin 17 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LHL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 279 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q18A84 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 292 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 17 _struct_ref_seq.pdbx_auth_seq_align_end 292 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LHL MSE A 1 ? UNP Q18A84 ? ? 'expression tag' 14 1 1 3LHL SER A 2 ? UNP Q18A84 ? ? 'expression tag' 15 2 1 3LHL LEU A 3 ? UNP Q18A84 ? ? 'expression tag' 16 3 1 3LHL GLU A 280 ? UNP Q18A84 ? ? 'expression tag' 293 4 1 3LHL GLY A 281 ? UNP Q18A84 ? ? 'expression tag' 294 5 1 3LHL HIS A 282 ? UNP Q18A84 ? ? 'expression tag' 295 6 1 3LHL HIS A 283 ? UNP Q18A84 ? ? 'expression tag' 296 7 1 3LHL HIS A 284 ? UNP Q18A84 ? ? 'expression tag' 297 8 1 3LHL HIS A 285 ? UNP Q18A84 ? ? 'expression tag' 298 9 1 3LHL HIS A 286 ? UNP Q18A84 ? ? 'expression tag' 299 10 1 3LHL HIS A 287 ? UNP Q18A84 ? ? 'expression tag' 300 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LHL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.2M Ammonium dihydrogen Phosphate, 0.1M Tris, 50% MPD, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-11-07 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(III) CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 3LHL _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 38.68 _reflns.d_resolution_high 2.30 _reflns.number_obs 13323 _reflns.number_all 13877 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.4 _reflns.B_iso_Wilson_estimate 15.3 _reflns.pdbx_redundancy 37.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.232 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 37.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1335 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3LHL _refine.ls_number_reflns_obs 13323 _refine.ls_number_reflns_all 13877 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 119736.74 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.68 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 96.7 _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.238 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 656 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.4 _refine.aniso_B[1][1] -2.54 _refine.aniso_B[2][2] -2.54 _refine.aniso_B[3][3] 5.08 _refine.aniso_B[1][2] 0.61 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.373019 _refine.solvent_model_param_bsol 42.2779 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3LHL _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs 0.13 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.30 _refine_analyze.Luzzati_sigma_a_free 0.25 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2205 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 166 _refine_hist.number_atoms_total 2393 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 38.68 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.75 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details NONE _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_number ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work 2035 _refine_ls_shell.R_factor_R_work 0.196 _refine_ls_shell.percent_reflns_obs 96.3 _refine_ls_shell.R_factor_R_free 0.296 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1335 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 mpd.par mpd.top 'X-RAY DIFFRACTION' # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3LHL _struct.title 'Crystal structure of a putative agmatinase from Clostridium difficile' _struct.pdbx_descriptor 'Putative agmatinase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LHL _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Agmatinase, Protein Structure Initiative II(PSI II), NYSGXRC, 11305e, Structural Genomics, New York SGX Research Center for Structural Genomics, Manganese, Metal-binding, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 26 ? ARG A 28 ? GLY A 39 ARG A 41 5 ? 3 HELX_P HELX_P2 2 PHE A 29 ? TYR A 39 ? PHE A 42 TYR A 52 1 ? 11 HELX_P HELX_P3 3 GLU A 53 ? TYR A 55 ? GLU A 66 TYR A 68 5 ? 3 HELX_P HELX_P4 4 SER A 69 ? ASP A 87 ? SER A 82 ASP A 100 1 ? 19 HELX_P HELX_P5 5 GLU A 97 ? LEU A 99 ? GLU A 110 LEU A 112 5 ? 3 HELX_P HELX_P6 6 VAL A 100 ? TYR A 112 ? VAL A 113 TYR A 125 1 ? 13 HELX_P HELX_P7 7 THR A 139 ? GLY A 149 ? THR A 152 GLY A 162 1 ? 11 HELX_P HELX_P8 8 THR A 162 ? GLU A 171 ? THR A 175 GLU A 184 1 ? 10 HELX_P HELX_P9 9 THR A 184 ? LEU A 192 ? THR A 197 LEU A 205 1 ? 9 HELX_P HELX_P10 10 ASP A 204 ? LEU A 206 ? ASP A 217 LEU A 219 5 ? 3 HELX_P HELX_P11 11 ASN A 223 ? GLN A 228 ? ASN A 236 GLN A 241 1 ? 6 HELX_P HELX_P12 12 GLN A 228 ? ASN A 236 ? GLN A 241 ASN A 249 1 ? 9 HELX_P HELX_P13 13 SER A 250 ? ASP A 254 ? SER A 263 ASP A 267 5 ? 5 HELX_P HELX_P14 14 GLY A 257 ? LYS A 279 ? GLY A 270 LYS A 292 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A SER 33 C ? ? ? 1_555 A MSE 34 N ? ? A SER 46 A MSE 47 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 34 C ? ? ? 1_555 A ARG 35 N ? ? A MSE 47 A ARG 48 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A PHE 92 C ? ? ? 1_555 A MSE 93 N ? ? A PHE 105 A MSE 106 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 93 C ? ? ? 1_555 A ILE 94 N ? ? A MSE 106 A ILE 107 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A TYR 176 C ? ? ? 1_555 A MSE 177 N ? ? A TYR 189 A MSE 190 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? A MSE 177 C ? ? ? 1_555 A GLU 178 N ? ? A MSE 190 A GLU 191 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? A ASN 190 C ? ? ? 1_555 A MSE 191 N ? ? A ASN 203 A MSE 204 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? A MSE 191 C ? ? ? 1_555 A LEU 192 N ? ? A MSE 204 A LEU 205 1_555 ? ? ? ? ? ? ? 1.330 ? ? metalc1 metalc ? ? A HIS 98 ND1 ? ? ? 1_555 B MN . MN ? ? A HIS 111 A MN 301 1_555 ? ? ? ? ? ? ? 2.223 ? ? metalc2 metalc ? ? A ASP 121 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 134 A MN 301 1_555 ? ? ? ? ? ? ? 2.171 ? ? metalc3 metalc ? ? A ASP 121 OD1 ? ? ? 1_555 C MN . MN ? ? A ASP 134 A MN 302 1_555 ? ? ? ? ? ? ? 2.310 ? ? metalc4 metalc ? ? A HIS 123 ND1 ? ? ? 1_555 C MN . MN ? ? A HIS 136 A MN 302 1_555 ? ? ? ? ? ? ? 2.425 ? ? metalc5 metalc ? ? A ASP 125 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 138 A MN 301 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc6 metalc ? ? A ASP 202 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 215 A MN 301 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc7 metalc ? ? A ASP 202 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 215 A MN 302 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc8 metalc ? ? A ASP 204 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 217 A MN 302 1_555 ? ? ? ? ? ? ? 2.039 ? ? metalc9 metalc ? ? A ASP 204 OD1 ? ? ? 1_555 C MN . MN ? ? A ASP 217 A MN 302 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc10 metalc ? ? B MN . MN ? ? ? 1_555 D MN . MN ? ? A MN 301 A MN 303 1_555 ? ? ? ? ? ? ? 2.864 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 57 ? ASP A 62 ? ILE A 70 ASP A 75 A 2 LEU A 10 ? VAL A 15 ? LEU A 23 VAL A 28 A 3 VAL A 90 ? GLY A 95 ? VAL A 103 GLY A 108 A 4 ASN A 240 ? VAL A 247 ? ASN A 253 VAL A 260 A 5 ASN A 196 ? ASP A 202 ? ASN A 209 ASP A 215 A 6 ILE A 115 ? PHE A 120 ? ILE A 128 PHE A 133 A 7 ILE A 153 ? ILE A 158 ? ILE A 166 ILE A 171 A 8 TYR A 176 ? ILE A 179 ? TYR A 189 ILE A 192 B 1 TYR A 44 ? SER A 45 ? TYR A 57 SER A 58 B 2 LEU A 50 ? ASP A 51 ? LEU A 63 ASP A 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O CYS A 58 ? O CYS A 71 N VAL A 12 ? N VAL A 25 A 2 3 N ILE A 11 ? N ILE A 24 O PHE A 92 ? O PHE A 105 A 3 4 N MSE A 93 ? N MSE A 106 O CYS A 244 ? O CYS A 257 A 4 5 O ASN A 240 ? O ASN A 253 N ILE A 197 ? N ILE A 210 A 5 6 O ASN A 196 ? O ASN A 209 N TYR A 116 ? N TYR A 129 A 6 7 N HIS A 119 ? N HIS A 132 O PHE A 154 ? O PHE A 167 A 7 8 N GLN A 155 ? N GLN A 168 O TYR A 176 ? O TYR A 189 B 1 2 N SER A 45 ? N SER A 58 O LEU A 50 ? O LEU A 63 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 301 ? 6 'BINDING SITE FOR RESIDUE MN A 301' AC2 Software A MN 302 ? 6 'BINDING SITE FOR RESIDUE MN A 302' AC3 Software A MN 303 ? 6 'BINDING SITE FOR RESIDUE MN A 303' AC4 Software A MN 304 ? 3 'BINDING SITE FOR RESIDUE MN A 304' AC5 Software A PO4 305 ? 7 'BINDING SITE FOR RESIDUE PO4 A 305' AC6 Software A PO4 306 ? 7 'BINDING SITE FOR RESIDUE PO4 A 306' AC7 Software A MPD 307 ? 6 'BINDING SITE FOR RESIDUE MPD A 307' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 98 ? HIS A 111 . ? 1_555 ? 2 AC1 6 ASP A 121 ? ASP A 134 . ? 1_555 ? 3 AC1 6 ASP A 125 ? ASP A 138 . ? 1_555 ? 4 AC1 6 ASP A 202 ? ASP A 215 . ? 1_555 ? 5 AC1 6 MN C . ? MN A 302 . ? 1_555 ? 6 AC1 6 MN D . ? MN A 303 . ? 1_555 ? 7 AC2 6 ASP A 121 ? ASP A 134 . ? 1_555 ? 8 AC2 6 HIS A 123 ? HIS A 136 . ? 1_555 ? 9 AC2 6 ASP A 202 ? ASP A 215 . ? 1_555 ? 10 AC2 6 ASP A 204 ? ASP A 217 . ? 1_555 ? 11 AC2 6 MN B . ? MN A 301 . ? 1_555 ? 12 AC2 6 MN D . ? MN A 303 . ? 1_555 ? 13 AC3 6 ASP A 125 ? ASP A 138 . ? 1_555 ? 14 AC3 6 HIS A 137 ? HIS A 150 . ? 1_555 ? 15 AC3 6 ASP A 202 ? ASP A 215 . ? 1_555 ? 16 AC3 6 GLU A 248 ? GLU A 261 . ? 1_555 ? 17 AC3 6 MN B . ? MN A 301 . ? 1_555 ? 18 AC3 6 MN C . ? MN A 302 . ? 1_555 ? 19 AC4 3 ASN A 223 ? ASN A 236 . ? 2_655 ? 20 AC4 3 ASN A 223 ? ASN A 236 . ? 3_665 ? 21 AC4 3 ASN A 223 ? ASN A 236 . ? 1_555 ? 22 AC5 7 THR A 21 ? THR A 34 . ? 1_555 ? 23 AC5 7 SER A 22 ? SER A 35 . ? 1_555 ? 24 AC5 7 ASN A 23 ? ASN A 36 . ? 1_555 ? 25 AC5 7 ARG A 24 ? ARG A 37 . ? 1_555 ? 26 AC5 7 TYR A 130 ? TYR A 143 . ? 1_555 ? 27 AC5 7 HIS A 137 ? HIS A 150 . ? 1_555 ? 28 AC5 7 HOH I . ? HOH A 323 . ? 1_555 ? 29 AC6 7 ARG A 86 ? ARG A 99 . ? 1_555 ? 30 AC6 7 TYR A 130 ? TYR A 143 . ? 2_665 ? 31 AC6 7 ASN A 131 ? ASN A 144 . ? 2_665 ? 32 AC6 7 ASN A 132 ? ASN A 145 . ? 2_665 ? 33 AC6 7 HOH I . ? HOH A 364 . ? 2_665 ? 34 AC6 7 HOH I . ? HOH A 419 . ? 1_555 ? 35 AC6 7 HOH I . ? HOH A 431 . ? 1_555 ? 36 AC7 6 HOH I . ? HOH A 6 . ? 1_555 ? 37 AC7 6 PHE A 13 ? PHE A 26 . ? 1_555 ? 38 AC7 6 GLY A 14 ? GLY A 27 . ? 1_555 ? 39 AC7 6 SER A 31 ? SER A 44 . ? 1_555 ? 40 AC7 6 ARG A 35 ? ARG A 48 . ? 1_555 ? 41 AC7 6 ASP A 59 ? ASP A 72 . ? 1_555 ? # _database_PDB_matrix.entry_id 3LHL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LHL _atom_sites.fract_transf_matrix[1][1] 0.012928 _atom_sites.fract_transf_matrix[1][2] 0.007464 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014928 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006020 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 14 ? ? ? A . n A 1 2 SER 2 15 ? ? ? A . n A 1 3 LEU 3 16 ? ? ? A . n A 1 4 ASN 4 17 17 ASN ASN A . n A 1 5 TYR 5 18 18 TYR TYR A . n A 1 6 GLU 6 19 19 GLU GLU A . n A 1 7 GLU 7 20 20 GLU GLU A . n A 1 8 SER 8 21 21 SER SER A . n A 1 9 ASN 9 22 22 ASN ASN A . n A 1 10 LEU 10 23 23 LEU LEU A . n A 1 11 ILE 11 24 24 ILE ILE A . n A 1 12 VAL 12 25 25 VAL VAL A . n A 1 13 PHE 13 26 26 PHE PHE A . n A 1 14 GLY 14 27 27 GLY GLY A . n A 1 15 VAL 15 28 28 VAL VAL A . n A 1 16 GLY 16 29 29 GLY GLY A . n A 1 17 PHE 17 30 30 PHE PHE A . n A 1 18 ASP 18 31 31 ASP ASP A . n A 1 19 GLY 19 32 32 GLY GLY A . n A 1 20 THR 20 33 33 THR THR A . n A 1 21 THR 21 34 34 THR THR A . n A 1 22 SER 22 35 35 SER SER A . n A 1 23 ASN 23 36 36 ASN ASN A . n A 1 24 ARG 24 37 37 ARG ARG A . n A 1 25 PRO 25 38 38 PRO PRO A . n A 1 26 GLY 26 39 39 GLY GLY A . n A 1 27 ALA 27 40 40 ALA ALA A . n A 1 28 ARG 28 41 41 ARG ARG A . n A 1 29 PHE 29 42 42 PHE PHE A . n A 1 30 ALA 30 43 43 ALA ALA A . n A 1 31 SER 31 44 44 SER SER A . n A 1 32 SER 32 45 45 SER SER A . n A 1 33 SER 33 46 46 SER SER A . n A 1 34 MSE 34 47 47 MSE MSE A . n A 1 35 ARG 35 48 48 ARG ARG A . n A 1 36 LYS 36 49 49 LYS LYS A . n A 1 37 GLU 37 50 50 GLU GLU A . n A 1 38 PHE 38 51 51 PHE PHE A . n A 1 39 TYR 39 52 52 TYR TYR A . n A 1 40 GLY 40 53 53 GLY GLY A . n A 1 41 LEU 41 54 54 LEU LEU A . n A 1 42 GLU 42 55 55 GLU GLU A . n A 1 43 THR 43 56 56 THR THR A . n A 1 44 TYR 44 57 57 TYR TYR A . n A 1 45 SER 45 58 58 SER SER A . n A 1 46 PRO 46 59 59 PRO PRO A . n A 1 47 PHE 47 60 60 PHE PHE A . n A 1 48 LEU 48 61 61 LEU LEU A . n A 1 49 ASP 49 62 62 ASP ASP A . n A 1 50 LEU 50 63 63 LEU LEU A . n A 1 51 ASP 51 64 64 ASP ASP A . n A 1 52 LEU 52 65 65 LEU LEU A . n A 1 53 GLU 53 66 66 GLU GLU A . n A 1 54 ASP 54 67 67 ASP ASP A . n A 1 55 TYR 55 68 68 TYR TYR A . n A 1 56 ASN 56 69 69 ASN ASN A . n A 1 57 ILE 57 70 70 ILE ILE A . n A 1 58 CYS 58 71 71 CYS CYS A . n A 1 59 ASP 59 72 72 ASP ASP A . n A 1 60 TYR 60 73 73 TYR TYR A . n A 1 61 GLY 61 74 74 GLY GLY A . n A 1 62 ASP 62 75 75 ASP ASP A . n A 1 63 LEU 63 76 76 LEU LEU A . n A 1 64 GLU 64 77 77 GLU GLU A . n A 1 65 ILE 65 78 78 ILE ILE A . n A 1 66 SER 66 79 79 SER SER A . n A 1 67 VAL 67 80 80 VAL VAL A . n A 1 68 GLY 68 81 81 GLY GLY A . n A 1 69 SER 69 82 82 SER SER A . n A 1 70 THR 70 83 83 THR THR A . n A 1 71 GLU 71 84 84 GLU GLU A . n A 1 72 GLN 72 85 85 GLN GLN A . n A 1 73 VAL 73 86 86 VAL VAL A . n A 1 74 LEU 74 87 87 LEU LEU A . n A 1 75 LYS 75 88 88 LYS LYS A . n A 1 76 GLU 76 89 89 GLU GLU A . n A 1 77 ILE 77 90 90 ILE ILE A . n A 1 78 TYR 78 91 91 TYR TYR A . n A 1 79 GLN 79 92 92 GLN GLN A . n A 1 80 GLU 80 93 93 GLU GLU A . n A 1 81 THR 81 94 94 THR THR A . n A 1 82 TYR 82 95 95 TYR TYR A . n A 1 83 LYS 83 96 96 LYS LYS A . n A 1 84 ILE 84 97 97 ILE ILE A . n A 1 85 VAL 85 98 98 VAL VAL A . n A 1 86 ARG 86 99 99 ARG ARG A . n A 1 87 ASP 87 100 100 ASP ASP A . n A 1 88 SER 88 101 101 SER SER A . n A 1 89 LYS 89 102 102 LYS LYS A . n A 1 90 VAL 90 103 103 VAL VAL A . n A 1 91 PRO 91 104 104 PRO PRO A . n A 1 92 PHE 92 105 105 PHE PHE A . n A 1 93 MSE 93 106 106 MSE MSE A . n A 1 94 ILE 94 107 107 ILE ILE A . n A 1 95 GLY 95 108 108 GLY GLY A . n A 1 96 GLY 96 109 109 GLY GLY A . n A 1 97 GLU 97 110 110 GLU GLU A . n A 1 98 HIS 98 111 111 HIS HIS A . n A 1 99 LEU 99 112 112 LEU LEU A . n A 1 100 VAL 100 113 113 VAL VAL A . n A 1 101 THR 101 114 114 THR THR A . n A 1 102 LEU 102 115 115 LEU LEU A . n A 1 103 PRO 103 116 116 PRO PRO A . n A 1 104 ALA 104 117 117 ALA ALA A . n A 1 105 PHE 105 118 118 PHE PHE A . n A 1 106 LYS 106 119 119 LYS LYS A . n A 1 107 ALA 107 120 120 ALA ALA A . n A 1 108 VAL 108 121 121 VAL VAL A . n A 1 109 HIS 109 122 122 HIS HIS A . n A 1 110 GLU 110 123 123 GLU GLU A . n A 1 111 LYS 111 124 124 LYS LYS A . n A 1 112 TYR 112 125 125 TYR TYR A . n A 1 113 ASN 113 126 126 ASN ASN A . n A 1 114 ASP 114 127 127 ASP ASP A . n A 1 115 ILE 115 128 128 ILE ILE A . n A 1 116 TYR 116 129 129 TYR TYR A . n A 1 117 VAL 117 130 130 VAL VAL A . n A 1 118 ILE 118 131 131 ILE ILE A . n A 1 119 HIS 119 132 132 HIS HIS A . n A 1 120 PHE 120 133 133 PHE PHE A . n A 1 121 ASP 121 134 134 ASP ASP A . n A 1 122 ALA 122 135 135 ALA ALA A . n A 1 123 HIS 123 136 136 HIS HIS A . n A 1 124 THR 124 137 137 THR THR A . n A 1 125 ASP 125 138 138 ASP ASP A . n A 1 126 LEU 126 139 139 LEU LEU A . n A 1 127 ARG 127 140 140 ARG ARG A . n A 1 128 GLU 128 141 141 GLU GLU A . n A 1 129 GLU 129 142 142 GLU GLU A . n A 1 130 TYR 130 143 143 TYR TYR A . n A 1 131 ASN 131 144 144 ASN ASN A . n A 1 132 ASN 132 145 145 ASN ASN A . n A 1 133 SER 133 146 146 SER SER A . n A 1 134 LYS 134 147 147 LYS LYS A . n A 1 135 ASN 135 148 148 ASN ASN A . n A 1 136 SER 136 149 149 SER SER A . n A 1 137 HIS 137 150 150 HIS HIS A . n A 1 138 ALA 138 151 151 ALA ALA A . n A 1 139 THR 139 152 152 THR THR A . n A 1 140 VAL 140 153 153 VAL VAL A . n A 1 141 ILE 141 154 154 ILE ILE A . n A 1 142 LYS 142 155 155 LYS LYS A . n A 1 143 ARG 143 156 156 ARG ARG A . n A 1 144 ILE 144 157 157 ILE ILE A . n A 1 145 TRP 145 158 158 TRP TRP A . n A 1 146 ASP 146 159 159 ASP ASP A . n A 1 147 ILE 147 160 160 ILE ILE A . n A 1 148 VAL 148 161 161 VAL VAL A . n A 1 149 GLY 149 162 162 GLY GLY A . n A 1 150 ASP 150 163 163 ASP ASP A . n A 1 151 ASN 151 164 164 ASN ASN A . n A 1 152 LYS 152 165 165 LYS LYS A . n A 1 153 ILE 153 166 166 ILE ILE A . n A 1 154 PHE 154 167 167 PHE PHE A . n A 1 155 GLN 155 168 168 GLN GLN A . n A 1 156 PHE 156 169 169 PHE PHE A . n A 1 157 GLY 157 170 170 GLY GLY A . n A 1 158 ILE 158 171 171 ILE ILE A . n A 1 159 ARG 159 172 172 ARG ARG A . n A 1 160 SER 160 173 173 SER SER A . n A 1 161 GLY 161 174 174 GLY GLY A . n A 1 162 THR 162 175 175 THR THR A . n A 1 163 LYS 163 176 176 LYS LYS A . n A 1 164 GLU 164 177 177 GLU GLU A . n A 1 165 GLU 165 178 178 GLU GLU A . n A 1 166 PHE 166 179 179 PHE PHE A . n A 1 167 LYS 167 180 180 LYS LYS A . n A 1 168 PHE 168 181 181 PHE PHE A . n A 1 169 ALA 169 182 182 ALA ALA A . n A 1 170 THR 170 183 183 THR THR A . n A 1 171 GLU 171 184 184 GLU GLU A . n A 1 172 GLU 172 185 185 GLU GLU A . n A 1 173 LYS 173 186 186 LYS LYS A . n A 1 174 HIS 174 187 187 HIS HIS A . n A 1 175 THR 175 188 188 THR THR A . n A 1 176 TYR 176 189 189 TYR TYR A . n A 1 177 MSE 177 190 190 MSE MSE A . n A 1 178 GLU 178 191 191 GLU GLU A . n A 1 179 ILE 179 192 192 ILE ILE A . n A 1 180 GLY 180 193 193 GLY GLY A . n A 1 181 GLY 181 194 194 GLY GLY A . n A 1 182 ILE 182 195 195 ILE ILE A . n A 1 183 ASP 183 196 196 ASP ASP A . n A 1 184 THR 184 197 197 THR THR A . n A 1 185 PHE 185 198 198 PHE PHE A . n A 1 186 GLU 186 199 199 GLU GLU A . n A 1 187 ASN 187 200 200 ASN ASN A . n A 1 188 ILE 188 201 201 ILE ILE A . n A 1 189 VAL 189 202 202 VAL VAL A . n A 1 190 ASN 190 203 203 ASN ASN A . n A 1 191 MSE 191 204 204 MSE MSE A . n A 1 192 LEU 192 205 205 LEU LEU A . n A 1 193 ASN 193 206 206 ASN ASN A . n A 1 194 GLY 194 207 207 GLY GLY A . n A 1 195 LYS 195 208 208 LYS LYS A . n A 1 196 ASN 196 209 209 ASN ASN A . n A 1 197 ILE 197 210 210 ILE ILE A . n A 1 198 TYR 198 211 211 TYR TYR A . n A 1 199 LEU 199 212 212 LEU LEU A . n A 1 200 THR 200 213 213 THR THR A . n A 1 201 ILE 201 214 214 ILE ILE A . n A 1 202 ASP 202 215 215 ASP ASP A . n A 1 203 LEU 203 216 216 LEU LEU A . n A 1 204 ASP 204 217 217 ASP ASP A . n A 1 205 VAL 205 218 218 VAL VAL A . n A 1 206 LEU 206 219 219 LEU LEU A . n A 1 207 ASP 207 220 220 ASP ASP A . n A 1 208 ALA 208 221 221 ALA ALA A . n A 1 209 SER 209 222 222 SER SER A . n A 1 210 VAL 210 223 223 VAL VAL A . n A 1 211 PHE 211 224 224 PHE PHE A . n A 1 212 PRO 212 225 225 PRO PRO A . n A 1 213 GLY 213 226 226 GLY GLY A . n A 1 214 THR 214 227 227 THR THR A . n A 1 215 GLY 215 228 228 GLY GLY A . n A 1 216 THR 216 229 229 THR THR A . n A 1 217 PRO 217 230 230 PRO PRO A . n A 1 218 GLU 218 231 231 GLU GLU A . n A 1 219 PRO 219 232 232 PRO PRO A . n A 1 220 GLY 220 233 233 GLY GLY A . n A 1 221 GLY 221 234 234 GLY GLY A . n A 1 222 VAL 222 235 235 VAL VAL A . n A 1 223 ASN 223 236 236 ASN ASN A . n A 1 224 TYR 224 237 237 TYR TYR A . n A 1 225 ARG 225 238 238 ARG ARG A . n A 1 226 GLU 226 239 239 GLU GLU A . n A 1 227 PHE 227 240 240 PHE PHE A . n A 1 228 GLN 228 241 241 GLN GLN A . n A 1 229 GLU 229 242 242 GLU GLU A . n A 1 230 ILE 230 243 243 ILE ILE A . n A 1 231 PHE 231 244 244 PHE PHE A . n A 1 232 LYS 232 245 245 LYS LYS A . n A 1 233 ILE 233 246 246 ILE ILE A . n A 1 234 ILE 234 247 247 ILE ILE A . n A 1 235 LYS 235 248 248 LYS LYS A . n A 1 236 ASN 236 249 249 ASN ASN A . n A 1 237 SER 237 250 250 SER SER A . n A 1 238 ASN 238 251 251 ASN ASN A . n A 1 239 ILE 239 252 252 ILE ILE A . n A 1 240 ASN 240 253 253 ASN ASN A . n A 1 241 ILE 241 254 254 ILE ILE A . n A 1 242 VAL 242 255 255 VAL VAL A . n A 1 243 GLY 243 256 256 GLY GLY A . n A 1 244 CYS 244 257 257 CYS CYS A . n A 1 245 ASP 245 258 258 ASP ASP A . n A 1 246 ILE 246 259 259 ILE ILE A . n A 1 247 VAL 247 260 260 VAL VAL A . n A 1 248 GLU 248 261 261 GLU GLU A . n A 1 249 LEU 249 262 262 LEU LEU A . n A 1 250 SER 250 263 263 SER SER A . n A 1 251 PRO 251 264 264 PRO PRO A . n A 1 252 ASP 252 265 265 ASP ASP A . n A 1 253 TYR 253 266 266 TYR TYR A . n A 1 254 ASP 254 267 267 ASP ASP A . n A 1 255 THR 255 268 268 THR THR A . n A 1 256 THR 256 269 269 THR THR A . n A 1 257 GLY 257 270 270 GLY GLY A . n A 1 258 VAL 258 271 271 VAL VAL A . n A 1 259 SER 259 272 272 SER SER A . n A 1 260 THR 260 273 273 THR THR A . n A 1 261 VAL 261 274 274 VAL VAL A . n A 1 262 ILE 262 275 275 ILE ILE A . n A 1 263 ALA 263 276 276 ALA ALA A . n A 1 264 CYS 264 277 277 CYS CYS A . n A 1 265 LYS 265 278 278 LYS LYS A . n A 1 266 ILE 266 279 279 ILE ILE A . n A 1 267 LEU 267 280 280 LEU LEU A . n A 1 268 ARG 268 281 281 ARG ARG A . n A 1 269 GLU 269 282 282 GLU GLU A . n A 1 270 LEU 270 283 283 LEU LEU A . n A 1 271 CYS 271 284 284 CYS CYS A . n A 1 272 LEU 272 285 285 LEU LEU A . n A 1 273 ILE 273 286 286 ILE ILE A . n A 1 274 ILE 274 287 287 ILE ILE A . n A 1 275 SER 275 288 288 SER SER A . n A 1 276 ASP 276 289 289 ASP ASP A . n A 1 277 LYS 277 290 290 LYS LYS A . n A 1 278 ILE 278 291 291 ILE ILE A . n A 1 279 LYS 279 292 292 LYS LYS A . n A 1 280 GLU 280 293 ? ? ? A . n A 1 281 GLY 281 294 ? ? ? A . n A 1 282 HIS 282 295 ? ? ? A . n A 1 283 HIS 283 296 ? ? ? A . n A 1 284 HIS 284 297 ? ? ? A . n A 1 285 HIS 285 298 ? ? ? A . n A 1 286 HIS 286 299 ? ? ? A . n A 1 287 HIS 287 300 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 301 301 MN MN A . C 2 MN 1 302 302 MN MN A . D 2 MN 1 303 303 MN MN A . E 2 MN 1 304 304 MN MN A . F 3 PO4 1 305 305 PO4 PO4 A . G 3 PO4 1 306 306 PO4 PO4 A . H 4 MPD 1 307 307 MPD MPD A . I 5 HOH 1 1 1 HOH TIP A . I 5 HOH 2 2 2 HOH TIP A . I 5 HOH 3 3 3 HOH TIP A . I 5 HOH 4 4 4 HOH TIP A . I 5 HOH 5 5 5 HOH TIP A . I 5 HOH 6 6 6 HOH TIP A . I 5 HOH 7 7 7 HOH TIP A . I 5 HOH 8 8 8 HOH TIP A . I 5 HOH 9 9 9 HOH TIP A . I 5 HOH 10 10 10 HOH TIP A . I 5 HOH 11 11 11 HOH TIP A . I 5 HOH 12 12 12 HOH TIP A . I 5 HOH 13 13 13 HOH TIP A . I 5 HOH 14 308 14 HOH TIP A . I 5 HOH 15 309 15 HOH TIP A . I 5 HOH 16 310 16 HOH TIP A . I 5 HOH 17 311 17 HOH TIP A . I 5 HOH 18 312 18 HOH TIP A . I 5 HOH 19 313 19 HOH TIP A . I 5 HOH 20 314 20 HOH TIP A . I 5 HOH 21 315 21 HOH TIP A . I 5 HOH 22 316 22 HOH TIP A . I 5 HOH 23 317 23 HOH TIP A . I 5 HOH 24 318 24 HOH TIP A . I 5 HOH 25 319 25 HOH TIP A . I 5 HOH 26 320 26 HOH TIP A . I 5 HOH 27 321 27 HOH TIP A . I 5 HOH 28 322 28 HOH TIP A . I 5 HOH 29 323 29 HOH TIP A . I 5 HOH 30 324 30 HOH TIP A . I 5 HOH 31 325 31 HOH TIP A . I 5 HOH 32 326 32 HOH TIP A . I 5 HOH 33 327 33 HOH TIP A . I 5 HOH 34 328 34 HOH TIP A . I 5 HOH 35 329 35 HOH TIP A . I 5 HOH 36 330 36 HOH TIP A . I 5 HOH 37 331 37 HOH TIP A . I 5 HOH 38 332 38 HOH TIP A . I 5 HOH 39 333 39 HOH TIP A . I 5 HOH 40 334 40 HOH TIP A . I 5 HOH 41 335 41 HOH TIP A . I 5 HOH 42 336 42 HOH TIP A . I 5 HOH 43 337 43 HOH TIP A . I 5 HOH 44 338 44 HOH TIP A . I 5 HOH 45 339 45 HOH TIP A . I 5 HOH 46 340 46 HOH TIP A . I 5 HOH 47 341 47 HOH TIP A . I 5 HOH 48 342 48 HOH TIP A . I 5 HOH 49 343 49 HOH TIP A . I 5 HOH 50 344 50 HOH TIP A . I 5 HOH 51 345 51 HOH TIP A . I 5 HOH 52 346 52 HOH TIP A . I 5 HOH 53 347 53 HOH TIP A . I 5 HOH 54 348 54 HOH TIP A . I 5 HOH 55 349 55 HOH TIP A . I 5 HOH 56 350 56 HOH TIP A . I 5 HOH 57 351 57 HOH TIP A . I 5 HOH 58 352 58 HOH TIP A . I 5 HOH 59 353 59 HOH TIP A . I 5 HOH 60 354 60 HOH TIP A . I 5 HOH 61 355 61 HOH TIP A . I 5 HOH 62 356 62 HOH TIP A . I 5 HOH 63 357 63 HOH TIP A . I 5 HOH 64 358 64 HOH TIP A . I 5 HOH 65 359 65 HOH TIP A . I 5 HOH 66 360 66 HOH TIP A . I 5 HOH 67 361 67 HOH TIP A . I 5 HOH 68 362 68 HOH TIP A . I 5 HOH 69 363 69 HOH TIP A . I 5 HOH 70 364 70 HOH TIP A . I 5 HOH 71 365 71 HOH TIP A . I 5 HOH 72 366 72 HOH TIP A . I 5 HOH 73 367 73 HOH TIP A . I 5 HOH 74 368 74 HOH TIP A . I 5 HOH 75 369 75 HOH TIP A . I 5 HOH 76 370 76 HOH TIP A . I 5 HOH 77 371 77 HOH TIP A . I 5 HOH 78 372 78 HOH TIP A . I 5 HOH 79 373 79 HOH TIP A . I 5 HOH 80 374 80 HOH TIP A . I 5 HOH 81 375 81 HOH TIP A . I 5 HOH 82 376 82 HOH TIP A . I 5 HOH 83 377 83 HOH TIP A . I 5 HOH 84 378 84 HOH TIP A . I 5 HOH 85 379 85 HOH TIP A . I 5 HOH 86 380 86 HOH TIP A . I 5 HOH 87 381 87 HOH TIP A . I 5 HOH 88 382 88 HOH TIP A . I 5 HOH 89 383 89 HOH TIP A . I 5 HOH 90 384 90 HOH TIP A . I 5 HOH 91 385 91 HOH TIP A . I 5 HOH 92 386 92 HOH TIP A . I 5 HOH 93 387 93 HOH TIP A . I 5 HOH 94 388 94 HOH TIP A . I 5 HOH 95 389 95 HOH TIP A . I 5 HOH 96 390 96 HOH TIP A . I 5 HOH 97 391 97 HOH TIP A . I 5 HOH 98 392 98 HOH TIP A . I 5 HOH 99 393 99 HOH TIP A . I 5 HOH 100 394 100 HOH TIP A . I 5 HOH 101 395 101 HOH TIP A . I 5 HOH 102 396 102 HOH TIP A . I 5 HOH 103 397 103 HOH TIP A . I 5 HOH 104 398 104 HOH TIP A . I 5 HOH 105 399 105 HOH TIP A . I 5 HOH 106 400 106 HOH TIP A . I 5 HOH 107 401 107 HOH TIP A . I 5 HOH 108 402 108 HOH TIP A . I 5 HOH 109 403 109 HOH TIP A . I 5 HOH 110 404 110 HOH TIP A . I 5 HOH 111 405 111 HOH TIP A . I 5 HOH 112 406 112 HOH TIP A . I 5 HOH 113 407 113 HOH TIP A . I 5 HOH 114 408 114 HOH TIP A . I 5 HOH 115 409 115 HOH TIP A . I 5 HOH 116 410 116 HOH TIP A . I 5 HOH 117 411 117 HOH TIP A . I 5 HOH 118 412 118 HOH TIP A . I 5 HOH 119 413 119 HOH TIP A . I 5 HOH 120 414 120 HOH TIP A . I 5 HOH 121 415 121 HOH TIP A . I 5 HOH 122 416 122 HOH TIP A . I 5 HOH 123 417 123 HOH TIP A . I 5 HOH 124 418 124 HOH TIP A . I 5 HOH 125 419 125 HOH TIP A . I 5 HOH 126 420 126 HOH TIP A . I 5 HOH 127 421 127 HOH TIP A . I 5 HOH 128 422 128 HOH TIP A . I 5 HOH 129 423 129 HOH TIP A . I 5 HOH 130 424 130 HOH TIP A . I 5 HOH 131 425 131 HOH TIP A . I 5 HOH 132 426 132 HOH TIP A . I 5 HOH 133 427 133 HOH TIP A . I 5 HOH 134 428 134 HOH TIP A . I 5 HOH 135 429 135 HOH TIP A . I 5 HOH 136 430 136 HOH TIP A . I 5 HOH 137 431 137 HOH TIP A . I 5 HOH 138 432 138 HOH TIP A . I 5 HOH 139 433 139 HOH TIP A . I 5 HOH 140 434 140 HOH TIP A . I 5 HOH 141 435 141 HOH TIP A . I 5 HOH 142 436 142 HOH TIP A . I 5 HOH 143 437 143 HOH TIP A . I 5 HOH 144 438 144 HOH TIP A . I 5 HOH 145 439 145 HOH TIP A . I 5 HOH 146 440 146 HOH TIP A . I 5 HOH 147 441 147 HOH TIP A . I 5 HOH 148 442 148 HOH TIP A . I 5 HOH 149 443 149 HOH TIP A . I 5 HOH 150 444 150 HOH TIP A . I 5 HOH 151 445 151 HOH TIP A . I 5 HOH 152 446 152 HOH TIP A . I 5 HOH 153 447 153 HOH TIP A . I 5 HOH 154 448 154 HOH TIP A . I 5 HOH 155 449 155 HOH TIP A . I 5 HOH 156 450 156 HOH TIP A . I 5 HOH 157 451 157 HOH TIP A . I 5 HOH 158 452 158 HOH TIP A . I 5 HOH 159 453 159 HOH TIP A . I 5 HOH 160 454 160 HOH TIP A . I 5 HOH 161 455 161 HOH TIP A . I 5 HOH 162 456 162 HOH TIP A . I 5 HOH 163 457 163 HOH TIP A . I 5 HOH 164 458 164 HOH TIP A . I 5 HOH 165 459 165 HOH TIP A . I 5 HOH 166 460 166 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 34 A MSE 47 ? MET SELENOMETHIONINE 2 A MSE 93 A MSE 106 ? MET SELENOMETHIONINE 3 A MSE 177 A MSE 190 ? MET SELENOMETHIONINE 4 A MSE 191 A MSE 204 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 8100 ? 2 MORE -94 ? 2 'SSA (A^2)' 30460 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 77.3500000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 38.6750000000 -0.8660254038 -0.5000000000 0.0000000000 66.9870649827 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id MN _pdbx_struct_special_symmetry.auth_seq_id 304 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id MN _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 98 ? A HIS 111 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 OD2 ? A ASP 121 ? A ASP 134 ? 1_555 92.2 ? 2 ND1 ? A HIS 98 ? A HIS 111 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 OD2 ? A ASP 125 ? A ASP 138 ? 1_555 84.3 ? 3 OD2 ? A ASP 121 ? A ASP 134 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 OD2 ? A ASP 125 ? A ASP 138 ? 1_555 83.6 ? 4 ND1 ? A HIS 98 ? A HIS 111 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 OD2 ? A ASP 202 ? A ASP 215 ? 1_555 104.3 ? 5 OD2 ? A ASP 121 ? A ASP 134 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 OD2 ? A ASP 202 ? A ASP 215 ? 1_555 86.8 ? 6 OD2 ? A ASP 125 ? A ASP 138 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 OD2 ? A ASP 202 ? A ASP 215 ? 1_555 167.4 ? 7 ND1 ? A HIS 98 ? A HIS 111 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 MN ? D MN . ? A MN 303 ? 1_555 129.2 ? 8 OD2 ? A ASP 121 ? A ASP 134 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 MN ? D MN . ? A MN 303 ? 1_555 138.5 ? 9 OD2 ? A ASP 125 ? A ASP 138 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 MN ? D MN . ? A MN 303 ? 1_555 100.1 ? 10 OD2 ? A ASP 202 ? A ASP 215 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 MN ? D MN . ? A MN 303 ? 1_555 81.8 ? 11 OD1 ? A ASP 121 ? A ASP 134 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 ND1 ? A HIS 123 ? A HIS 136 ? 1_555 90.6 ? 12 OD1 ? A ASP 121 ? A ASP 134 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD2 ? A ASP 202 ? A ASP 215 ? 1_555 87.9 ? 13 ND1 ? A HIS 123 ? A HIS 136 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD2 ? A ASP 202 ? A ASP 215 ? 1_555 173.2 ? 14 OD1 ? A ASP 121 ? A ASP 134 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD2 ? A ASP 204 ? A ASP 217 ? 1_555 127.5 ? 15 ND1 ? A HIS 123 ? A HIS 136 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD2 ? A ASP 204 ? A ASP 217 ? 1_555 88.7 ? 16 OD2 ? A ASP 202 ? A ASP 215 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD2 ? A ASP 204 ? A ASP 217 ? 1_555 97.4 ? 17 OD1 ? A ASP 121 ? A ASP 134 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD1 ? A ASP 204 ? A ASP 217 ? 1_555 75.4 ? 18 ND1 ? A HIS 123 ? A HIS 136 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD1 ? A ASP 204 ? A ASP 217 ? 1_555 93.1 ? 19 OD2 ? A ASP 202 ? A ASP 215 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD1 ? A ASP 204 ? A ASP 217 ? 1_555 92.9 ? 20 OD2 ? A ASP 204 ? A ASP 217 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD1 ? A ASP 204 ? A ASP 217 ? 1_555 52.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-11-16 4 'Structure model' 1 3 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' citation_author 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 4 'Structure model' '_citation_author.identifier_ORCID' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_ref_seq_dif.details' 27 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 28 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 29 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CBASS 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SHELXD phasing . ? 5 SHARP phasing . ? 6 ARP/wARP 'model building' . ? 7 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 SER _pdbx_validate_rmsd_angle.auth_seq_id_1 263 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 264 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 264 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 130.22 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 10.92 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 31 ? ? -143.92 29.65 2 1 SER A 35 ? ? -93.53 -63.76 3 1 TYR A 125 ? ? -102.25 77.74 4 1 ARG A 172 ? ? -147.68 10.99 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 14 ? A MSE 1 2 1 Y 1 A SER 15 ? A SER 2 3 1 Y 1 A LEU 16 ? A LEU 3 4 1 Y 1 A GLU 293 ? A GLU 280 5 1 Y 1 A GLY 294 ? A GLY 281 6 1 Y 1 A HIS 295 ? A HIS 282 7 1 Y 1 A HIS 296 ? A HIS 283 8 1 Y 1 A HIS 297 ? A HIS 284 9 1 Y 1 A HIS 298 ? A HIS 285 10 1 Y 1 A HIS 299 ? A HIS 286 11 1 Y 1 A HIS 300 ? A HIS 287 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 'PHOSPHATE ION' PO4 4 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 5 water HOH #