HEADER TRANSFERASE 29-JAN-10 3LM5 TITLE CRYSTAL STRUCTURE OF HUMAN SERINE/THREONINE KINASE 17B (STK17B) IN TITLE 2 COMPLEX WITH QUERCETIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE 17B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: STK17B; COMPND 5 SYNONYM: DAP KINASE-RELATED APOPTOSIS-INDUCING PROTEIN KINASE 2; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DRAK2, STK17B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS STK17B, SERINE/THREONINE KINASE 17B, DRAK2, DAP KINASE RELATED KEYWDS 2 APOPTOSIS-INDUCING PROTEIN KINASE 2, DEATH-ASSOCIATED PROTEIN KEYWDS 3 KINASE-RELATED 2, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, SGC, APOPTOSIS, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, KEYWDS 5 NUCLEUS, PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, KEYWDS 6 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,M.SOUNDARARAJAN,P.RELLOS,O.FEDOROV,C.PHILLIPS,J.WANG, AUTHOR 2 E.HAPKA,P.FILIPPAKOPOULOS,A.CHAIKUAD,A.C.W.PIKE,L.CARPENTER, AUTHOR 3 M.VOLLMAR,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS, AUTHOR 4 S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 06-SEP-23 3LM5 1 REMARK REVDAT 4 13-JAN-21 3LM5 1 JRNL REMARK SEQADV REVDAT 3 01-NOV-17 3LM5 1 REMARK REVDAT 2 13-JUL-11 3LM5 1 VERSN REVDAT 1 16-MAR-10 3LM5 0 JRNL AUTH A.PICADO,A.CHAIKUAD,C.I.WELLS,S.SHRESTHA,W.J.ZUERCHER, JRNL AUTH 2 J.E.PICKETT,F.E.KWARCINSKI,P.SINHA,C.S.DE SILVA,R.ZUTSHI, JRNL AUTH 3 S.LIU,N.KANNAN,S.KNAPP,D.H.DREWRY,T.M.WILLSON JRNL TITL A CHEMICAL PROBE FOR DARK KINASE STK17B DERIVES ITS POTENCY JRNL TITL 2 AND HIGH SELECTIVITY THROUGH A UNIQUE P-LOOP CONFORMATION. JRNL REF J.MED.CHEM. V. 63 14626 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 33215924 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01174 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 16601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 894 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1258 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.271 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.051 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2258 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1488 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3068 ; 1.457 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3640 ; 0.875 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 5.511 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;35.170 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;14.064 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.689 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2490 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 436 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1368 ; 5.641 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 550 ; 2.282 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2219 ; 7.133 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 890 ; 9.754 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 848 ;10.466 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9586 -4.6301 -3.3583 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.0750 REMARK 3 T33: 0.0384 T12: 0.0129 REMARK 3 T13: -0.0488 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 4.5727 L22: 4.3578 REMARK 3 L33: 2.7887 L12: 0.7863 REMARK 3 L13: -0.6551 L23: 0.9847 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: 0.1465 S13: -0.0489 REMARK 3 S21: -0.0131 S22: 0.0927 S23: 0.1317 REMARK 3 S31: 0.1989 S32: 0.0018 S33: -0.0285 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0823 8.0734 8.3119 REMARK 3 T TENSOR REMARK 3 T11: 0.0962 T22: 0.1325 REMARK 3 T33: 0.0675 T12: 0.0026 REMARK 3 T13: -0.0189 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.7583 L22: 3.5075 REMARK 3 L33: 1.9701 L12: -1.6244 REMARK 3 L13: -1.0570 L23: 2.1768 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: 0.0111 S13: -0.0898 REMARK 3 S21: 0.2047 S22: 0.0215 S23: 0.1874 REMARK 3 S31: 0.0560 S32: -0.1822 S33: 0.0508 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0753 24.7851 6.2447 REMARK 3 T TENSOR REMARK 3 T11: 0.0534 T22: 0.0662 REMARK 3 T33: 0.0871 T12: 0.0300 REMARK 3 T13: 0.0196 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 3.8728 L22: 2.4347 REMARK 3 L33: 4.3129 L12: -0.0659 REMARK 3 L13: 0.0907 L23: 0.4516 REMARK 3 S TENSOR REMARK 3 S11: 0.0892 S12: 0.2190 S13: 0.1020 REMARK 3 S21: -0.1519 S22: 0.0458 S23: -0.1334 REMARK 3 S31: -0.0945 S32: 0.1376 S33: -0.1351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057447. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18152 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 52.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.90200 REMARK 200 R SYM FOR SHELL (I) : 0.90200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3EHA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL; 0.1M BIS-TRIS PH 5.5; 25% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.65000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.82500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.47500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.65000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.47500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.82500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 THR A 17 REMARK 465 ALA A 127 REMARK 465 GLY A 187 REMARK 465 HIS A 188 REMARK 465 ALA A 189 REMARK 465 CYS A 190 REMARK 465 GLU A 191 REMARK 465 LEU A 192 REMARK 465 ARG A 193 REMARK 465 GLU A 194 REMARK 465 ILE A 195 REMARK 465 PHE A 302 REMARK 465 HIS A 303 REMARK 465 PRO A 304 REMARK 465 GLU A 305 REMARK 465 GLU A 306 REMARK 465 THR A 307 REMARK 465 SER A 308 REMARK 465 SER A 309 REMARK 465 SER A 310 REMARK 465 SER A 311 REMARK 465 GLN A 312 REMARK 465 THR A 313 REMARK 465 GLN A 314 REMARK 465 ASP A 315 REMARK 465 HIS A 316 REMARK 465 SER A 317 REMARK 465 VAL A 318 REMARK 465 ARG A 319 REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 GLU A 322 REMARK 465 ASP A 323 REMARK 465 LYS A 324 REMARK 465 THR A 325 REMARK 465 SER A 326 REMARK 465 LYS A 327 REMARK 465 SER A 328 REMARK 465 SER A 329 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 NZ REMARK 470 GLU A 76 CD OE1 OE2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 LEU A 126 CG CD1 CD2 REMARK 470 MET A 129 CG SD CE REMARK 470 MET A 196 CG SD CE REMARK 470 GLU A 257 CD OE1 OE2 REMARK 470 LYS A 276 CE NZ REMARK 470 GLU A 279 CD OE1 OE2 REMARK 470 LEU A 301 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 95 O HOH A 429 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 345 O HOH A 345 5655 2.02 REMARK 500 O HOH A 347 O HOH A 384 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 158 44.46 -151.92 REMARK 500 ASP A 179 64.02 62.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QUE A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EHA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DEATH ASSOCIATED PROTEIN KINASE COMPLEXED WITH REMARK 900 AMPPNP DBREF 3LM5 A 25 329 UNP O94768 ST17B_HUMAN 25 329 SEQADV 3LM5 MET A 3 UNP O94768 EXPRESSION TAG SEQADV 3LM5 HIS A 4 UNP O94768 EXPRESSION TAG SEQADV 3LM5 HIS A 5 UNP O94768 EXPRESSION TAG SEQADV 3LM5 HIS A 6 UNP O94768 EXPRESSION TAG SEQADV 3LM5 HIS A 7 UNP O94768 EXPRESSION TAG SEQADV 3LM5 HIS A 8 UNP O94768 EXPRESSION TAG SEQADV 3LM5 HIS A 9 UNP O94768 EXPRESSION TAG SEQADV 3LM5 SER A 10 UNP O94768 EXPRESSION TAG SEQADV 3LM5 SER A 11 UNP O94768 EXPRESSION TAG SEQADV 3LM5 GLY A 12 UNP O94768 EXPRESSION TAG SEQADV 3LM5 VAL A 13 UNP O94768 EXPRESSION TAG SEQADV 3LM5 ASP A 14 UNP O94768 EXPRESSION TAG SEQADV 3LM5 LEU A 15 UNP O94768 EXPRESSION TAG SEQADV 3LM5 GLY A 16 UNP O94768 EXPRESSION TAG SEQADV 3LM5 THR A 17 UNP O94768 EXPRESSION TAG SEQADV 3LM5 GLU A 18 UNP O94768 EXPRESSION TAG SEQADV 3LM5 ASN A 19 UNP O94768 EXPRESSION TAG SEQADV 3LM5 LEU A 20 UNP O94768 EXPRESSION TAG SEQADV 3LM5 TYR A 21 UNP O94768 EXPRESSION TAG SEQADV 3LM5 PHE A 22 UNP O94768 EXPRESSION TAG SEQADV 3LM5 GLN A 23 UNP O94768 EXPRESSION TAG SEQADV 3LM5 SER A 24 UNP O94768 EXPRESSION TAG SEQRES 1 A 327 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 327 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU ASN PHE SEQRES 3 A 327 ASN ASN PHE TYR ILE LEU THR SER LYS GLU LEU GLY ARG SEQRES 4 A 327 GLY LYS PHE ALA VAL VAL ARG GLN CYS ILE SER LYS SER SEQRES 5 A 327 THR GLY GLN GLU TYR ALA ALA LYS PHE LEU LYS LYS ARG SEQRES 6 A 327 ARG ARG GLY GLN ASP CYS ARG ALA GLU ILE LEU HIS GLU SEQRES 7 A 327 ILE ALA VAL LEU GLU LEU ALA LYS SER CYS PRO ARG VAL SEQRES 8 A 327 ILE ASN LEU HIS GLU VAL TYR GLU ASN THR SER GLU ILE SEQRES 9 A 327 ILE LEU ILE LEU GLU TYR ALA ALA GLY GLY GLU ILE PHE SEQRES 10 A 327 SER LEU CYS LEU PRO GLU LEU ALA GLU MET VAL SER GLU SEQRES 11 A 327 ASN ASP VAL ILE ARG LEU ILE LYS GLN ILE LEU GLU GLY SEQRES 12 A 327 VAL TYR TYR LEU HIS GLN ASN ASN ILE VAL HIS LEU ASP SEQRES 13 A 327 LEU LYS PRO GLN ASN ILE LEU LEU SER SER ILE TYR PRO SEQRES 14 A 327 LEU GLY ASP ILE LYS ILE VAL ASP PHE GLY MET SER ARG SEQRES 15 A 327 LYS ILE GLY HIS ALA CYS GLU LEU ARG GLU ILE MET GLY SEQRES 16 A 327 THR PRO GLU TYR LEU ALA PRO GLU ILE LEU ASN TYR ASP SEQRES 17 A 327 PRO ILE THR THR ALA THR ASP MET TRP ASN ILE GLY ILE SEQRES 18 A 327 ILE ALA TYR MET LEU LEU THR HIS THR SER PRO PHE VAL SEQRES 19 A 327 GLY GLU ASP ASN GLN GLU THR TYR LEU ASN ILE SER GLN SEQRES 20 A 327 VAL ASN VAL ASP TYR SER GLU GLU THR PHE SER SER VAL SEQRES 21 A 327 SER GLN LEU ALA THR ASP PHE ILE GLN SER LEU LEU VAL SEQRES 22 A 327 LYS ASN PRO GLU LYS ARG PRO THR ALA GLU ILE CYS LEU SEQRES 23 A 327 SER HIS SER TRP LEU GLN GLN TRP ASP PHE GLU ASN LEU SEQRES 24 A 327 PHE HIS PRO GLU GLU THR SER SER SER SER GLN THR GLN SEQRES 25 A 327 ASP HIS SER VAL ARG SER SER GLU ASP LYS THR SER LYS SEQRES 26 A 327 SER SER HET QUE A 1 22 HETNAM QUE 3,5,7,3',4'-PENTAHYDROXYFLAVONE HETSYN QUE QUERCETIN FORMUL 2 QUE C15 H10 O7 FORMUL 3 HOH *118(H2 O) HELIX 1 1 SER A 24 PHE A 31 1 8 HELIX 2 2 CYS A 73 ALA A 87 1 15 HELIX 3 3 PHE A 119 LEU A 123 5 5 HELIX 4 4 SER A 131 ASN A 152 1 22 HELIX 5 5 LYS A 160 GLN A 162 5 3 HELIX 6 6 ASP A 179 SER A 183 5 5 HELIX 7 7 THR A 198 LEU A 202 5 5 HELIX 8 8 ALA A 203 ASN A 208 1 6 HELIX 9 9 THR A 214 HIS A 231 1 18 HELIX 10 10 ASP A 239 VAL A 250 1 12 HELIX 11 11 SER A 263 LEU A 274 1 12 HELIX 12 12 ASN A 277 ARG A 281 5 5 HELIX 13 13 THR A 283 LEU A 288 1 6 HELIX 14 14 SER A 289 GLN A 294 5 6 SHEET 1 A 5 TYR A 32 GLY A 42 0 SHEET 2 A 5 ALA A 45 SER A 52 -1 O VAL A 47 N GLY A 40 SHEET 3 A 5 GLU A 58 LYS A 65 -1 O ALA A 61 N ARG A 48 SHEET 4 A 5 GLU A 105 GLU A 111 -1 O LEU A 110 N ALA A 60 SHEET 5 A 5 LEU A 96 GLU A 101 -1 N TYR A 100 O ILE A 107 SHEET 1 B 2 ARG A 67 ARG A 68 0 SHEET 2 B 2 GLN A 71 ASP A 72 -1 O GLN A 71 N ARG A 68 SHEET 1 C 3 GLY A 116 GLU A 117 0 SHEET 2 C 3 ILE A 164 LEU A 166 -1 O LEU A 166 N GLY A 116 SHEET 3 C 3 ILE A 175 ILE A 177 -1 O LYS A 176 N LEU A 165 SHEET 1 D 2 ILE A 154 VAL A 155 0 SHEET 2 D 2 ARG A 184 LYS A 185 -1 O ARG A 184 N VAL A 155 CISPEP 1 TYR A 170 PRO A 171 0 -2.12 SITE 1 AC1 12 ALA A 60 LYS A 62 GLU A 80 ILE A 94 SITE 2 AC1 12 LEU A 110 GLU A 111 TYR A 112 ALA A 113 SITE 3 AC1 12 LEU A 165 VAL A 178 ASP A 179 PHE A 180 CRYST1 83.380 83.380 115.300 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008673 0.00000