HEADER HYDROLASE 29-JAN-10 3LLU TITLE CRYSTAL STRUCTURE OF THE NUCLEOTIDE-BINDING DOMAIN OF RAS-RELATED GTP- TITLE 2 BINDING PROTEIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED GTP-BINDING PROTEIN C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RAG C, RAGC, GTPASE-INTERACTING PROTEIN 2, TIB929; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RRAGC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, CYTOPLASM, GTP-BINDING, KEYWDS 2 NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.NEDYALKOVA,W.TEMPEL,Y.TONG,L.CROMBET,N.ZHONG,X.GUAN,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 3 06-SEP-23 3LLU 1 REMARK SEQADV LINK REVDAT 2 01-NOV-17 3LLU 1 REMARK REVDAT 1 09-FEB-10 3LLU 0 JRNL AUTH L.NEDYALKOVA,W.TEMPEL,Y.TONG,L.CROMBET,N.ZHONG,X.GUAN, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV, JRNL AUTH 3 H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE NUCLEOTIDE-BINDING DOMAIN OF JRNL TITL 2 RAS-RELATED GTP-BINDING PROTEIN C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1811 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2532 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28200 REMARK 3 B22 (A**2) : -0.28200 REMARK 3 B33 (A**2) : 0.56300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.644 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1600 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1066 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2188 ; 1.515 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2607 ; 0.941 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 201 ; 5.517 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;33.240 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;11.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 7.143 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1789 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 340 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 931 ; 1.263 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 373 ; 0.407 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1520 ; 1.918 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 669 ; 3.197 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 657 ; 4.536 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2666 ; 1.169 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1668 11.7144 26.7548 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: 0.0214 REMARK 3 T33: 0.0246 T12: -0.0029 REMARK 3 T13: 0.0096 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.7053 L22: 2.1511 REMARK 3 L33: 1.4093 L12: 0.2655 REMARK 3 L13: 0.0425 L23: -0.0752 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: -0.0319 S13: -0.0128 REMARK 3 S21: 0.0828 S22: -0.0207 S23: 0.1116 REMARK 3 S31: 0.0990 S32: -0.1176 S33: -0.0028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED. REMARK 3 ARP/WARP, COOT AND THE MOLPROBITY SERVER WERE ALSO USED DURING REMARK 3 REFINEMENT. REMARK 4 REMARK 4 3LLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC Q315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36466 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.81600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Q3F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 0.2M SODIUM REMARK 280 CHLORIDE, 0.1M HEPES. 1:100 (W/W) PAPAIN AND GMPPNP WERE ALSO REMARK 280 ADDED. PLEASE NOTE: MASS SPECTRAL ANALYSIS OF TEV PROTEASE REMARK 280 DIGEST PRIOR TO CRYSTALLIZATION SUGGESTED THAT REMOVAL OF THE REMARK 280 HIS-TAG WAS INCOMPLETE EVEN AFTER 2 DAYS. HOWEVER, WITHOUT TEV REMARK 280 PROTEASE TREATMENT NO CRYSTALS WERE OBTAINED USING OTHERWISE REMARK 280 IDENTICAL CRYSTALLIZATION CONDITIONS. ALSO NOTE THE PRESENCE OF REMARK 280 PAPAIN IN THE CRYSTALLIZATION DROP., PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.11000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.11000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.09100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.11000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.11000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.09100 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 36.11000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 36.11000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.09100 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 36.11000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 36.11000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.09100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 72.22000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 72.22000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 72.22000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 72.22000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 42 REMARK 465 HIS A 43 REMARK 465 HIS A 44 REMARK 465 HIS A 45 REMARK 465 HIS A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 SER A 49 REMARK 465 SER A 50 REMARK 465 GLY A 51 REMARK 465 ARG A 52 REMARK 465 GLU A 53 REMARK 465 ASN A 54 REMARK 465 LEU A 55 REMARK 465 TYR A 56 REMARK 465 PHE A 57 REMARK 465 GLN A 58 REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ARG A 71 NE CZ NH1 NH2 REMARK 470 LYS A 98 CD CE NZ REMARK 470 SER A 105 OG REMARK 470 THR A 127 OG1 CG2 REMARK 470 GLU A 190 CD OE1 OE2 REMARK 470 LYS A 210 CE NZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 41 O REMARK 620 2 SER A 75 OG 88.2 REMARK 620 3 THR A 96 OG1 89.9 85.1 REMARK 620 4 HOH A 243 O 174.2 86.0 89.5 REMARK 620 5 GNP A 501 O1B 88.1 94.2 177.9 92.4 REMARK 620 6 GNP A 501 O2G 90.4 172.1 87.2 95.4 93.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 DBREF 3LLU A 60 237 UNP Q9HB90 RRAGC_HUMAN 60 237 SEQADV 3LLU MET A 42 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU HIS A 43 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU HIS A 44 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU HIS A 45 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU HIS A 46 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU HIS A 47 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU HIS A 48 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU SER A 49 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU SER A 50 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU GLY A 51 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU ARG A 52 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU GLU A 53 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU ASN A 54 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU LEU A 55 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU TYR A 56 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU PHE A 57 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU GLN A 58 UNP Q9HB90 EXPRESSION TAG SEQADV 3LLU GLY A 59 UNP Q9HB90 EXPRESSION TAG SEQRES 1 A 196 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 196 LEU TYR PHE GLN GLY SER LYS PRO ARG ILE LEU LEU MET SEQRES 3 A 196 GLY LEU ARG ARG SER GLY LYS SER SER ILE GLN LYS VAL SEQRES 4 A 196 VAL PHE HIS LYS MET SER PRO ASN GLU THR LEU PHE LEU SEQRES 5 A 196 GLU SER THR ASN LYS ILE TYR LYS ASP ASP ILE SER ASN SEQRES 6 A 196 SER SER PHE VAL ASN PHE GLN ILE TRP ASP PHE PRO GLY SEQRES 7 A 196 GLN MET ASP PHE PHE ASP PRO THR PHE ASP TYR GLU MET SEQRES 8 A 196 ILE PHE ARG GLY THR GLY ALA LEU ILE TYR VAL ILE ASP SEQRES 9 A 196 ALA GLN ASP ASP TYR MET GLU ALA LEU THR ARG LEU HIS SEQRES 10 A 196 ILE THR VAL SER LYS ALA TYR LYS VAL ASN PRO ASP MET SEQRES 11 A 196 ASN PHE GLU VAL PHE ILE HIS LYS VAL ASP GLY LEU SER SEQRES 12 A 196 ASP ASP HIS LYS ILE GLU THR GLN ARG ASP ILE HIS GLN SEQRES 13 A 196 ARG ALA ASN ASP ASP LEU ALA ASP ALA GLY LEU GLU LYS SEQRES 14 A 196 LEU HIS LEU SER PHE TYR LEU THR SER ILE TYR ASP HIS SEQRES 15 A 196 SER ILE PHE GLU ALA PHE SER LYS VAL VAL GLN LYS LEU SEQRES 16 A 196 ILE HET GNP A 501 32 HET MG A 502 1 HET UNX A 1 1 HET UNX A 2 1 HET UNX A 3 1 HET UNX A 4 1 HET UNX A 5 1 HET UNX A 6 1 HET UNX A 7 1 HET UNX A 8 1 HET UNX A 9 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 UNX 9(X) FORMUL 13 HOH *85(H2 O) HELIX 1 1 GLY A 73 HIS A 83 1 11 HELIX 2 2 SER A 86 LEU A 93 5 8 HELIX 3 3 ASP A 129 GLY A 136 1 8 HELIX 4 4 TYR A 150 ASN A 168 1 19 HELIX 5 5 VAL A 180 LEU A 183 5 4 HELIX 6 6 SER A 184 ALA A 206 1 23 HELIX 7 7 HIS A 223 LEU A 236 1 14 SHEET 1 A 6 TYR A 100 ILE A 104 0 SHEET 2 A 6 PHE A 112 ASP A 116 -1 O ILE A 114 N ASP A 102 SHEET 3 A 6 ARG A 63 GLY A 68 1 N LEU A 66 O TRP A 115 SHEET 4 A 6 ALA A 139 ASP A 145 1 O ILE A 141 N LEU A 65 SHEET 5 A 6 ASN A 172 HIS A 178 1 O PHE A 176 N ILE A 144 SHEET 6 A 6 LEU A 213 THR A 218 1 O TYR A 216 N ILE A 177 LINK O HOH A 41 MG MG A 502 1555 1555 2.14 LINK OG SER A 75 MG MG A 502 1555 1555 2.08 LINK OG1 THR A 96 MG MG A 502 1555 1555 2.11 LINK O HOH A 243 MG MG A 502 1555 1555 2.05 LINK O1B GNP A 501 MG MG A 502 1555 1555 2.04 LINK O2G GNP A 501 MG MG A 502 1555 1555 2.04 SITE 1 AC1 27 HOH A 27 HOH A 28 HOH A 38 HOH A 41 SITE 2 AC1 27 ARG A 70 ARG A 71 SER A 72 GLY A 73 SITE 3 AC1 27 LYS A 74 SER A 75 SER A 76 THR A 90 SITE 4 AC1 27 LEU A 91 SER A 95 THR A 96 GLY A 119 SITE 5 AC1 27 GLN A 147 HIS A 178 LYS A 179 ASP A 181 SITE 6 AC1 27 SER A 219 ILE A 220 HOH A 243 HOH A 247 SITE 7 AC1 27 HOH A 258 HOH A 285 MG A 502 SITE 1 AC2 5 HOH A 41 SER A 75 THR A 96 HOH A 243 SITE 2 AC2 5 GNP A 501 CRYST1 72.220 72.220 72.182 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013847 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013854 0.00000