data_3LMN # _entry.id 3LMN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LMN pdb_00003lmn 10.2210/pdb3lmn/pdb RCSB RCSB057465 ? ? WWPDB D_1000057465 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1W6V _pdbx_database_related.details 'SOLUTION STRUCTURE OF THE DUSP DOMAIN OF HUSP15' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LMN _pdbx_database_status.recvd_initial_deposition_date 2010-01-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Walker, J.R.' 1 'Asinas, A.' 2 'Avvakumov, G.V.' 3 'Alenkin, D.' 4 'Weigelt, J.' 5 'Bountra, C.' 6 'Edwards, A.M.' 7 'Arrowsmith, C.H.' 8 'Bochkarev, A.' 9 'Dhe-Paganon, S.' 10 # _citation.id primary _citation.title 'Crystal Structure of the Human Ubiquitin-Specific Protease 15 DUSP Domain' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Walker, J.R.' 1 ? primary 'Asinas, A.' 2 ? primary 'Avvakumov, G.V.' 3 ? primary 'Alenkin, D.' 4 ? primary 'Weigelt, J.' 5 ? primary 'Bountra, C.' 6 ? primary 'Edwards, A.M.' 7 ? primary 'Arrowsmith, C.H.' 8 ? primary 'Bochkarev, A.' 9 ? primary 'Dhe-Paganon, S.' 10 ? # _cell.entry_id 3LMN _cell.length_a 138.174 _cell.length_b 138.174 _cell.length_c 132.114 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LMN _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin carboxyl-terminal hydrolase 15' 15528.555 2 3.1.2.15 ? 'DUSP DOMAIN, RESIDUES 1-133' ? 2 non-polymer syn 'FORMIC ACID' 46.025 1 ? ? ? ? 3 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ? 4 water nat water 18.015 204 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ubiquitin thioesterase 15, Ubiquitin-specific-processing protease 15, Deubiquitinating enzyme 15, Unph-2, Unph4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSMAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQS LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSMAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQS LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 ALA n 1 5 GLU n 1 6 GLY n 1 7 GLY n 1 8 ALA n 1 9 ALA n 1 10 ASP n 1 11 LEU n 1 12 ASP n 1 13 THR n 1 14 GLN n 1 15 ARG n 1 16 SER n 1 17 ASP n 1 18 ILE n 1 19 ALA n 1 20 THR n 1 21 LEU n 1 22 LEU n 1 23 LYS n 1 24 THR n 1 25 SER n 1 26 LEU n 1 27 ARG n 1 28 LYS n 1 29 GLY n 1 30 ASP n 1 31 THR n 1 32 TRP n 1 33 TYR n 1 34 LEU n 1 35 VAL n 1 36 ASP n 1 37 SER n 1 38 ARG n 1 39 TRP n 1 40 PHE n 1 41 LYS n 1 42 GLN n 1 43 TRP n 1 44 LYS n 1 45 LYS n 1 46 TYR n 1 47 VAL n 1 48 GLY n 1 49 PHE n 1 50 ASP n 1 51 SER n 1 52 TRP n 1 53 ASP n 1 54 LYS n 1 55 TYR n 1 56 GLN n 1 57 MET n 1 58 GLY n 1 59 ASP n 1 60 GLN n 1 61 ASN n 1 62 VAL n 1 63 TYR n 1 64 PRO n 1 65 GLY n 1 66 PRO n 1 67 ILE n 1 68 ASP n 1 69 ASN n 1 70 SER n 1 71 GLY n 1 72 LEU n 1 73 LEU n 1 74 LYS n 1 75 ASP n 1 76 GLY n 1 77 ASP n 1 78 ALA n 1 79 GLN n 1 80 SER n 1 81 LEU n 1 82 LYS n 1 83 GLU n 1 84 HIS n 1 85 LEU n 1 86 ILE n 1 87 ASP n 1 88 GLU n 1 89 LEU n 1 90 ASP n 1 91 TYR n 1 92 ILE n 1 93 LEU n 1 94 LEU n 1 95 PRO n 1 96 THR n 1 97 GLU n 1 98 GLY n 1 99 TRP n 1 100 ASN n 1 101 LYS n 1 102 LEU n 1 103 VAL n 1 104 SER n 1 105 TRP n 1 106 TYR n 1 107 THR n 1 108 LEU n 1 109 MET n 1 110 GLU n 1 111 GLY n 1 112 GLN n 1 113 GLU n 1 114 PRO n 1 115 ILE n 1 116 ALA n 1 117 ARG n 1 118 LYS n 1 119 VAL n 1 120 VAL n 1 121 GLU n 1 122 GLN n 1 123 GLY n 1 124 MET n 1 125 PHE n 1 126 VAL n 1 127 LYS n 1 128 HIS n 1 129 CYS n 1 130 LYS n 1 131 VAL n 1 132 GLU n 1 133 VAL n 1 134 TYR n 1 135 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KIAA0529, USP15' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-V2R' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28A-LIC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBP15_HUMAN _struct_ref.pdbx_db_accession Q9Y4E8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQSLK EHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LMN A 3 ? 135 ? Q9Y4E8 1 ? 133 ? 1 133 2 1 3LMN B 3 ? 135 ? Q9Y4E8 1 ? 133 ? 1 133 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LMN GLY A 1 ? UNP Q9Y4E8 ? ? 'expression tag' -1 1 1 3LMN SER A 2 ? UNP Q9Y4E8 ? ? 'expression tag' 0 2 2 3LMN GLY B 1 ? UNP Q9Y4E8 ? ? 'expression tag' -1 3 2 3LMN SER B 2 ? UNP Q9Y4E8 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LMN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.75 _exptl_crystal.density_percent_sol 73.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291.1 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 3.8 _exptl_crystal_grow.pdbx_details ;Crystals of the dusp domain of usp15 were grown at 291.1 K using the sitting drop method by mixing equal volumes of protein solution (15 mg/ml) and crystallization buffer (2.0 M ammonium formate, 0.1 M sodium acetate, pH 3.8.) The crystals were cryoprotected by immersion in well solution supplemented with 20% (v/v) glycerol prior to dunking and storage in liquid nitrogen., VAPOR DIFFUSION, SITTING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2010-01-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54178 _diffrn_source.pdbx_wavelength_list 1.54178 # _reflns.entry_id 3LMN _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 2.15 _reflns.number_obs 35029 _reflns.number_all 35029 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.083 _reflns.pdbx_netI_over_sigmaI 35.89 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 14.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.19 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.800 _reflns_shell.meanI_over_sigI_obs 3.62 _reflns_shell.pdbx_redundancy 14.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1727 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3LMN _refine.ls_number_reflns_obs 33132 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.52 _refine.ls_d_res_high 2.15 _refine.ls_percent_reflns_obs 99.95 _refine.ls_R_factor_obs 0.18442 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18337 _refine.ls_R_factor_R_free 0.20401 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1749 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.B_iso_mean 41.241 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES : WITH TLS ADDED.' _refine.pdbx_starting_model 'PDB ENTRY 3JYU' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.127 _refine.pdbx_overall_ESU_R_Free 0.119 _refine.overall_SU_ML 0.077 _refine.overall_SU_B 6.484 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2116 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 204 _refine_hist.number_atoms_total 2327 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 19.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 2222 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.209 1.953 ? 3014 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.518 5.000 ? 267 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.148 24.857 ? 105 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.805 15.000 ? 394 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.241 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 314 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1699 'X-RAY DIFFRACTION' ? r_mcbond_it 0.555 1.500 ? 1321 'X-RAY DIFFRACTION' ? r_mcangle_it 1.040 2.000 ? 2121 'X-RAY DIFFRACTION' ? r_scbond_it 1.877 3.000 ? 901 'X-RAY DIFFRACTION' ? r_scangle_it 2.848 4.500 ? 893 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.150 _refine_ls_shell.d_res_low 2.205 _refine_ls_shell.number_reflns_R_work 2376 _refine_ls_shell.R_factor_R_work 0.211 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.232 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 130 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LMN _struct.title 'Oligomeric structure of the DUSP domain of human USP15' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LMN _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;HYDROLASE, UCH, USP, DUB, DEUBIQUITYLATION, DEUBIQUITINATING ENZYME, UBIQUITIN, UBIQUITIN SPECIFIC PROTEASE, UBIQUITIN CARBOXYTERMINAL HYDROLASE, CLEAVAGE, USP15, DUB15, UBP15, ENDOPEPTIDASE, THIOLESTERASE, DUSP, DOMAIN-SWAPPING, STRUCTURAL GENOMICS CONSORTIUM (SGC), Acetylation, Alternative splicing, Phosphoprotein, Protease, Thiol protease, Ubl conjugation pathway ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? LYS A 23 ? ASP A 8 LYS A 21 1 ? 14 HELX_P HELX_P2 2 SER A 37 ? GLY A 48 ? SER A 35 GLY A 46 1 ? 12 HELX_P HELX_P3 3 ASP A 59 ? TYR A 63 ? ASP A 57 TYR A 61 5 ? 5 HELX_P HELX_P4 4 ASN A 69 ? LEU A 73 ? ASN A 67 LEU A 71 5 ? 5 HELX_P HELX_P5 5 THR A 96 ? THR A 107 ? THR A 94 THR A 105 1 ? 12 HELX_P HELX_P6 6 ASP B 10 ? LEU B 22 ? ASP B 8 LEU B 20 1 ? 13 HELX_P HELX_P7 7 SER B 37 ? GLY B 48 ? SER B 35 GLY B 46 1 ? 12 HELX_P HELX_P8 8 ASP B 50 ? LYS B 54 ? ASP B 48 LYS B 52 5 ? 5 HELX_P HELX_P9 9 ASP B 59 ? TYR B 63 ? ASP B 57 TYR B 61 5 ? 5 HELX_P HELX_P10 10 ASN B 69 ? GLY B 71 ? ASN B 67 GLY B 69 5 ? 3 HELX_P HELX_P11 11 THR B 96 ? THR B 107 ? THR B 94 THR B 105 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 91 ? PRO A 95 ? TYR A 89 PRO A 93 A 2 THR A 31 ? ASP A 36 ? THR A 29 ASP A 34 A 3 ALA A 116 ? LYS A 118 ? ALA A 114 LYS A 116 B 1 TYR B 91 ? PRO B 95 ? TYR B 89 PRO B 93 B 2 THR B 31 ? ASP B 36 ? THR B 29 ASP B 34 B 3 ALA B 116 ? LYS B 118 ? ALA B 114 LYS B 116 C 1 LEU B 73 ? LYS B 74 ? LEU B 71 LYS B 72 C 2 SER B 80 ? LEU B 81 ? SER B 78 LEU B 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 94 ? O LEU A 92 N TYR A 33 ? N TYR A 31 A 2 3 N TRP A 32 ? N TRP A 30 O ARG A 117 ? O ARG A 115 B 1 2 O LEU B 94 ? O LEU B 92 N TYR B 33 ? N TYR B 31 B 2 3 N TRP B 32 ? N TRP B 30 O ARG B 117 ? O ARG B 115 C 1 2 N LYS B 74 ? N LYS B 72 O SER B 80 ? O SER B 78 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMT 134 ? 3 'BINDING SITE FOR RESIDUE FMT A 134' AC2 Software B ACY 134 ? 4 'BINDING SITE FOR RESIDUE ACY B 134' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLN A 79 ? GLN A 77 . ? 1_555 ? 2 AC1 3 ARG A 117 ? ARG A 115 . ? 1_555 ? 3 AC1 3 HOH E . ? HOH A 175 . ? 1_555 ? 4 AC2 4 LYS B 44 ? LYS B 42 . ? 10_655 ? 5 AC2 4 LYS B 44 ? LYS B 42 . ? 1_555 ? 6 AC2 4 ASP B 50 ? ASP B 48 . ? 1_555 ? 7 AC2 4 GLU B 88 ? GLU B 86 . ? 10_655 ? # _database_PDB_matrix.entry_id 3LMN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LMN _atom_sites.fract_transf_matrix[1][1] 0.007237 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007237 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007569 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 MET 3 1 ? ? ? A . n A 1 4 ALA 4 2 2 ALA ALA A . n A 1 5 GLU 5 3 3 GLU GLU A . n A 1 6 GLY 6 4 4 GLY GLY A . n A 1 7 GLY 7 5 5 GLY GLY A . n A 1 8 ALA 8 6 6 ALA ALA A . n A 1 9 ALA 9 7 7 ALA ALA A . n A 1 10 ASP 10 8 8 ASP ASP A . n A 1 11 LEU 11 9 9 LEU LEU A . n A 1 12 ASP 12 10 10 ASP ASP A . n A 1 13 THR 13 11 11 THR THR A . n A 1 14 GLN 14 12 12 GLN GLN A . n A 1 15 ARG 15 13 13 ARG ARG A . n A 1 16 SER 16 14 14 SER SER A . n A 1 17 ASP 17 15 15 ASP ASP A . n A 1 18 ILE 18 16 16 ILE ILE A . n A 1 19 ALA 19 17 17 ALA ALA A . n A 1 20 THR 20 18 18 THR THR A . n A 1 21 LEU 21 19 19 LEU LEU A . n A 1 22 LEU 22 20 20 LEU LEU A . n A 1 23 LYS 23 21 21 LYS LYS A . n A 1 24 THR 24 22 22 THR THR A . n A 1 25 SER 25 23 23 SER SER A . n A 1 26 LEU 26 24 24 LEU LEU A . n A 1 27 ARG 27 25 25 ARG ARG A . n A 1 28 LYS 28 26 26 LYS LYS A . n A 1 29 GLY 29 27 27 GLY GLY A . n A 1 30 ASP 30 28 28 ASP ASP A . n A 1 31 THR 31 29 29 THR THR A . n A 1 32 TRP 32 30 30 TRP TRP A . n A 1 33 TYR 33 31 31 TYR TYR A . n A 1 34 LEU 34 32 32 LEU LEU A . n A 1 35 VAL 35 33 33 VAL VAL A . n A 1 36 ASP 36 34 34 ASP ASP A . n A 1 37 SER 37 35 35 SER SER A . n A 1 38 ARG 38 36 36 ARG ARG A . n A 1 39 TRP 39 37 37 TRP TRP A . n A 1 40 PHE 40 38 38 PHE PHE A . n A 1 41 LYS 41 39 39 LYS LYS A . n A 1 42 GLN 42 40 40 GLN GLN A . n A 1 43 TRP 43 41 41 TRP TRP A . n A 1 44 LYS 44 42 42 LYS LYS A . n A 1 45 LYS 45 43 43 LYS LYS A . n A 1 46 TYR 46 44 44 TYR TYR A . n A 1 47 VAL 47 45 45 VAL VAL A . n A 1 48 GLY 48 46 46 GLY GLY A . n A 1 49 PHE 49 47 47 PHE PHE A . n A 1 50 ASP 50 48 48 ASP ASP A . n A 1 51 SER 51 49 49 SER SER A . n A 1 52 TRP 52 50 50 TRP TRP A . n A 1 53 ASP 53 51 51 ASP ASP A . n A 1 54 LYS 54 52 52 LYS LYS A . n A 1 55 TYR 55 53 53 TYR TYR A . n A 1 56 GLN 56 54 54 GLN GLN A . n A 1 57 MET 57 55 55 MET MET A . n A 1 58 GLY 58 56 56 GLY GLY A . n A 1 59 ASP 59 57 57 ASP ASP A . n A 1 60 GLN 60 58 58 GLN GLN A . n A 1 61 ASN 61 59 59 ASN ASN A . n A 1 62 VAL 62 60 60 VAL VAL A . n A 1 63 TYR 63 61 61 TYR TYR A . n A 1 64 PRO 64 62 62 PRO PRO A . n A 1 65 GLY 65 63 63 GLY GLY A . n A 1 66 PRO 66 64 64 PRO PRO A . n A 1 67 ILE 67 65 65 ILE ILE A . n A 1 68 ASP 68 66 66 ASP ASP A . n A 1 69 ASN 69 67 67 ASN ASN A . n A 1 70 SER 70 68 68 SER SER A . n A 1 71 GLY 71 69 69 GLY GLY A . n A 1 72 LEU 72 70 70 LEU LEU A . n A 1 73 LEU 73 71 71 LEU LEU A . n A 1 74 LYS 74 72 72 LYS LYS A . n A 1 75 ASP 75 73 73 ASP ASP A . n A 1 76 GLY 76 74 74 GLY GLY A . n A 1 77 ASP 77 75 75 ASP ASP A . n A 1 78 ALA 78 76 76 ALA ALA A . n A 1 79 GLN 79 77 77 GLN GLN A . n A 1 80 SER 80 78 78 SER SER A . n A 1 81 LEU 81 79 79 LEU LEU A . n A 1 82 LYS 82 80 80 LYS LYS A . n A 1 83 GLU 83 81 81 GLU GLU A . n A 1 84 HIS 84 82 82 HIS HIS A . n A 1 85 LEU 85 83 83 LEU LEU A . n A 1 86 ILE 86 84 84 ILE ILE A . n A 1 87 ASP 87 85 85 ASP ASP A . n A 1 88 GLU 88 86 86 GLU GLU A . n A 1 89 LEU 89 87 87 LEU LEU A . n A 1 90 ASP 90 88 88 ASP ASP A . n A 1 91 TYR 91 89 89 TYR TYR A . n A 1 92 ILE 92 90 90 ILE ILE A . n A 1 93 LEU 93 91 91 LEU LEU A . n A 1 94 LEU 94 92 92 LEU LEU A . n A 1 95 PRO 95 93 93 PRO PRO A . n A 1 96 THR 96 94 94 THR THR A . n A 1 97 GLU 97 95 95 GLU GLU A . n A 1 98 GLY 98 96 96 GLY GLY A . n A 1 99 TRP 99 97 97 TRP TRP A . n A 1 100 ASN 100 98 98 ASN ASN A . n A 1 101 LYS 101 99 99 LYS LYS A . n A 1 102 LEU 102 100 100 LEU LEU A . n A 1 103 VAL 103 101 101 VAL VAL A . n A 1 104 SER 104 102 102 SER SER A . n A 1 105 TRP 105 103 103 TRP TRP A . n A 1 106 TYR 106 104 104 TYR TYR A . n A 1 107 THR 107 105 105 THR THR A . n A 1 108 LEU 108 106 106 LEU LEU A . n A 1 109 MET 109 107 107 MET MET A . n A 1 110 GLU 110 108 108 GLU GLU A . n A 1 111 GLY 111 109 109 GLY GLY A . n A 1 112 GLN 112 110 110 GLN GLN A . n A 1 113 GLU 113 111 111 GLU GLU A . n A 1 114 PRO 114 112 112 PRO PRO A . n A 1 115 ILE 115 113 113 ILE ILE A . n A 1 116 ALA 116 114 114 ALA ALA A . n A 1 117 ARG 117 115 115 ARG ARG A . n A 1 118 LYS 118 116 116 LYS LYS A . n A 1 119 VAL 119 117 117 VAL VAL A . n A 1 120 VAL 120 118 118 VAL VAL A . n A 1 121 GLU 121 119 119 GLU GLU A . n A 1 122 GLN 122 120 120 GLN GLN A . n A 1 123 GLY 123 121 121 GLY GLY A . n A 1 124 MET 124 122 122 MET MET A . n A 1 125 PHE 125 123 123 PHE PHE A . n A 1 126 VAL 126 124 124 VAL VAL A . n A 1 127 LYS 127 125 125 LYS LYS A . n A 1 128 HIS 128 126 126 HIS HIS A . n A 1 129 CYS 129 127 127 CYS CYS A . n A 1 130 LYS 130 128 128 LYS LYS A . n A 1 131 VAL 131 129 129 VAL VAL A . n A 1 132 GLU 132 130 130 GLU GLU A . n A 1 133 VAL 133 131 131 VAL VAL A . n A 1 134 TYR 134 132 132 TYR TYR A . n A 1 135 LEU 135 133 133 LEU LEU A . n B 1 1 GLY 1 -1 ? ? ? B . n B 1 2 SER 2 0 ? ? ? B . n B 1 3 MET 3 1 ? ? ? B . n B 1 4 ALA 4 2 ? ? ? B . n B 1 5 GLU 5 3 ? ? ? B . n B 1 6 GLY 6 4 ? ? ? B . n B 1 7 GLY 7 5 5 GLY GLY B . n B 1 8 ALA 8 6 6 ALA ALA B . n B 1 9 ALA 9 7 7 ALA ALA B . n B 1 10 ASP 10 8 8 ASP ASP B . n B 1 11 LEU 11 9 9 LEU LEU B . n B 1 12 ASP 12 10 10 ASP ASP B . n B 1 13 THR 13 11 11 THR THR B . n B 1 14 GLN 14 12 12 GLN GLN B . n B 1 15 ARG 15 13 13 ARG ARG B . n B 1 16 SER 16 14 14 SER SER B . n B 1 17 ASP 17 15 15 ASP ASP B . n B 1 18 ILE 18 16 16 ILE ILE B . n B 1 19 ALA 19 17 17 ALA ALA B . n B 1 20 THR 20 18 18 THR THR B . n B 1 21 LEU 21 19 19 LEU LEU B . n B 1 22 LEU 22 20 20 LEU LEU B . n B 1 23 LYS 23 21 21 LYS LYS B . n B 1 24 THR 24 22 22 THR THR B . n B 1 25 SER 25 23 23 SER SER B . n B 1 26 LEU 26 24 24 LEU LEU B . n B 1 27 ARG 27 25 25 ARG ARG B . n B 1 28 LYS 28 26 26 LYS LYS B . n B 1 29 GLY 29 27 27 GLY GLY B . n B 1 30 ASP 30 28 28 ASP ASP B . n B 1 31 THR 31 29 29 THR THR B . n B 1 32 TRP 32 30 30 TRP TRP B . n B 1 33 TYR 33 31 31 TYR TYR B . n B 1 34 LEU 34 32 32 LEU LEU B . n B 1 35 VAL 35 33 33 VAL VAL B . n B 1 36 ASP 36 34 34 ASP ASP B . n B 1 37 SER 37 35 35 SER SER B . n B 1 38 ARG 38 36 36 ARG ARG B . n B 1 39 TRP 39 37 37 TRP TRP B . n B 1 40 PHE 40 38 38 PHE PHE B . n B 1 41 LYS 41 39 39 LYS LYS B . n B 1 42 GLN 42 40 40 GLN GLN B . n B 1 43 TRP 43 41 41 TRP TRP B . n B 1 44 LYS 44 42 42 LYS LYS B . n B 1 45 LYS 45 43 43 LYS LYS B . n B 1 46 TYR 46 44 44 TYR TYR B . n B 1 47 VAL 47 45 45 VAL VAL B . n B 1 48 GLY 48 46 46 GLY GLY B . n B 1 49 PHE 49 47 47 PHE PHE B . n B 1 50 ASP 50 48 48 ASP ASP B . n B 1 51 SER 51 49 49 SER SER B . n B 1 52 TRP 52 50 50 TRP TRP B . n B 1 53 ASP 53 51 51 ASP ASP B . n B 1 54 LYS 54 52 52 LYS LYS B . n B 1 55 TYR 55 53 53 TYR TYR B . n B 1 56 GLN 56 54 54 GLN GLN B . n B 1 57 MET 57 55 55 MET MET B . n B 1 58 GLY 58 56 56 GLY GLY B . n B 1 59 ASP 59 57 57 ASP ASP B . n B 1 60 GLN 60 58 58 GLN GLN B . n B 1 61 ASN 61 59 59 ASN ASN B . n B 1 62 VAL 62 60 60 VAL VAL B . n B 1 63 TYR 63 61 61 TYR TYR B . n B 1 64 PRO 64 62 62 PRO PRO B . n B 1 65 GLY 65 63 63 GLY GLY B . n B 1 66 PRO 66 64 64 PRO PRO B . n B 1 67 ILE 67 65 65 ILE ILE B . n B 1 68 ASP 68 66 66 ASP ASP B . n B 1 69 ASN 69 67 67 ASN ASN B . n B 1 70 SER 70 68 68 SER SER B . n B 1 71 GLY 71 69 69 GLY GLY B . n B 1 72 LEU 72 70 70 LEU LEU B . n B 1 73 LEU 73 71 71 LEU LEU B . n B 1 74 LYS 74 72 72 LYS LYS B . n B 1 75 ASP 75 73 73 ASP ASP B . n B 1 76 GLY 76 74 74 GLY GLY B . n B 1 77 ASP 77 75 ? ? ? B . n B 1 78 ALA 78 76 76 ALA ALA B . n B 1 79 GLN 79 77 77 GLN GLN B . n B 1 80 SER 80 78 78 SER SER B . n B 1 81 LEU 81 79 79 LEU LEU B . n B 1 82 LYS 82 80 80 LYS LYS B . n B 1 83 GLU 83 81 81 GLU GLU B . n B 1 84 HIS 84 82 82 HIS HIS B . n B 1 85 LEU 85 83 83 LEU LEU B . n B 1 86 ILE 86 84 84 ILE ILE B . n B 1 87 ASP 87 85 85 ASP ASP B . n B 1 88 GLU 88 86 86 GLU GLU B . n B 1 89 LEU 89 87 87 LEU LEU B . n B 1 90 ASP 90 88 88 ASP ASP B . n B 1 91 TYR 91 89 89 TYR TYR B . n B 1 92 ILE 92 90 90 ILE ILE B . n B 1 93 LEU 93 91 91 LEU LEU B . n B 1 94 LEU 94 92 92 LEU LEU B . n B 1 95 PRO 95 93 93 PRO PRO B . n B 1 96 THR 96 94 94 THR THR B . n B 1 97 GLU 97 95 95 GLU GLU B . n B 1 98 GLY 98 96 96 GLY GLY B . n B 1 99 TRP 99 97 97 TRP TRP B . n B 1 100 ASN 100 98 98 ASN ASN B . n B 1 101 LYS 101 99 99 LYS LYS B . n B 1 102 LEU 102 100 100 LEU LEU B . n B 1 103 VAL 103 101 101 VAL VAL B . n B 1 104 SER 104 102 102 SER SER B . n B 1 105 TRP 105 103 103 TRP TRP B . n B 1 106 TYR 106 104 104 TYR TYR B . n B 1 107 THR 107 105 105 THR THR B . n B 1 108 LEU 108 106 106 LEU LEU B . n B 1 109 MET 109 107 107 MET MET B . n B 1 110 GLU 110 108 108 GLU GLU B . n B 1 111 GLY 111 109 109 GLY GLY B . n B 1 112 GLN 112 110 110 GLN GLN B . n B 1 113 GLU 113 111 111 GLU GLU B . n B 1 114 PRO 114 112 112 PRO PRO B . n B 1 115 ILE 115 113 113 ILE ILE B . n B 1 116 ALA 116 114 114 ALA ALA B . n B 1 117 ARG 117 115 115 ARG ARG B . n B 1 118 LYS 118 116 116 LYS LYS B . n B 1 119 VAL 119 117 117 VAL VAL B . n B 1 120 VAL 120 118 118 VAL VAL B . n B 1 121 GLU 121 119 119 GLU GLU B . n B 1 122 GLN 122 120 120 GLN GLN B . n B 1 123 GLY 123 121 121 GLY GLY B . n B 1 124 MET 124 122 122 MET MET B . n B 1 125 PHE 125 123 123 PHE PHE B . n B 1 126 VAL 126 124 124 VAL VAL B . n B 1 127 LYS 127 125 125 LYS LYS B . n B 1 128 HIS 128 126 126 HIS HIS B . n B 1 129 CYS 129 127 127 CYS CYS B . n B 1 130 LYS 130 128 128 LYS LYS B . n B 1 131 VAL 131 129 129 VAL VAL B . n B 1 132 GLU 132 130 130 GLU GLU B . n B 1 133 VAL 133 131 131 VAL VAL B . n B 1 134 TYR 134 132 132 TYR TYR B . n B 1 135 LEU 135 133 133 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT 1 134 2 FMT FMT A . D 3 ACY 1 134 1 ACY ACY B . E 4 HOH 1 135 3 HOH HOH A . E 4 HOH 2 136 136 HOH HOH A . E 4 HOH 3 137 4 HOH HOH A . E 4 HOH 4 138 5 HOH HOH A . E 4 HOH 5 139 139 HOH HOH A . E 4 HOH 6 140 7 HOH HOH A . E 4 HOH 7 141 141 HOH HOH A . E 4 HOH 8 142 142 HOH HOH A . E 4 HOH 9 143 143 HOH HOH A . E 4 HOH 10 144 8 HOH HOH A . E 4 HOH 11 145 145 HOH HOH A . E 4 HOH 12 146 146 HOH HOH A . E 4 HOH 13 147 147 HOH HOH A . E 4 HOH 14 148 148 HOH HOH A . E 4 HOH 15 149 13 HOH HOH A . E 4 HOH 16 150 150 HOH HOH A . E 4 HOH 17 151 14 HOH HOH A . E 4 HOH 18 152 152 HOH HOH A . E 4 HOH 19 153 17 HOH HOH A . E 4 HOH 20 154 20 HOH HOH A . E 4 HOH 21 155 23 HOH HOH A . E 4 HOH 22 156 156 HOH HOH A . E 4 HOH 23 157 157 HOH HOH A . E 4 HOH 24 158 27 HOH HOH A . E 4 HOH 25 159 29 HOH HOH A . E 4 HOH 26 160 160 HOH HOH A . E 4 HOH 27 161 34 HOH HOH A . E 4 HOH 28 162 162 HOH HOH A . E 4 HOH 29 163 163 HOH HOH A . E 4 HOH 30 164 164 HOH HOH A . E 4 HOH 31 165 35 HOH HOH A . E 4 HOH 32 166 166 HOH HOH A . E 4 HOH 33 167 167 HOH HOH A . E 4 HOH 34 168 168 HOH HOH A . E 4 HOH 35 169 169 HOH HOH A . E 4 HOH 36 170 170 HOH HOH A . E 4 HOH 37 171 171 HOH HOH A . E 4 HOH 38 172 172 HOH HOH A . E 4 HOH 39 173 173 HOH HOH A . E 4 HOH 40 174 174 HOH HOH A . E 4 HOH 41 175 175 HOH HOH A . E 4 HOH 42 176 176 HOH HOH A . E 4 HOH 43 177 177 HOH HOH A . E 4 HOH 44 178 178 HOH HOH A . E 4 HOH 45 179 36 HOH HOH A . E 4 HOH 46 180 39 HOH HOH A . E 4 HOH 47 181 41 HOH HOH A . E 4 HOH 48 182 43 HOH HOH A . E 4 HOH 49 183 44 HOH HOH A . E 4 HOH 50 184 45 HOH HOH A . E 4 HOH 51 185 185 HOH HOH A . E 4 HOH 52 186 186 HOH HOH A . E 4 HOH 53 187 187 HOH HOH A . E 4 HOH 54 188 188 HOH HOH A . E 4 HOH 55 189 189 HOH HOH A . E 4 HOH 56 190 190 HOH HOH A . E 4 HOH 57 191 191 HOH HOH A . E 4 HOH 58 192 192 HOH HOH A . E 4 HOH 59 193 193 HOH HOH A . E 4 HOH 60 194 46 HOH HOH A . E 4 HOH 61 195 195 HOH HOH A . E 4 HOH 62 197 197 HOH HOH A . E 4 HOH 63 198 198 HOH HOH A . E 4 HOH 64 199 199 HOH HOH A . E 4 HOH 65 200 200 HOH HOH A . E 4 HOH 66 201 47 HOH HOH A . E 4 HOH 67 202 48 HOH HOH A . E 4 HOH 68 203 203 HOH HOH A . E 4 HOH 69 204 49 HOH HOH A . E 4 HOH 70 205 51 HOH HOH A . E 4 HOH 71 206 206 HOH HOH A . E 4 HOH 72 207 54 HOH HOH A . E 4 HOH 73 208 57 HOH HOH A . E 4 HOH 74 209 58 HOH HOH A . E 4 HOH 75 210 59 HOH HOH A . E 4 HOH 76 211 62 HOH HOH A . E 4 HOH 77 212 63 HOH HOH A . E 4 HOH 78 213 64 HOH HOH A . E 4 HOH 79 214 65 HOH HOH A . E 4 HOH 80 215 67 HOH HOH A . E 4 HOH 81 216 69 HOH HOH A . E 4 HOH 82 217 71 HOH HOH A . E 4 HOH 83 218 72 HOH HOH A . E 4 HOH 84 219 73 HOH HOH A . E 4 HOH 85 220 77 HOH HOH A . E 4 HOH 86 221 80 HOH HOH A . E 4 HOH 87 222 82 HOH HOH A . E 4 HOH 88 223 83 HOH HOH A . E 4 HOH 89 224 84 HOH HOH A . E 4 HOH 90 225 88 HOH HOH A . E 4 HOH 91 226 90 HOH HOH A . E 4 HOH 92 227 91 HOH HOH A . E 4 HOH 93 228 93 HOH HOH A . E 4 HOH 94 229 96 HOH HOH A . E 4 HOH 95 230 97 HOH HOH A . E 4 HOH 96 231 99 HOH HOH A . E 4 HOH 97 232 101 HOH HOH A . E 4 HOH 98 233 103 HOH HOH A . E 4 HOH 99 234 104 HOH HOH A . E 4 HOH 100 235 105 HOH HOH A . E 4 HOH 101 236 109 HOH HOH A . E 4 HOH 102 237 110 HOH HOH A . E 4 HOH 103 238 112 HOH HOH A . E 4 HOH 104 239 113 HOH HOH A . E 4 HOH 105 240 114 HOH HOH A . E 4 HOH 106 241 115 HOH HOH A . E 4 HOH 107 242 118 HOH HOH A . E 4 HOH 108 243 119 HOH HOH A . E 4 HOH 109 244 124 HOH HOH A . E 4 HOH 110 245 129 HOH HOH A . E 4 HOH 111 246 134 HOH HOH A . F 4 HOH 1 135 135 HOH HOH B . F 4 HOH 2 136 6 HOH HOH B . F 4 HOH 3 137 137 HOH HOH B . F 4 HOH 4 138 138 HOH HOH B . F 4 HOH 5 139 9 HOH HOH B . F 4 HOH 6 140 140 HOH HOH B . F 4 HOH 7 141 10 HOH HOH B . F 4 HOH 8 142 11 HOH HOH B . F 4 HOH 9 143 12 HOH HOH B . F 4 HOH 10 144 144 HOH HOH B . F 4 HOH 11 145 15 HOH HOH B . F 4 HOH 12 146 16 HOH HOH B . F 4 HOH 13 147 18 HOH HOH B . F 4 HOH 14 148 19 HOH HOH B . F 4 HOH 15 149 149 HOH HOH B . F 4 HOH 16 150 21 HOH HOH B . F 4 HOH 17 151 151 HOH HOH B . F 4 HOH 18 152 22 HOH HOH B . F 4 HOH 19 153 153 HOH HOH B . F 4 HOH 20 154 154 HOH HOH B . F 4 HOH 21 155 155 HOH HOH B . F 4 HOH 22 156 24 HOH HOH B . F 4 HOH 23 157 25 HOH HOH B . F 4 HOH 24 158 158 HOH HOH B . F 4 HOH 25 159 159 HOH HOH B . F 4 HOH 26 160 26 HOH HOH B . F 4 HOH 27 161 161 HOH HOH B . F 4 HOH 28 162 28 HOH HOH B . F 4 HOH 29 163 30 HOH HOH B . F 4 HOH 30 164 31 HOH HOH B . F 4 HOH 31 165 165 HOH HOH B . F 4 HOH 32 166 32 HOH HOH B . F 4 HOH 33 167 33 HOH HOH B . F 4 HOH 34 168 37 HOH HOH B . F 4 HOH 35 169 38 HOH HOH B . F 4 HOH 36 170 40 HOH HOH B . F 4 HOH 37 171 42 HOH HOH B . F 4 HOH 38 172 50 HOH HOH B . F 4 HOH 39 173 52 HOH HOH B . F 4 HOH 40 174 53 HOH HOH B . F 4 HOH 41 175 55 HOH HOH B . F 4 HOH 42 176 56 HOH HOH B . F 4 HOH 43 177 60 HOH HOH B . F 4 HOH 44 178 61 HOH HOH B . F 4 HOH 45 179 179 HOH HOH B . F 4 HOH 46 180 180 HOH HOH B . F 4 HOH 47 181 181 HOH HOH B . F 4 HOH 48 182 182 HOH HOH B . F 4 HOH 49 183 183 HOH HOH B . F 4 HOH 50 184 184 HOH HOH B . F 4 HOH 51 185 66 HOH HOH B . F 4 HOH 52 186 68 HOH HOH B . F 4 HOH 53 187 70 HOH HOH B . F 4 HOH 54 188 74 HOH HOH B . F 4 HOH 55 189 75 HOH HOH B . F 4 HOH 56 190 76 HOH HOH B . F 4 HOH 57 191 78 HOH HOH B . F 4 HOH 58 192 79 HOH HOH B . F 4 HOH 59 193 81 HOH HOH B . F 4 HOH 60 194 194 HOH HOH B . F 4 HOH 61 195 85 HOH HOH B . F 4 HOH 62 196 196 HOH HOH B . F 4 HOH 63 197 87 HOH HOH B . F 4 HOH 64 198 89 HOH HOH B . F 4 HOH 65 199 92 HOH HOH B . F 4 HOH 66 200 94 HOH HOH B . F 4 HOH 67 201 201 HOH HOH B . F 4 HOH 68 202 202 HOH HOH B . F 4 HOH 69 203 95 HOH HOH B . F 4 HOH 70 204 204 HOH HOH B . F 4 HOH 71 205 205 HOH HOH B . F 4 HOH 72 206 98 HOH HOH B . F 4 HOH 73 207 100 HOH HOH B . F 4 HOH 74 208 102 HOH HOH B . F 4 HOH 75 209 106 HOH HOH B . F 4 HOH 76 210 107 HOH HOH B . F 4 HOH 77 211 108 HOH HOH B . F 4 HOH 78 212 111 HOH HOH B . F 4 HOH 79 213 116 HOH HOH B . F 4 HOH 80 214 117 HOH HOH B . F 4 HOH 81 215 120 HOH HOH B . F 4 HOH 82 216 121 HOH HOH B . F 4 HOH 83 217 122 HOH HOH B . F 4 HOH 84 218 123 HOH HOH B . F 4 HOH 85 219 125 HOH HOH B . F 4 HOH 86 220 126 HOH HOH B . F 4 HOH 87 221 127 HOH HOH B . F 4 HOH 88 222 128 HOH HOH B . F 4 HOH 89 223 130 HOH HOH B . F 4 HOH 90 224 131 HOH HOH B . F 4 HOH 91 225 132 HOH HOH B . F 4 HOH 92 226 133 HOH HOH B . F 4 HOH 93 227 86 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA octameric 8 2 author_and_software_defined_assembly PISA tetrameric 4 3 author_and_software_defined_assembly PISA dimeric 2 4 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,B,C,D,E,F 2 1,3 A,B,C,D,E,F 3 1 A,C,E 3 3 B,D,F 4 1,3 B,D,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 25000 ? 1 MORE -139 ? 1 'SSA (A^2)' 49840 ? 2 'ABSA (A^2)' 10460 ? 2 MORE -62 ? 2 'SSA (A^2)' 26960 ? 3 'ABSA (A^2)' 2950 ? 3 MORE -21 ? 3 'SSA (A^2)' 15760 ? 4 'ABSA (A^2)' 3060 ? 4 MORE -15 ? 4 'SSA (A^2)' 14870 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_545 y+1/2,x-1/2,-z+1/2 0.0000000000 1.0000000000 0.0000000000 69.0870000000 1.0000000000 0.0000000000 0.0000000000 -69.0870000000 0.0000000000 0.0000000000 -1.0000000000 66.0570000000 3 'crystal symmetry operation' 10_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 138.1740000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 69.0870000000 -1.0000000000 0.0000000000 0.0000000000 69.0870000000 0.0000000000 0.0000000000 -1.0000000000 66.0570000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 40.4022 4.3561 32.4890 0.1207 0.0847 0.1126 0.0244 0.0551 0.0036 5.7218 4.1915 9.4919 2.2490 -2.7291 -0.5267 -0.0984 -0.2162 -0.5342 -0.0479 -0.1389 -0.1486 0.7987 0.1693 0.2373 'X-RAY DIFFRACTION' 2 ? refined 45.7912 10.7447 14.6568 0.1767 0.1538 0.0920 0.0162 0.0474 -0.0314 8.4054 3.1734 6.4784 -0.7941 -1.7098 -0.9519 -0.0952 0.3040 -0.2261 -0.4191 0.0044 -0.2326 0.4399 0.0855 0.0908 'X-RAY DIFFRACTION' 3 ? refined 37.5989 16.0717 21.3187 0.1688 0.1865 0.1730 -0.0149 0.0078 -0.0063 2.8755 0.1466 6.6829 -0.6407 0.4572 -0.2208 0.0057 0.2111 -0.0108 -0.0109 -0.0451 0.0145 -0.0562 -0.1370 0.0394 'X-RAY DIFFRACTION' 4 ? refined 37.2830 16.6318 35.6646 0.1263 0.2040 0.1441 -0.0141 0.0205 -0.0513 6.9334 5.2419 6.1579 -2.6083 2.0030 -5.6277 -0.1036 -0.4073 0.4599 0.2129 -0.0861 -0.2097 -0.2187 0.1404 0.1897 'X-RAY DIFFRACTION' 5 ? refined 44.2220 10.1284 41.1391 0.1193 0.2918 0.1845 -0.0092 0.0667 0.0019 6.5817 2.9157 5.2237 -2.7865 5.6341 -2.0419 -0.0691 0.0146 0.3329 -0.0679 -0.1023 -0.3556 -0.1543 0.2674 0.1713 'X-RAY DIFFRACTION' 6 ? refined 40.1819 10.2585 46.5114 0.1246 0.2591 0.1549 0.0098 0.0429 0.0226 9.4619 1.6005 8.8354 3.6953 5.0450 0.9889 -0.2314 0.0414 0.1090 -0.1175 0.0915 0.0230 0.0734 -0.4395 0.1400 'X-RAY DIFFRACTION' 7 ? refined 30.6014 17.5945 35.3710 0.1301 0.2438 0.1806 0.0194 0.0369 -0.0530 1.8638 3.9754 8.6612 0.6013 -0.6569 -5.4327 -0.0707 -0.0296 0.0690 0.3106 -0.1248 -0.0493 -0.5555 -0.3650 0.1955 'X-RAY DIFFRACTION' 8 ? refined 25.1510 29.5225 22.3557 0.3803 0.5312 0.7823 0.1999 -0.0881 0.0413 18.6088 23.8769 7.3956 6.2830 1.3691 -0.0944 -0.4266 0.0788 1.8313 -0.3503 0.1287 2.7571 -1.1437 -1.2822 0.2979 'X-RAY DIFFRACTION' 9 ? refined 36.3871 30.8904 22.9978 0.3170 0.2360 0.2509 0.0546 -0.0597 0.0452 20.1303 10.5612 3.8097 4.0141 -0.3601 0.3225 -0.3885 0.6106 0.9712 -0.2076 -0.1947 0.1228 -0.8031 -0.4274 0.5832 'X-RAY DIFFRACTION' 10 ? refined 43.0836 24.3264 27.3830 0.1040 0.1087 0.1422 -0.0063 -0.0068 0.0168 11.5843 16.3071 13.1037 3.3632 0.7789 2.5721 -0.0572 0.3100 0.0088 -0.1543 -0.1266 -0.4264 -0.1129 0.6318 0.1839 'X-RAY DIFFRACTION' 11 ? refined 33.2812 10.3549 26.7664 0.0925 0.1176 0.0881 -0.0184 0.0131 -0.0280 3.5550 2.5430 5.6726 1.6214 -0.5147 -1.0375 -0.1075 0.1016 -0.2845 -0.1016 -0.0906 0.0780 0.2802 -0.2311 0.1981 'X-RAY DIFFRACTION' 12 ? refined 29.0144 18.9698 21.1648 0.0876 0.2515 0.1359 0.0049 -0.0501 -0.0108 14.8526 2.6281 12.3853 -0.3168 -8.5993 -2.1484 0.0903 0.8695 -0.0974 -0.2400 -0.0005 0.4527 -0.1109 -1.2535 -0.0898 'X-RAY DIFFRACTION' 13 ? refined 48.4108 21.0942 10.4596 0.2440 0.2123 0.1795 0.0365 0.0320 0.0590 18.3551 5.5294 1.4078 7.8599 -2.2523 -1.6594 0.2127 0.2979 0.9186 -0.2801 -0.1668 0.2389 -0.1846 -0.0007 -0.0458 'X-RAY DIFFRACTION' 14 ? refined 68.8496 21.1301 9.7098 0.3989 0.2716 0.3994 0.0318 0.0005 0.0961 5.1627 3.7899 0.2893 -4.4210 -1.2079 1.0326 0.2646 0.1924 0.5923 -0.1923 -0.1620 -0.4874 -0.0966 -0.0235 -0.1026 'X-RAY DIFFRACTION' 15 ? refined 53.2111 7.1644 20.0902 0.2123 0.0953 0.0933 0.0556 0.0644 0.0170 11.1614 3.8378 12.9393 -3.1459 1.8713 -0.7711 -0.0697 -0.2866 0.1390 0.1774 0.0319 0.1959 -0.0877 -0.0332 0.0378 'X-RAY DIFFRACTION' 16 ? refined 61.0855 -3.0977 20.1128 0.1868 0.0997 0.1085 0.0196 0.0595 0.0299 3.5732 10.4939 1.6740 -4.0411 0.4308 1.5237 -0.0971 -0.1874 -0.3073 0.5383 0.1706 0.1066 0.0039 0.0036 -0.0735 'X-RAY DIFFRACTION' 17 ? refined 59.6627 -13.5257 12.9612 0.0656 0.0606 0.2933 0.0216 0.0184 -0.0930 5.3574 11.3322 8.3384 -0.4242 1.1771 -4.1595 -0.0254 0.0444 -0.8102 0.1603 -0.0431 0.1151 0.1680 0.1110 0.0685 'X-RAY DIFFRACTION' 18 ? refined 60.6495 0.7890 5.9222 0.2639 0.2667 0.1885 -0.0372 0.0168 0.0026 3.1806 13.0792 7.7989 -4.4524 -0.8072 7.5333 0.1118 0.4127 0.3212 -0.4950 0.0380 -0.3375 -0.5691 0.3868 -0.1498 'X-RAY DIFFRACTION' 19 ? refined 62.1844 6.4841 12.1197 0.2074 0.1306 0.1075 0.0241 0.0444 0.0142 7.1569 3.5435 3.7573 3.5264 3.5343 0.8301 -0.0682 0.4237 -0.0084 -0.0820 0.1580 -0.2247 0.0977 0.1281 -0.0898 'X-RAY DIFFRACTION' 20 ? refined 62.6278 13.3174 12.0162 0.2142 0.1081 0.0503 0.0206 0.0299 0.0261 12.0180 5.3983 2.4287 -4.6676 4.1701 -2.2738 0.0514 0.4195 0.1258 -0.0141 -0.0699 -0.2868 -0.0081 0.0732 0.0185 'X-RAY DIFFRACTION' 21 ? refined 55.2192 2.2084 3.6337 0.3349 0.3693 0.1911 0.0073 -0.0075 -0.0225 2.0131 9.3005 1.2972 -1.4921 1.0216 1.6854 0.1452 0.3370 -0.2085 -0.7217 0.0087 0.0399 -0.1148 0.1238 -0.1539 'X-RAY DIFFRACTION' 22 ? refined 53.9117 -12.0055 -6.5351 1.3135 0.9916 0.7140 0.1179 -0.4392 -0.3991 25.8329 3.6825 20.9530 3.7143 -10.4640 5.3827 -1.0510 3.2833 -0.7476 -0.4935 0.3460 0.3902 1.0535 -1.3740 0.7050 'X-RAY DIFFRACTION' 23 ? refined 66.5764 -11.0329 0.2253 0.3088 0.2591 0.1454 0.1094 0.0544 -0.1380 17.8325 15.5273 18.1308 5.4800 5.8686 6.9109 0.4946 1.2193 -0.6511 -0.6223 -0.0501 -0.4558 0.6912 0.8113 -0.4445 'X-RAY DIFFRACTION' 24 ? refined 58.5226 -8.1847 11.8502 0.0909 0.0400 0.1880 -0.0226 0.0111 -0.0680 6.9345 4.5013 4.0237 -1.6090 -1.6165 0.2133 0.0966 0.0457 -0.6106 0.0185 0.0652 0.3210 0.0222 0.1444 -0.1618 'X-RAY DIFFRACTION' 25 ? refined 49.6456 -1.9133 8.7239 0.1165 0.1593 0.2104 -0.0312 0.0034 -0.0256 4.8146 9.9777 9.0852 -1.2985 2.0367 5.3519 0.0160 0.3397 -0.2616 -0.4978 -0.0246 0.6573 -0.3199 -0.4340 0.0086 'X-RAY DIFFRACTION' 26 ? refined 56.7614 -16.3451 7.8672 0.2839 0.2357 0.6193 -0.0287 0.0181 -0.1456 8.4684 12.3307 11.0491 -8.5983 9.6525 -9.9524 0.3310 -0.0961 -0.5756 -0.3139 0.1909 0.8822 0.4130 -0.1691 -0.5219 'X-RAY DIFFRACTION' 27 ? refined 73.7382 -23.8562 9.8537 0.2892 0.1189 0.2016 0.0643 -0.0395 -0.0868 58.9343 7.2244 16.9875 -3.6007 -24.7168 1.5231 -0.3018 0.0709 -0.8543 0.2683 0.0559 0.6838 -0.2445 -0.5407 0.2459 'X-RAY DIFFRACTION' 28 ? refined 92.8523 -22.2824 13.3605 0.2820 0.2028 0.1867 0.0339 -0.0274 -0.0644 7.6008 1.0390 2.8835 -2.1498 4.0601 -1.7026 0.3669 0.5606 -0.4667 -0.2203 -0.2147 0.0673 0.3511 0.3604 -0.1522 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 2 ? ? A 20 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 21 ? ? A 26 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 27 ? ? A 35 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 36 ? ? A 41 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 42 ? ? A 51 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 52 ? ? A 57 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 58 ? ? A 71 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 72 ? ? A 78 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 79 ? ? A 83 ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 84 ? ? A 89 ? ? ? ? 'X-RAY DIFFRACTION' 11 11 A 90 ? ? A 107 ? ? ? ? 'X-RAY DIFFRACTION' 12 12 A 108 ? ? A 116 ? ? ? ? 'X-RAY DIFFRACTION' 13 13 A 117 ? ? A 122 ? ? ? ? 'X-RAY DIFFRACTION' 14 14 A 123 ? ? A 133 ? ? ? ? 'X-RAY DIFFRACTION' 15 15 B 5 ? ? B 10 ? ? ? ? 'X-RAY DIFFRACTION' 16 16 B 11 ? ? B 24 ? ? ? ? 'X-RAY DIFFRACTION' 17 17 B 25 ? ? B 34 ? ? ? ? 'X-RAY DIFFRACTION' 18 18 B 35 ? ? B 38 ? ? ? ? 'X-RAY DIFFRACTION' 19 19 B 39 ? ? B 49 ? ? ? ? 'X-RAY DIFFRACTION' 20 20 B 50 ? ? B 58 ? ? ? ? 'X-RAY DIFFRACTION' 21 21 B 59 ? ? B 70 ? ? ? ? 'X-RAY DIFFRACTION' 22 22 B 71 ? ? B 78 ? ? ? ? 'X-RAY DIFFRACTION' 23 23 B 79 ? ? B 87 ? ? ? ? 'X-RAY DIFFRACTION' 24 24 B 88 ? ? B 98 ? ? ? ? 'X-RAY DIFFRACTION' 25 25 B 99 ? ? B 110 ? ? ? ? 'X-RAY DIFFRACTION' 26 26 B 111 ? ? B 118 ? ? ? ? 'X-RAY DIFFRACTION' 27 27 B 119 ? ? B 123 ? ? ? ? 'X-RAY DIFFRACTION' 28 28 B 124 ? ? B 133 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0102 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD2 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 48 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE2 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 86 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 10_655 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 75 ? ? -52.30 -71.40 2 1 GLU A 86 ? ? 73.99 -47.11 3 1 THR A 105 ? ? 68.47 161.71 4 1 ASP B 51 ? ? -145.27 59.08 5 1 ASP B 85 ? ? -39.76 137.83 6 1 GLU B 86 ? ? 69.60 -47.27 7 1 THR B 105 ? ? 70.86 161.33 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 3 ? CG ? A GLU 5 CG 2 1 Y 1 A GLU 3 ? CD ? A GLU 5 CD 3 1 Y 1 A GLU 3 ? OE1 ? A GLU 5 OE1 4 1 Y 1 A GLU 3 ? OE2 ? A GLU 5 OE2 5 1 Y 1 A ASP 75 ? CG ? A ASP 77 CG 6 1 Y 1 A ASP 75 ? OD1 ? A ASP 77 OD1 7 1 Y 1 A ASP 75 ? OD2 ? A ASP 77 OD2 8 1 Y 1 B GLU 111 ? CD ? B GLU 113 CD 9 1 Y 1 B GLU 111 ? OE1 ? B GLU 113 OE1 10 1 Y 1 B GLU 111 ? OE2 ? B GLU 113 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A MET 1 ? A MET 3 4 1 Y 1 B GLY -1 ? B GLY 1 5 1 Y 1 B SER 0 ? B SER 2 6 1 Y 1 B MET 1 ? B MET 3 7 1 Y 1 B ALA 2 ? B ALA 4 8 1 Y 1 B GLU 3 ? B GLU 5 9 1 Y 1 B GLY 4 ? B GLY 6 10 1 Y 1 B ASP 75 ? B ASP 77 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACY C C N N 1 ACY O O N N 2 ACY OXT O N N 3 ACY CH3 C N N 4 ACY HXT H N N 5 ACY H1 H N N 6 ACY H2 H N N 7 ACY H3 H N N 8 ALA N N N N 9 ALA CA C N S 10 ALA C C N N 11 ALA O O N N 12 ALA CB C N N 13 ALA OXT O N N 14 ALA H H N N 15 ALA H2 H N N 16 ALA HA H N N 17 ALA HB1 H N N 18 ALA HB2 H N N 19 ALA HB3 H N N 20 ALA HXT H N N 21 ARG N N N N 22 ARG CA C N S 23 ARG C C N N 24 ARG O O N N 25 ARG CB C N N 26 ARG CG C N N 27 ARG CD C N N 28 ARG NE N N N 29 ARG CZ C N N 30 ARG NH1 N N N 31 ARG NH2 N N N 32 ARG OXT O N N 33 ARG H H N N 34 ARG H2 H N N 35 ARG HA H N N 36 ARG HB2 H N N 37 ARG HB3 H N N 38 ARG HG2 H N N 39 ARG HG3 H N N 40 ARG HD2 H N N 41 ARG HD3 H N N 42 ARG HE H N N 43 ARG HH11 H N N 44 ARG HH12 H N N 45 ARG HH21 H N N 46 ARG HH22 H N N 47 ARG HXT H N N 48 ASN N N N N 49 ASN CA C N S 50 ASN C C N N 51 ASN O O N N 52 ASN CB C N N 53 ASN CG C N N 54 ASN OD1 O N N 55 ASN ND2 N N N 56 ASN OXT O N N 57 ASN H H N N 58 ASN H2 H N N 59 ASN HA H N N 60 ASN HB2 H N N 61 ASN HB3 H N N 62 ASN HD21 H N N 63 ASN HD22 H N N 64 ASN HXT H N N 65 ASP N N N N 66 ASP CA C N S 67 ASP C C N N 68 ASP O O N N 69 ASP CB C N N 70 ASP CG C N N 71 ASP OD1 O N N 72 ASP OD2 O N N 73 ASP OXT O N N 74 ASP H H N N 75 ASP H2 H N N 76 ASP HA H N N 77 ASP HB2 H N N 78 ASP HB3 H N N 79 ASP HD2 H N N 80 ASP HXT H N N 81 CYS N N N N 82 CYS CA C N R 83 CYS C C N N 84 CYS O O N N 85 CYS CB C N N 86 CYS SG S N N 87 CYS OXT O N N 88 CYS H H N N 89 CYS H2 H N N 90 CYS HA H N N 91 CYS HB2 H N N 92 CYS HB3 H N N 93 CYS HG H N N 94 CYS HXT H N N 95 FMT C C N N 96 FMT O1 O N N 97 FMT O2 O N N 98 FMT H H N N 99 FMT HO2 H N N 100 GLN N N N N 101 GLN CA C N S 102 GLN C C N N 103 GLN O O N N 104 GLN CB C N N 105 GLN CG C N N 106 GLN CD C N N 107 GLN OE1 O N N 108 GLN NE2 N N N 109 GLN OXT O N N 110 GLN H H N N 111 GLN H2 H N N 112 GLN HA H N N 113 GLN HB2 H N N 114 GLN HB3 H N N 115 GLN HG2 H N N 116 GLN HG3 H N N 117 GLN HE21 H N N 118 GLN HE22 H N N 119 GLN HXT H N N 120 GLU N N N N 121 GLU CA C N S 122 GLU C C N N 123 GLU O O N N 124 GLU CB C N N 125 GLU CG C N N 126 GLU CD C N N 127 GLU OE1 O N N 128 GLU OE2 O N N 129 GLU OXT O N N 130 GLU H H N N 131 GLU H2 H N N 132 GLU HA H N N 133 GLU HB2 H N N 134 GLU HB3 H N N 135 GLU HG2 H N N 136 GLU HG3 H N N 137 GLU HE2 H N N 138 GLU HXT H N N 139 GLY N N N N 140 GLY CA C N N 141 GLY C C N N 142 GLY O O N N 143 GLY OXT O N N 144 GLY H H N N 145 GLY H2 H N N 146 GLY HA2 H N N 147 GLY HA3 H N N 148 GLY HXT H N N 149 HIS N N N N 150 HIS CA C N S 151 HIS C C N N 152 HIS O O N N 153 HIS CB C N N 154 HIS CG C Y N 155 HIS ND1 N Y N 156 HIS CD2 C Y N 157 HIS CE1 C Y N 158 HIS NE2 N Y N 159 HIS OXT O N N 160 HIS H H N N 161 HIS H2 H N N 162 HIS HA H N N 163 HIS HB2 H N N 164 HIS HB3 H N N 165 HIS HD1 H N N 166 HIS HD2 H N N 167 HIS HE1 H N N 168 HIS HE2 H N N 169 HIS HXT H N N 170 HOH O O N N 171 HOH H1 H N N 172 HOH H2 H N N 173 ILE N N N N 174 ILE CA C N S 175 ILE C C N N 176 ILE O O N N 177 ILE CB C N S 178 ILE CG1 C N N 179 ILE CG2 C N N 180 ILE CD1 C N N 181 ILE OXT O N N 182 ILE H H N N 183 ILE H2 H N N 184 ILE HA H N N 185 ILE HB H N N 186 ILE HG12 H N N 187 ILE HG13 H N N 188 ILE HG21 H N N 189 ILE HG22 H N N 190 ILE HG23 H N N 191 ILE HD11 H N N 192 ILE HD12 H N N 193 ILE HD13 H N N 194 ILE HXT H N N 195 LEU N N N N 196 LEU CA C N S 197 LEU C C N N 198 LEU O O N N 199 LEU CB C N N 200 LEU CG C N N 201 LEU CD1 C N N 202 LEU CD2 C N N 203 LEU OXT O N N 204 LEU H H N N 205 LEU H2 H N N 206 LEU HA H N N 207 LEU HB2 H N N 208 LEU HB3 H N N 209 LEU HG H N N 210 LEU HD11 H N N 211 LEU HD12 H N N 212 LEU HD13 H N N 213 LEU HD21 H N N 214 LEU HD22 H N N 215 LEU HD23 H N N 216 LEU HXT H N N 217 LYS N N N N 218 LYS CA C N S 219 LYS C C N N 220 LYS O O N N 221 LYS CB C N N 222 LYS CG C N N 223 LYS CD C N N 224 LYS CE C N N 225 LYS NZ N N N 226 LYS OXT O N N 227 LYS H H N N 228 LYS H2 H N N 229 LYS HA H N N 230 LYS HB2 H N N 231 LYS HB3 H N N 232 LYS HG2 H N N 233 LYS HG3 H N N 234 LYS HD2 H N N 235 LYS HD3 H N N 236 LYS HE2 H N N 237 LYS HE3 H N N 238 LYS HZ1 H N N 239 LYS HZ2 H N N 240 LYS HZ3 H N N 241 LYS HXT H N N 242 MET N N N N 243 MET CA C N S 244 MET C C N N 245 MET O O N N 246 MET CB C N N 247 MET CG C N N 248 MET SD S N N 249 MET CE C N N 250 MET OXT O N N 251 MET H H N N 252 MET H2 H N N 253 MET HA H N N 254 MET HB2 H N N 255 MET HB3 H N N 256 MET HG2 H N N 257 MET HG3 H N N 258 MET HE1 H N N 259 MET HE2 H N N 260 MET HE3 H N N 261 MET HXT H N N 262 PHE N N N N 263 PHE CA C N S 264 PHE C C N N 265 PHE O O N N 266 PHE CB C N N 267 PHE CG C Y N 268 PHE CD1 C Y N 269 PHE CD2 C Y N 270 PHE CE1 C Y N 271 PHE CE2 C Y N 272 PHE CZ C Y N 273 PHE OXT O N N 274 PHE H H N N 275 PHE H2 H N N 276 PHE HA H N N 277 PHE HB2 H N N 278 PHE HB3 H N N 279 PHE HD1 H N N 280 PHE HD2 H N N 281 PHE HE1 H N N 282 PHE HE2 H N N 283 PHE HZ H N N 284 PHE HXT H N N 285 PRO N N N N 286 PRO CA C N S 287 PRO C C N N 288 PRO O O N N 289 PRO CB C N N 290 PRO CG C N N 291 PRO CD C N N 292 PRO OXT O N N 293 PRO H H N N 294 PRO HA H N N 295 PRO HB2 H N N 296 PRO HB3 H N N 297 PRO HG2 H N N 298 PRO HG3 H N N 299 PRO HD2 H N N 300 PRO HD3 H N N 301 PRO HXT H N N 302 SER N N N N 303 SER CA C N S 304 SER C C N N 305 SER O O N N 306 SER CB C N N 307 SER OG O N N 308 SER OXT O N N 309 SER H H N N 310 SER H2 H N N 311 SER HA H N N 312 SER HB2 H N N 313 SER HB3 H N N 314 SER HG H N N 315 SER HXT H N N 316 THR N N N N 317 THR CA C N S 318 THR C C N N 319 THR O O N N 320 THR CB C N R 321 THR OG1 O N N 322 THR CG2 C N N 323 THR OXT O N N 324 THR H H N N 325 THR H2 H N N 326 THR HA H N N 327 THR HB H N N 328 THR HG1 H N N 329 THR HG21 H N N 330 THR HG22 H N N 331 THR HG23 H N N 332 THR HXT H N N 333 TRP N N N N 334 TRP CA C N S 335 TRP C C N N 336 TRP O O N N 337 TRP CB C N N 338 TRP CG C Y N 339 TRP CD1 C Y N 340 TRP CD2 C Y N 341 TRP NE1 N Y N 342 TRP CE2 C Y N 343 TRP CE3 C Y N 344 TRP CZ2 C Y N 345 TRP CZ3 C Y N 346 TRP CH2 C Y N 347 TRP OXT O N N 348 TRP H H N N 349 TRP H2 H N N 350 TRP HA H N N 351 TRP HB2 H N N 352 TRP HB3 H N N 353 TRP HD1 H N N 354 TRP HE1 H N N 355 TRP HE3 H N N 356 TRP HZ2 H N N 357 TRP HZ3 H N N 358 TRP HH2 H N N 359 TRP HXT H N N 360 TYR N N N N 361 TYR CA C N S 362 TYR C C N N 363 TYR O O N N 364 TYR CB C N N 365 TYR CG C Y N 366 TYR CD1 C Y N 367 TYR CD2 C Y N 368 TYR CE1 C Y N 369 TYR CE2 C Y N 370 TYR CZ C Y N 371 TYR OH O N N 372 TYR OXT O N N 373 TYR H H N N 374 TYR H2 H N N 375 TYR HA H N N 376 TYR HB2 H N N 377 TYR HB3 H N N 378 TYR HD1 H N N 379 TYR HD2 H N N 380 TYR HE1 H N N 381 TYR HE2 H N N 382 TYR HH H N N 383 TYR HXT H N N 384 VAL N N N N 385 VAL CA C N S 386 VAL C C N N 387 VAL O O N N 388 VAL CB C N N 389 VAL CG1 C N N 390 VAL CG2 C N N 391 VAL OXT O N N 392 VAL H H N N 393 VAL H2 H N N 394 VAL HA H N N 395 VAL HB H N N 396 VAL HG11 H N N 397 VAL HG12 H N N 398 VAL HG13 H N N 399 VAL HG21 H N N 400 VAL HG22 H N N 401 VAL HG23 H N N 402 VAL HXT H N N 403 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACY C O doub N N 1 ACY C OXT sing N N 2 ACY C CH3 sing N N 3 ACY OXT HXT sing N N 4 ACY CH3 H1 sing N N 5 ACY CH3 H2 sing N N 6 ACY CH3 H3 sing N N 7 ALA N CA sing N N 8 ALA N H sing N N 9 ALA N H2 sing N N 10 ALA CA C sing N N 11 ALA CA CB sing N N 12 ALA CA HA sing N N 13 ALA C O doub N N 14 ALA C OXT sing N N 15 ALA CB HB1 sing N N 16 ALA CB HB2 sing N N 17 ALA CB HB3 sing N N 18 ALA OXT HXT sing N N 19 ARG N CA sing N N 20 ARG N H sing N N 21 ARG N H2 sing N N 22 ARG CA C sing N N 23 ARG CA CB sing N N 24 ARG CA HA sing N N 25 ARG C O doub N N 26 ARG C OXT sing N N 27 ARG CB CG sing N N 28 ARG CB HB2 sing N N 29 ARG CB HB3 sing N N 30 ARG CG CD sing N N 31 ARG CG HG2 sing N N 32 ARG CG HG3 sing N N 33 ARG CD NE sing N N 34 ARG CD HD2 sing N N 35 ARG CD HD3 sing N N 36 ARG NE CZ sing N N 37 ARG NE HE sing N N 38 ARG CZ NH1 sing N N 39 ARG CZ NH2 doub N N 40 ARG NH1 HH11 sing N N 41 ARG NH1 HH12 sing N N 42 ARG NH2 HH21 sing N N 43 ARG NH2 HH22 sing N N 44 ARG OXT HXT sing N N 45 ASN N CA sing N N 46 ASN N H sing N N 47 ASN N H2 sing N N 48 ASN CA C sing N N 49 ASN CA CB sing N N 50 ASN CA HA sing N N 51 ASN C O doub N N 52 ASN C OXT sing N N 53 ASN CB CG sing N N 54 ASN CB HB2 sing N N 55 ASN CB HB3 sing N N 56 ASN CG OD1 doub N N 57 ASN CG ND2 sing N N 58 ASN ND2 HD21 sing N N 59 ASN ND2 HD22 sing N N 60 ASN OXT HXT sing N N 61 ASP N CA sing N N 62 ASP N H sing N N 63 ASP N H2 sing N N 64 ASP CA C sing N N 65 ASP CA CB sing N N 66 ASP CA HA sing N N 67 ASP C O doub N N 68 ASP C OXT sing N N 69 ASP CB CG sing N N 70 ASP CB HB2 sing N N 71 ASP CB HB3 sing N N 72 ASP CG OD1 doub N N 73 ASP CG OD2 sing N N 74 ASP OD2 HD2 sing N N 75 ASP OXT HXT sing N N 76 CYS N CA sing N N 77 CYS N H sing N N 78 CYS N H2 sing N N 79 CYS CA C sing N N 80 CYS CA CB sing N N 81 CYS CA HA sing N N 82 CYS C O doub N N 83 CYS C OXT sing N N 84 CYS CB SG sing N N 85 CYS CB HB2 sing N N 86 CYS CB HB3 sing N N 87 CYS SG HG sing N N 88 CYS OXT HXT sing N N 89 FMT C O1 doub N N 90 FMT C O2 sing N N 91 FMT C H sing N N 92 FMT O2 HO2 sing N N 93 GLN N CA sing N N 94 GLN N H sing N N 95 GLN N H2 sing N N 96 GLN CA C sing N N 97 GLN CA CB sing N N 98 GLN CA HA sing N N 99 GLN C O doub N N 100 GLN C OXT sing N N 101 GLN CB CG sing N N 102 GLN CB HB2 sing N N 103 GLN CB HB3 sing N N 104 GLN CG CD sing N N 105 GLN CG HG2 sing N N 106 GLN CG HG3 sing N N 107 GLN CD OE1 doub N N 108 GLN CD NE2 sing N N 109 GLN NE2 HE21 sing N N 110 GLN NE2 HE22 sing N N 111 GLN OXT HXT sing N N 112 GLU N CA sing N N 113 GLU N H sing N N 114 GLU N H2 sing N N 115 GLU CA C sing N N 116 GLU CA CB sing N N 117 GLU CA HA sing N N 118 GLU C O doub N N 119 GLU C OXT sing N N 120 GLU CB CG sing N N 121 GLU CB HB2 sing N N 122 GLU CB HB3 sing N N 123 GLU CG CD sing N N 124 GLU CG HG2 sing N N 125 GLU CG HG3 sing N N 126 GLU CD OE1 doub N N 127 GLU CD OE2 sing N N 128 GLU OE2 HE2 sing N N 129 GLU OXT HXT sing N N 130 GLY N CA sing N N 131 GLY N H sing N N 132 GLY N H2 sing N N 133 GLY CA C sing N N 134 GLY CA HA2 sing N N 135 GLY CA HA3 sing N N 136 GLY C O doub N N 137 GLY C OXT sing N N 138 GLY OXT HXT sing N N 139 HIS N CA sing N N 140 HIS N H sing N N 141 HIS N H2 sing N N 142 HIS CA C sing N N 143 HIS CA CB sing N N 144 HIS CA HA sing N N 145 HIS C O doub N N 146 HIS C OXT sing N N 147 HIS CB CG sing N N 148 HIS CB HB2 sing N N 149 HIS CB HB3 sing N N 150 HIS CG ND1 sing Y N 151 HIS CG CD2 doub Y N 152 HIS ND1 CE1 doub Y N 153 HIS ND1 HD1 sing N N 154 HIS CD2 NE2 sing Y N 155 HIS CD2 HD2 sing N N 156 HIS CE1 NE2 sing Y N 157 HIS CE1 HE1 sing N N 158 HIS NE2 HE2 sing N N 159 HIS OXT HXT sing N N 160 HOH O H1 sing N N 161 HOH O H2 sing N N 162 ILE N CA sing N N 163 ILE N H sing N N 164 ILE N H2 sing N N 165 ILE CA C sing N N 166 ILE CA CB sing N N 167 ILE CA HA sing N N 168 ILE C O doub N N 169 ILE C OXT sing N N 170 ILE CB CG1 sing N N 171 ILE CB CG2 sing N N 172 ILE CB HB sing N N 173 ILE CG1 CD1 sing N N 174 ILE CG1 HG12 sing N N 175 ILE CG1 HG13 sing N N 176 ILE CG2 HG21 sing N N 177 ILE CG2 HG22 sing N N 178 ILE CG2 HG23 sing N N 179 ILE CD1 HD11 sing N N 180 ILE CD1 HD12 sing N N 181 ILE CD1 HD13 sing N N 182 ILE OXT HXT sing N N 183 LEU N CA sing N N 184 LEU N H sing N N 185 LEU N H2 sing N N 186 LEU CA C sing N N 187 LEU CA CB sing N N 188 LEU CA HA sing N N 189 LEU C O doub N N 190 LEU C OXT sing N N 191 LEU CB CG sing N N 192 LEU CB HB2 sing N N 193 LEU CB HB3 sing N N 194 LEU CG CD1 sing N N 195 LEU CG CD2 sing N N 196 LEU CG HG sing N N 197 LEU CD1 HD11 sing N N 198 LEU CD1 HD12 sing N N 199 LEU CD1 HD13 sing N N 200 LEU CD2 HD21 sing N N 201 LEU CD2 HD22 sing N N 202 LEU CD2 HD23 sing N N 203 LEU OXT HXT sing N N 204 LYS N CA sing N N 205 LYS N H sing N N 206 LYS N H2 sing N N 207 LYS CA C sing N N 208 LYS CA CB sing N N 209 LYS CA HA sing N N 210 LYS C O doub N N 211 LYS C OXT sing N N 212 LYS CB CG sing N N 213 LYS CB HB2 sing N N 214 LYS CB HB3 sing N N 215 LYS CG CD sing N N 216 LYS CG HG2 sing N N 217 LYS CG HG3 sing N N 218 LYS CD CE sing N N 219 LYS CD HD2 sing N N 220 LYS CD HD3 sing N N 221 LYS CE NZ sing N N 222 LYS CE HE2 sing N N 223 LYS CE HE3 sing N N 224 LYS NZ HZ1 sing N N 225 LYS NZ HZ2 sing N N 226 LYS NZ HZ3 sing N N 227 LYS OXT HXT sing N N 228 MET N CA sing N N 229 MET N H sing N N 230 MET N H2 sing N N 231 MET CA C sing N N 232 MET CA CB sing N N 233 MET CA HA sing N N 234 MET C O doub N N 235 MET C OXT sing N N 236 MET CB CG sing N N 237 MET CB HB2 sing N N 238 MET CB HB3 sing N N 239 MET CG SD sing N N 240 MET CG HG2 sing N N 241 MET CG HG3 sing N N 242 MET SD CE sing N N 243 MET CE HE1 sing N N 244 MET CE HE2 sing N N 245 MET CE HE3 sing N N 246 MET OXT HXT sing N N 247 PHE N CA sing N N 248 PHE N H sing N N 249 PHE N H2 sing N N 250 PHE CA C sing N N 251 PHE CA CB sing N N 252 PHE CA HA sing N N 253 PHE C O doub N N 254 PHE C OXT sing N N 255 PHE CB CG sing N N 256 PHE CB HB2 sing N N 257 PHE CB HB3 sing N N 258 PHE CG CD1 doub Y N 259 PHE CG CD2 sing Y N 260 PHE CD1 CE1 sing Y N 261 PHE CD1 HD1 sing N N 262 PHE CD2 CE2 doub Y N 263 PHE CD2 HD2 sing N N 264 PHE CE1 CZ doub Y N 265 PHE CE1 HE1 sing N N 266 PHE CE2 CZ sing Y N 267 PHE CE2 HE2 sing N N 268 PHE CZ HZ sing N N 269 PHE OXT HXT sing N N 270 PRO N CA sing N N 271 PRO N CD sing N N 272 PRO N H sing N N 273 PRO CA C sing N N 274 PRO CA CB sing N N 275 PRO CA HA sing N N 276 PRO C O doub N N 277 PRO C OXT sing N N 278 PRO CB CG sing N N 279 PRO CB HB2 sing N N 280 PRO CB HB3 sing N N 281 PRO CG CD sing N N 282 PRO CG HG2 sing N N 283 PRO CG HG3 sing N N 284 PRO CD HD2 sing N N 285 PRO CD HD3 sing N N 286 PRO OXT HXT sing N N 287 SER N CA sing N N 288 SER N H sing N N 289 SER N H2 sing N N 290 SER CA C sing N N 291 SER CA CB sing N N 292 SER CA HA sing N N 293 SER C O doub N N 294 SER C OXT sing N N 295 SER CB OG sing N N 296 SER CB HB2 sing N N 297 SER CB HB3 sing N N 298 SER OG HG sing N N 299 SER OXT HXT sing N N 300 THR N CA sing N N 301 THR N H sing N N 302 THR N H2 sing N N 303 THR CA C sing N N 304 THR CA CB sing N N 305 THR CA HA sing N N 306 THR C O doub N N 307 THR C OXT sing N N 308 THR CB OG1 sing N N 309 THR CB CG2 sing N N 310 THR CB HB sing N N 311 THR OG1 HG1 sing N N 312 THR CG2 HG21 sing N N 313 THR CG2 HG22 sing N N 314 THR CG2 HG23 sing N N 315 THR OXT HXT sing N N 316 TRP N CA sing N N 317 TRP N H sing N N 318 TRP N H2 sing N N 319 TRP CA C sing N N 320 TRP CA CB sing N N 321 TRP CA HA sing N N 322 TRP C O doub N N 323 TRP C OXT sing N N 324 TRP CB CG sing N N 325 TRP CB HB2 sing N N 326 TRP CB HB3 sing N N 327 TRP CG CD1 doub Y N 328 TRP CG CD2 sing Y N 329 TRP CD1 NE1 sing Y N 330 TRP CD1 HD1 sing N N 331 TRP CD2 CE2 doub Y N 332 TRP CD2 CE3 sing Y N 333 TRP NE1 CE2 sing Y N 334 TRP NE1 HE1 sing N N 335 TRP CE2 CZ2 sing Y N 336 TRP CE3 CZ3 doub Y N 337 TRP CE3 HE3 sing N N 338 TRP CZ2 CH2 doub Y N 339 TRP CZ2 HZ2 sing N N 340 TRP CZ3 CH2 sing Y N 341 TRP CZ3 HZ3 sing N N 342 TRP CH2 HH2 sing N N 343 TRP OXT HXT sing N N 344 TYR N CA sing N N 345 TYR N H sing N N 346 TYR N H2 sing N N 347 TYR CA C sing N N 348 TYR CA CB sing N N 349 TYR CA HA sing N N 350 TYR C O doub N N 351 TYR C OXT sing N N 352 TYR CB CG sing N N 353 TYR CB HB2 sing N N 354 TYR CB HB3 sing N N 355 TYR CG CD1 doub Y N 356 TYR CG CD2 sing Y N 357 TYR CD1 CE1 sing Y N 358 TYR CD1 HD1 sing N N 359 TYR CD2 CE2 doub Y N 360 TYR CD2 HD2 sing N N 361 TYR CE1 CZ doub Y N 362 TYR CE1 HE1 sing N N 363 TYR CE2 CZ sing Y N 364 TYR CE2 HE2 sing N N 365 TYR CZ OH sing N N 366 TYR OH HH sing N N 367 TYR OXT HXT sing N N 368 VAL N CA sing N N 369 VAL N H sing N N 370 VAL N H2 sing N N 371 VAL CA C sing N N 372 VAL CA CB sing N N 373 VAL CA HA sing N N 374 VAL C O doub N N 375 VAL C OXT sing N N 376 VAL CB CG1 sing N N 377 VAL CB CG2 sing N N 378 VAL CB HB sing N N 379 VAL CG1 HG11 sing N N 380 VAL CG1 HG12 sing N N 381 VAL CG1 HG13 sing N N 382 VAL CG2 HG21 sing N N 383 VAL CG2 HG22 sing N N 384 VAL CG2 HG23 sing N N 385 VAL OXT HXT sing N N 386 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FORMIC ACID' FMT 3 'ACETIC ACID' ACY 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3JYU _pdbx_initial_refinement_model.details 'PDB ENTRY 3JYU' #