HEADER TRANSPORT PROTEIN 27-JAN-10 3LKB TITLE CRYSTAL STRUCTURE OF A BRANCHED CHAIN AMINO ACID ABC TRANSPORTER FROM TITLE 2 THERMUS THERMOPHILUS WITH BOUND VALINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE BRANCHED-CHAIN AMINO ACID ABC TRANSPORTER, AMINO COMPND 3 ACID BINDING PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: SEQUENCE DATABASE RESIDUES 25-407; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 ATCC: 27634 / DSM 579; SOURCE 6 GENE: TTHA0451; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21DE3 CODON+(RIL); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGX3(BC) KEYWDS BRANCHED AMINO ACID, ABC TRANSPORTER, 11235G, PSI-II, NYSGXRC, KEYWDS 2 STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.AGARWAL,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 21-FEB-24 3LKB 1 REMARK REVDAT 3 13-OCT-21 3LKB 1 SEQADV REVDAT 2 10-FEB-21 3LKB 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 2 1 LINK REVDAT 1 09-FEB-10 3LKB 0 JRNL AUTH R.AGARWAL,J.M.SAUDER,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A BRANCHED CHAIN AMINO ACID ABC JRNL TITL 2 TRANSPORTER FROM THERMUS THERMOPHILUS WITH BOUND VALINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.002 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : SI-III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31204 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 1.4M SODIUM CITRATE, 6% 2 REMARK 280 -PROPANOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.35400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.00100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.58800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.00100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.35400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.58800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 385 REMARK 465 GLY A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 385 REMARK 465 GLY B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 20 0.90 83.52 REMARK 500 TYR A 82 -86.94 -134.51 REMARK 500 GLU A 342 -82.39 -75.34 REMARK 500 TYR B 82 -80.26 -138.94 REMARK 500 THR B 124 152.86 -42.67 REMARK 500 ASN B 184 69.15 -68.49 REMARK 500 GLU B 342 -73.20 -61.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 VAL A 393 REMARK 610 VAL B 393 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 394 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 344 O REMARK 620 2 ASP A 344 OD1 78.6 REMARK 620 3 THR A 351 O 92.7 156.0 REMARK 620 4 GLY A 352 O 100.0 78.8 80.8 REMARK 620 5 HOH A 396 O 125.9 91.9 111.0 130.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 394 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 344 OD1 REMARK 620 2 ASP B 344 O 73.8 REMARK 620 3 THR B 351 O 151.1 86.7 REMARK 620 4 GLY B 352 O 86.1 96.5 75.0 REMARK 620 5 HOH B 403 O 92.4 135.1 116.3 125.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VAL A 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 4571 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VAL B 393 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 4571 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 394 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11235G RELATED DB: TARGETDB DBREF 3LKB A 3 384 UNP Q5SL42 Q5SL42_THET8 25 406 DBREF 3LKB B 3 384 UNP Q5SL42 Q5SL42_THET8 25 406 SEQADV 3LKB MET A 1 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB SER A 2 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB ALA A 293 UNP Q5SL42 VAL 315 ENGINEERED MUTATION SEQADV 3LKB ALA A 295 UNP Q5SL42 SER 317 ENGINEERED MUTATION SEQADV 3LKB GLU A 385 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB GLY A 386 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS A 387 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS A 388 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS A 389 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS A 390 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS A 391 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS A 392 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB MET B 1 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB SER B 2 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB ALA B 293 UNP Q5SL42 VAL 315 ENGINEERED MUTATION SEQADV 3LKB ALA B 295 UNP Q5SL42 SER 317 ENGINEERED MUTATION SEQADV 3LKB GLU B 385 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB GLY B 386 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS B 387 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS B 388 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS B 389 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS B 390 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS B 391 UNP Q5SL42 EXPRESSION TAG SEQADV 3LKB HIS B 392 UNP Q5SL42 EXPRESSION TAG SEQRES 1 A 392 MET SER LEU GLY GLN GLN GLN VAL THR LEU PHE TRP SER SEQRES 2 A 392 GLY ALA ILE THR GLY PRO THR SER ASP ALA GLY ALA PRO SEQRES 3 A 392 TYR GLY ALA ALA VAL GLU ASP TYR CYS LYS TRP ALA ASN SEQRES 4 A 392 GLU ARG LYS LEU VAL PRO GLY VAL VAL PHE ASN CYS VAL SEQRES 5 A 392 VAL ARG ASP ASP GLN TYR ASN ASN ALA ASN THR GLN ARG SEQRES 6 A 392 PHE PHE GLU GLU ALA VAL ASP ARG PHE LYS ILE PRO VAL SEQRES 7 A 392 PHE LEU SER TYR ALA THR GLY ALA ASN LEU GLN LEU LYS SEQRES 8 A 392 PRO LEU ILE GLN GLU LEU ARG ILE PRO THR ILE PRO ALA SEQRES 9 A 392 SER MET HIS ILE GLU LEU ILE ASP PRO PRO ASN ASN ASP SEQRES 10 A 392 TYR ILE PHE LEU PRO THR THR SER TYR SER GLU GLN VAL SEQRES 11 A 392 VAL ALA LEU LEU GLU TYR ILE ALA ARG GLU LYS LYS GLY SEQRES 12 A 392 ALA LYS VAL ALA LEU VAL VAL HIS PRO SER PRO PHE GLY SEQRES 13 A 392 ARG ALA PRO VAL GLU ASP ALA ARG LYS ALA ALA ARG GLU SEQRES 14 A 392 LEU GLY LEU GLN ILE VAL ASP VAL GLN GLU VAL GLY SER SEQRES 15 A 392 GLY ASN LEU ASP ASN THR ALA LEU LEU LYS ARG PHE GLU SEQRES 16 A 392 GLN ALA GLY VAL GLU TYR VAL VAL HIS GLN ASN VAL ALA SEQRES 17 A 392 GLY PRO VAL ALA ASN ILE LEU LYS ASP ALA LYS ARG LEU SEQRES 18 A 392 GLY LEU LYS MET ARG HIS LEU GLY ALA HIS TYR THR GLY SEQRES 19 A 392 GLY PRO ASP LEU ILE ALA LEU ALA GLY ASP ALA ALA GLU SEQRES 20 A 392 GLY PHE LEU TRP ALA THR SER PHE TYR MET ALA HIS GLU SEQRES 21 A 392 ASP THR PRO GLY ILE ARG LEU GLN LYS GLU ILE GLY ARG SEQRES 22 A 392 LYS TYR GLY ARG PRO GLU ASN PHE ILE GLU SER VAL ASN SEQRES 23 A 392 TYR THR ASN GLY MET LEU ALA ALA ALA ILE ALA VAL GLU SEQRES 24 A 392 ALA ILE ARG ARG ALA GLN GLU ARG PHE LYS ARG ILE THR SEQRES 25 A 392 ASN GLU THR VAL TYR GLN ALA ILE VAL GLY MET ASN GLY SEQRES 26 A 392 PRO ASN ALA PHE LYS PRO GLY PHE ALA VAL SER THR LYS SEQRES 27 A 392 GLN GLY VAL GLU ILE ASP PHE THR LYS SER GLU HIS THR SEQRES 28 A 392 GLY ALA GLU GLY LEU ARG ILE LEU GLU ALA LYS GLY GLY SEQRES 29 A 392 ARG PHE VAL PRO VAL THR GLU PRO PHE THR SER ALA LEU SEQRES 30 A 392 PHE ARG LYS VAL HIS TYR GLY GLU GLY HIS HIS HIS HIS SEQRES 31 A 392 HIS HIS SEQRES 1 B 392 MET SER LEU GLY GLN GLN GLN VAL THR LEU PHE TRP SER SEQRES 2 B 392 GLY ALA ILE THR GLY PRO THR SER ASP ALA GLY ALA PRO SEQRES 3 B 392 TYR GLY ALA ALA VAL GLU ASP TYR CYS LYS TRP ALA ASN SEQRES 4 B 392 GLU ARG LYS LEU VAL PRO GLY VAL VAL PHE ASN CYS VAL SEQRES 5 B 392 VAL ARG ASP ASP GLN TYR ASN ASN ALA ASN THR GLN ARG SEQRES 6 B 392 PHE PHE GLU GLU ALA VAL ASP ARG PHE LYS ILE PRO VAL SEQRES 7 B 392 PHE LEU SER TYR ALA THR GLY ALA ASN LEU GLN LEU LYS SEQRES 8 B 392 PRO LEU ILE GLN GLU LEU ARG ILE PRO THR ILE PRO ALA SEQRES 9 B 392 SER MET HIS ILE GLU LEU ILE ASP PRO PRO ASN ASN ASP SEQRES 10 B 392 TYR ILE PHE LEU PRO THR THR SER TYR SER GLU GLN VAL SEQRES 11 B 392 VAL ALA LEU LEU GLU TYR ILE ALA ARG GLU LYS LYS GLY SEQRES 12 B 392 ALA LYS VAL ALA LEU VAL VAL HIS PRO SER PRO PHE GLY SEQRES 13 B 392 ARG ALA PRO VAL GLU ASP ALA ARG LYS ALA ALA ARG GLU SEQRES 14 B 392 LEU GLY LEU GLN ILE VAL ASP VAL GLN GLU VAL GLY SER SEQRES 15 B 392 GLY ASN LEU ASP ASN THR ALA LEU LEU LYS ARG PHE GLU SEQRES 16 B 392 GLN ALA GLY VAL GLU TYR VAL VAL HIS GLN ASN VAL ALA SEQRES 17 B 392 GLY PRO VAL ALA ASN ILE LEU LYS ASP ALA LYS ARG LEU SEQRES 18 B 392 GLY LEU LYS MET ARG HIS LEU GLY ALA HIS TYR THR GLY SEQRES 19 B 392 GLY PRO ASP LEU ILE ALA LEU ALA GLY ASP ALA ALA GLU SEQRES 20 B 392 GLY PHE LEU TRP ALA THR SER PHE TYR MET ALA HIS GLU SEQRES 21 B 392 ASP THR PRO GLY ILE ARG LEU GLN LYS GLU ILE GLY ARG SEQRES 22 B 392 LYS TYR GLY ARG PRO GLU ASN PHE ILE GLU SER VAL ASN SEQRES 23 B 392 TYR THR ASN GLY MET LEU ALA ALA ALA ILE ALA VAL GLU SEQRES 24 B 392 ALA ILE ARG ARG ALA GLN GLU ARG PHE LYS ARG ILE THR SEQRES 25 B 392 ASN GLU THR VAL TYR GLN ALA ILE VAL GLY MET ASN GLY SEQRES 26 B 392 PRO ASN ALA PHE LYS PRO GLY PHE ALA VAL SER THR LYS SEQRES 27 B 392 GLN GLY VAL GLU ILE ASP PHE THR LYS SER GLU HIS THR SEQRES 28 B 392 GLY ALA GLU GLY LEU ARG ILE LEU GLU ALA LYS GLY GLY SEQRES 29 B 392 ARG PHE VAL PRO VAL THR GLU PRO PHE THR SER ALA LEU SEQRES 30 B 392 PHE ARG LYS VAL HIS TYR GLY GLU GLY HIS HIS HIS HIS SEQRES 31 B 392 HIS HIS HET VAL A 393 7 HET IPA A4571 4 HET NA A 394 1 HET VAL B 393 7 HET IPA B4571 4 HET NA B 394 1 HETNAM VAL VALINE HETNAM IPA ISOPROPYL ALCOHOL HETNAM NA SODIUM ION HETSYN IPA 2-PROPANOL FORMUL 3 VAL 2(C5 H11 N O2) FORMUL 4 IPA 2(C3 H8 O) FORMUL 5 NA 2(NA 1+) FORMUL 9 HOH *129(H2 O) HELIX 1 1 THR A 20 LYS A 42 1 23 HELIX 2 2 ASN A 59 ARG A 73 1 15 HELIX 3 3 ALA A 83 ARG A 98 1 16 HELIX 4 4 HIS A 107 ASP A 112 5 6 HELIX 5 5 SER A 125 LYS A 141 1 17 HELIX 6 6 SER A 153 ALA A 158 1 6 HELIX 7 7 PRO A 159 GLY A 171 1 13 HELIX 8 8 ASN A 187 ALA A 197 1 11 HELIX 9 9 VAL A 207 LEU A 221 1 15 HELIX 10 10 HIS A 231 GLY A 234 5 4 HELIX 11 11 GLY A 235 GLY A 243 1 9 HELIX 12 12 ASP A 244 GLU A 247 5 4 HELIX 13 13 THR A 262 TYR A 275 1 14 HELIX 14 14 PRO A 278 GLU A 283 1 6 HELIX 15 15 SER A 284 LYS A 309 1 26 HELIX 16 16 THR A 312 GLY A 322 1 11 HELIX 17 17 ASN A 324 ALA A 328 5 5 HELIX 18 18 SER A 375 GLY A 384 1 10 HELIX 19 19 THR B 20 LYS B 42 1 23 HELIX 20 20 ASN B 59 LYS B 75 1 17 HELIX 21 21 ALA B 83 ARG B 98 1 16 HELIX 22 22 HIS B 107 ILE B 111 5 5 HELIX 23 23 SER B 125 LYS B 141 1 17 HELIX 24 24 SER B 153 ALA B 158 1 6 HELIX 25 25 PRO B 159 GLY B 171 1 13 HELIX 26 26 ASN B 187 ALA B 197 1 11 HELIX 27 27 VAL B 207 LEU B 221 1 15 HELIX 28 28 HIS B 231 GLY B 234 5 4 HELIX 29 29 GLY B 235 GLY B 243 1 9 HELIX 30 30 ASP B 244 GLU B 247 5 4 HELIX 31 31 THR B 262 TYR B 275 1 14 HELIX 32 32 PRO B 278 GLU B 283 1 6 HELIX 33 33 SER B 284 LYS B 309 1 26 HELIX 34 34 THR B 312 GLY B 322 1 11 HELIX 35 35 ASN B 324 ALA B 328 5 5 HELIX 36 36 SER B 375 GLY B 384 1 10 SHEET 1 A 2 GLN A 6 GLY A 14 0 SHEET 2 A 2 VAL A 47 ASP A 55 1 O VAL A 52 N LEU A 10 SHEET 1 B 2 PHE A 79 SER A 81 0 SHEET 2 B 2 THR A 101 PRO A 103 1 O ILE A 102 N PHE A 79 SHEET 1 C 2 LEU A 121 THR A 123 0 SHEET 2 C 2 THR A 351 ALA A 353 1 O GLY A 352 N LEU A 121 SHEET 1 D 7 GLN A 173 GLU A 179 0 SHEET 2 D 7 LYS A 145 VAL A 150 1 N VAL A 146 O GLN A 173 SHEET 3 D 7 TYR A 201 GLN A 205 1 O VAL A 203 N ALA A 147 SHEET 4 D 7 ARG A 226 GLY A 229 1 O ARG A 226 N VAL A 202 SHEET 5 D 7 LEU A 250 THR A 253 1 O ALA A 252 N GLY A 229 SHEET 6 D 7 ARG A 357 LYS A 362 -1 O LEU A 359 N TRP A 251 SHEET 7 D 7 ARG A 365 PRO A 368 -1 O ARG A 365 N LYS A 362 SHEET 1 E 2 GLN B 6 GLY B 14 0 SHEET 2 E 2 VAL B 47 ASP B 55 1 O VAL B 48 N VAL B 8 SHEET 1 F 2 PHE B 79 SER B 81 0 SHEET 2 F 2 THR B 101 PRO B 103 1 O ILE B 102 N PHE B 79 SHEET 1 G 2 LEU B 121 THR B 123 0 SHEET 2 G 2 THR B 351 ALA B 353 1 O GLY B 352 N LEU B 121 SHEET 1 H 7 GLN B 173 GLU B 179 0 SHEET 2 H 7 LYS B 145 VAL B 150 1 N LEU B 148 O GLN B 178 SHEET 3 H 7 TYR B 201 GLN B 205 1 O VAL B 203 N ALA B 147 SHEET 4 H 7 ARG B 226 GLY B 229 1 O LEU B 228 N VAL B 202 SHEET 5 H 7 LEU B 250 THR B 253 1 O LEU B 250 N GLY B 229 SHEET 6 H 7 ARG B 357 LYS B 362 -1 O LEU B 359 N TRP B 251 SHEET 7 H 7 ARG B 365 PRO B 368 -1 O VAL B 367 N GLU B 360 LINK O ASP A 344 NA NA A 394 1555 1555 2.22 LINK OD1 ASP A 344 NA NA A 394 1555 1555 2.43 LINK O THR A 351 NA NA A 394 1555 1555 2.24 LINK O GLY A 352 NA NA A 394 1555 1555 2.47 LINK NA NA A 394 O HOH A 396 1555 1555 2.30 LINK OD1 ASP B 344 NA NA B 394 1555 1555 2.29 LINK O ASP B 344 NA NA B 394 1555 1555 2.43 LINK O THR B 351 NA NA B 394 1555 1555 2.32 LINK O GLY B 352 NA NA B 394 1555 1555 2.43 LINK NA NA B 394 O HOH B 403 1555 1555 2.16 CISPEP 1 PRO A 113 PRO A 114 0 -2.06 CISPEP 2 PRO B 113 PRO B 114 0 2.43 SITE 1 AC1 10 THR A 20 TYR A 58 TYR A 82 ALA A 83 SITE 2 AC1 10 THR A 84 ALA A 104 SER A 105 TYR A 126 SITE 3 AC1 10 PHE A 155 TYR A 232 SITE 1 AC2 5 THR A 20 SER A 21 ASP A 22 SER A 182 SITE 2 AC2 5 VAL A 207 SITE 1 AC3 5 ASP A 344 THR A 351 GLY A 352 GLU A 354 SITE 2 AC3 5 HOH A 396 SITE 1 AC4 9 TYR B 58 TYR B 82 ALA B 83 THR B 84 SITE 2 AC4 9 ALA B 104 SER B 105 TYR B 126 PHE B 155 SITE 3 AC4 9 TYR B 232 SITE 1 AC5 6 GLY B 18 THR B 20 SER B 21 ASP B 22 SITE 2 AC5 6 SER B 182 VAL B 207 SITE 1 AC6 5 ASP B 344 THR B 351 GLY B 352 GLU B 354 SITE 2 AC6 5 HOH B 403 CRYST1 76.708 83.176 122.002 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008197 0.00000