HEADER CELL ADHESION 02-FEB-10 3LNE TITLE CRYSTAL STRUCTURE OF E-CADHERIN EC12 K14E COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 157-369; COMPND 5 SYNONYM: EPITHELIAL CADHERIN, E-CADHERIN, UVOMORULIN, ARC-1, E- COMPND 6 CAD/CTF1, E-CAD/CTF2, E-CAD/CTF3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CADHERIN, CALCIUM, CELL ADHESION, CELL JUNCTION, CELL MEMBRANE, KEYWDS 2 GLYCOPROTEIN, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN,O.HARRISON,L.SHAPIRO REVDAT 4 06-SEP-23 3LNE 1 REMARK REVDAT 3 13-OCT-21 3LNE 1 REMARK SEQADV LINK REVDAT 2 16-MAR-10 3LNE 1 JRNL REVDAT 1 02-MAR-10 3LNE 0 JRNL AUTH O.J.HARRISON,F.BAHNA,P.S.KATSAMBA,X.JIN,J.BRASCH,J.VENDOME, JRNL AUTH 2 G.AHLSEN,K.J.CARROLL,S.R.PRICE,B.HONIG,L.SHAPIRO JRNL TITL TWO-STEP ADHESIVE BINDING BY CLASSICAL CADHERINS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 348 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20190754 JRNL DOI 10.1038/NSMB.1784 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 19809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97897 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19964 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 0.75M SODIUM SULFATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.00050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.26800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.00050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.26800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 3 C ILE A 4 N -0.168 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 -62.49 -108.79 REMARK 500 ALA A 43 -86.95 -112.24 REMARK 500 GLU A 156 44.24 -92.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 GLU A 69 OE1 100.5 REMARK 620 3 GLU A 69 OE2 120.4 49.0 REMARK 620 4 ASP A 100 OD1 90.3 119.6 74.3 REMARK 620 5 GLN A 101 O 74.0 151.7 156.9 88.5 REMARK 620 6 ASP A 103 OD1 85.1 79.2 123.6 161.2 72.7 REMARK 620 7 ASP A 136 OD1 158.9 86.0 79.0 104.1 90.7 76.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 ASP A 67 OD2 90.2 REMARK 620 3 GLU A 69 OE1 84.8 90.4 REMARK 620 4 ASP A 103 OD2 91.3 161.7 107.9 REMARK 620 5 HOH A 269 O 170.8 93.6 86.8 87.7 REMARK 620 6 HOH A 345 O 94.4 88.0 178.3 73.6 94.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 105.1 REMARK 620 3 ASP A 134 OD1 152.6 90.5 REMARK 620 4 ASP A 134 OD2 149.0 91.3 49.4 REMARK 620 5 ASP A 136 OD2 74.9 80.0 130.8 82.4 REMARK 620 6 ASN A 143 O 81.1 172.9 85.2 81.6 98.5 REMARK 620 7 ASP A 195 OD2 73.6 92.6 83.5 132.7 144.5 92.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LND RELATED DB: PDB REMARK 900 RELATED ID: 3LNF RELATED DB: PDB REMARK 900 RELATED ID: 3LNG RELATED DB: PDB REMARK 900 RELATED ID: 3LNH RELATED DB: PDB REMARK 900 RELATED ID: 3LNI RELATED DB: PDB DBREF 3LNE A 1 213 UNP P09803 CADH1_MOUSE 157 369 SEQADV 3LNE GLU A 14 UNP P09803 LYS 170 ENGINEERED MUTATION SEQRES 1 A 213 ASP TRP VAL ILE PRO PRO ILE SER CYS PRO GLU ASN GLU SEQRES 2 A 213 GLU GLY GLU PHE PRO LYS ASN LEU VAL GLN ILE LYS SER SEQRES 3 A 213 ASN ARG ASP LYS GLU THR LYS VAL PHE TYR SER ILE THR SEQRES 4 A 213 GLY GLN GLY ALA ASP LYS PRO PRO VAL GLY VAL PHE ILE SEQRES 5 A 213 ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR GLN PRO SEQRES 6 A 213 LEU ASP ARG GLU ALA ILE ALA LYS TYR ILE LEU TYR SER SEQRES 7 A 213 HIS ALA VAL SER SER ASN GLY GLU ALA VAL GLU ASP PRO SEQRES 8 A 213 MET GLU ILE VAL ILE THR VAL THR ASP GLN ASN ASP ASN SEQRES 9 A 213 ARG PRO GLU PHE THR GLN GLU VAL PHE GLU GLY SER VAL SEQRES 10 A 213 ALA GLU GLY ALA VAL PRO GLY THR SER VAL MET LYS VAL SEQRES 11 A 213 SER ALA THR ASP ALA ASP ASP ASP VAL ASN THR TYR ASN SEQRES 12 A 213 ALA ALA ILE ALA TYR THR ILE VAL SER GLN ASP PRO GLU SEQRES 13 A 213 LEU PRO HIS LYS ASN MET PHE THR VAL ASN ARG ASP THR SEQRES 14 A 213 GLY VAL ILE SER VAL LEU THR SER GLY LEU ASP ARG GLU SEQRES 15 A 213 SER TYR PRO THR TYR THR LEU VAL VAL GLN ALA ALA ASP SEQRES 16 A 213 LEU GLN GLY GLU GLY LEU SER THR THR ALA LYS ALA VAL SEQRES 17 A 213 ILE THR VAL LYS ASP HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET GOL A 214 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 3(CA 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *302(H2 O) HELIX 1 1 LEU A 196 GLU A 199 5 4 SHEET 1 A 4 ILE A 7 PRO A 10 0 SHEET 2 A 4 MET A 92 THR A 99 1 O THR A 97 N ILE A 7 SHEET 3 A 4 LYS A 73 SER A 82 -1 N LEU A 76 O ILE A 94 SHEET 4 A 4 VAL A 34 THR A 39 -1 N SER A 37 O HIS A 79 SHEET 1 B 3 LYS A 19 GLN A 23 0 SHEET 2 B 3 TRP A 59 VAL A 62 -1 O LEU A 60 N VAL A 22 SHEET 3 B 3 PHE A 51 ILE A 53 -1 N ILE A 52 O LYS A 61 SHEET 1 C 2 GLU A 107 PHE A 108 0 SHEET 2 C 2 ALA A 132 THR A 133 -1 O THR A 133 N GLU A 107 SHEET 1 D 4 VAL A 112 ALA A 118 0 SHEET 2 D 4 SER A 202 LYS A 212 1 O VAL A 208 N PHE A 113 SHEET 3 D 4 THR A 186 ALA A 194 -1 N LEU A 189 O ALA A 207 SHEET 4 D 4 ALA A 147 ASP A 154 -1 N THR A 149 O GLN A 192 SHEET 1 E 3 SER A 126 LYS A 129 0 SHEET 2 E 3 VAL A 171 VAL A 174 -1 O ILE A 172 N MET A 128 SHEET 3 E 3 PHE A 163 VAL A 165 -1 N THR A 164 O SER A 173 LINK OE1 GLU A 11 CA CA A 301 1555 1555 2.53 LINK OE2 GLU A 11 CA CA A 303 1555 1555 2.67 LINK OD2 ASP A 67 CA CA A 303 1555 1555 2.62 LINK OE1 GLU A 69 CA CA A 301 1555 1555 2.63 LINK OE2 GLU A 69 CA CA A 301 1555 1555 2.63 LINK OE1 GLU A 69 CA CA A 303 1555 1555 2.57 LINK OD1 ASP A 100 CA CA A 301 1555 1555 2.44 LINK O GLN A 101 CA CA A 301 1555 1555 2.53 LINK OD1 ASN A 102 CA CA A 302 1555 1555 2.53 LINK OD1 ASP A 103 CA CA A 301 1555 1555 2.60 LINK OD2 ASP A 103 CA CA A 303 1555 1555 2.55 LINK O ASN A 104 CA CA A 302 1555 1555 2.37 LINK OD1 ASP A 134 CA CA A 302 1555 1555 2.62 LINK OD2 ASP A 134 CA CA A 302 1555 1555 2.65 LINK OD1 ASP A 136 CA CA A 301 1555 1555 2.55 LINK OD2 ASP A 136 CA CA A 302 1555 1555 2.45 LINK O ASN A 143 CA CA A 302 1555 1555 2.39 LINK OD2 ASP A 195 CA CA A 302 1555 1555 2.57 LINK O HOH A 269 CA CA A 303 1555 1555 2.66 LINK CA CA A 303 O HOH A 345 1555 1555 2.81 CISPEP 1 PHE A 17 PRO A 18 0 -2.94 CISPEP 2 PRO A 46 PRO A 47 0 -2.41 CISPEP 3 ASP A 154 PRO A 155 0 -3.16 CISPEP 4 LEU A 157 PRO A 158 0 0.65 SITE 1 AC1 6 GLU A 11 GLU A 69 ASP A 100 GLN A 101 SITE 2 AC1 6 ASP A 103 ASP A 136 SITE 1 AC2 6 ASN A 102 ASN A 104 ASP A 134 ASP A 136 SITE 2 AC2 6 ASN A 143 ASP A 195 SITE 1 AC3 6 GLU A 11 ASP A 67 GLU A 69 ASP A 103 SITE 2 AC3 6 HOH A 269 HOH A 345 SITE 1 AC4 3 HIS A 159 LYS A 160 ASN A 161 CRYST1 130.001 48.536 54.486 90.00 111.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007692 0.000000 0.003050 0.00000 SCALE2 0.000000 0.020603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019743 0.00000