HEADER CELL ADHESION 02-FEB-10 3LNG TITLE CRYSTAL STRUCTURE OF E-CADHERIN EC12 AA EXTENSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 157-369; COMPND 5 SYNONYM: EPITHELIAL CADHERIN, E-CADHERIN, UVOMORULIN, ARC-1, E- COMPND 6 CAD/CTF1, E-CAD/CTF2, E-CAD/CTF3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CADHERIN, CALCIUM, CELL ADHESION, CELL JUNCTION, CELL MEMBRANE, KEYWDS 2 CLEAVAGE ON PAIR OF BASIC RESIDUES, GLYCOPROTEIN, MEMBRANE, KEYWDS 3 TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR O.HARRISON,X.JIN,L.SHAPIRO REVDAT 3 06-SEP-23 3LNG 1 REMARK SEQADV LINK REVDAT 2 16-MAR-10 3LNG 1 JRNL REVDAT 1 02-MAR-10 3LNG 0 JRNL AUTH O.J.HARRISON,F.BAHNA,P.S.KATSAMBA,X.JIN,J.BRASCH,J.VENDOME, JRNL AUTH 2 G.AHLSEN,K.J.CARROLL,S.R.PRICE,B.HONIG,L.SHAPIRO JRNL TITL TWO-STEP ADHESIVE BINDING BY CLASSICAL CADHERINS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 348 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20190754 JRNL DOI 10.1038/NSMB.1784 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 79.5 REMARK 3 NUMBER OF REFLECTIONS : 12996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 702 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 799 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3254 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.92000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : 3.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.393 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3316 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4526 ; 1.343 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 6.798 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;40.256 ;26.027 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;14.145 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.390 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.321 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2512 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2118 ; 0.698 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3468 ; 1.307 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1198 ; 1.659 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1058 ; 3.024 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LNG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13698 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.4 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH 8.5, 1.3M AMMONIUM REMARK 280 SULFATE, 15% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.76800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.05400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.76800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.05400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 ASP A 1 REMARK 465 ALA B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ASP A 213 O HOH A 256 1.53 REMARK 500 N GLU A 156 O HOH A 248 1.73 REMARK 500 NH1 ARG A 28 O VAL A 88 1.86 REMARK 500 NH1 ARG B 105 O HOH B 215 1.94 REMARK 500 N GLU A 56 O HOH A 233 1.97 REMARK 500 OD1 ASP B 138 O HOH B 235 2.01 REMARK 500 OE1 GLU A 119 O HOH A 217 2.01 REMARK 500 N ALA A 87 O HOH A 238 2.02 REMARK 500 OG SER B 82 OD1 ASN B 84 2.05 REMARK 500 OE2 GLU B 156 CD LYS B 160 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 31 OE2 GLU B 31 2556 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 2 C VAL A 3 N -0.232 REMARK 500 TRP B 2 C VAL B 3 N -0.234 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 2 O - C - N ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 5 153.76 -48.33 REMARK 500 LEU A 21 -61.29 -106.17 REMARK 500 ARG A 28 -1.12 -54.01 REMARK 500 ALA A 43 -78.94 -114.90 REMARK 500 ALA A 70 -60.57 -91.39 REMARK 500 GLU A 156 34.89 -91.67 REMARK 500 ASN A 161 61.56 -116.18 REMARK 500 ARG B 28 -2.37 -53.90 REMARK 500 ALA B 43 -85.66 -124.98 REMARK 500 GLU B 156 43.33 -87.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP B 2 VAL B 3 149.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP A 2 13.17 REMARK 500 TRP B 2 20.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 69 OE2 106.6 REMARK 620 3 ASP A 100 OD1 87.6 79.2 REMARK 620 4 GLN A 101 O 86.8 160.3 87.2 REMARK 620 5 ASP A 103 OD1 91.7 111.6 168.8 81.7 REMARK 620 6 ASP A 136 OD1 171.2 81.6 97.3 86.2 82.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD1 90.1 REMARK 620 3 GLU A 69 OE1 91.4 83.2 REMARK 620 4 ASP A 103 OD2 98.2 161.2 113.2 REMARK 620 5 HOH A 234 O 172.7 93.7 82.9 80.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 113.1 REMARK 620 3 ASP A 134 OD2 143.2 94.5 REMARK 620 4 ASP A 134 OD1 148.1 86.2 51.7 REMARK 620 5 ASP A 136 OD2 77.1 81.9 132.9 81.2 REMARK 620 6 ASN A 143 O 70.7 175.5 83.1 89.3 96.9 REMARK 620 7 ASP A 195 OD2 73.0 102.2 77.9 129.6 148.9 81.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE2 REMARK 620 2 GLU B 69 OE2 101.9 REMARK 620 3 ASP B 100 OD1 79.9 82.3 REMARK 620 4 GLN B 101 O 85.3 159.5 80.1 REMARK 620 5 ASP B 103 OD1 87.6 115.6 160.1 83.6 REMARK 620 6 ASP B 136 OD1 171.6 83.0 107.7 92.4 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE1 REMARK 620 2 ASP B 67 OD1 88.2 REMARK 620 3 GLU B 69 OE1 91.1 89.3 REMARK 620 4 ASP B 103 OD2 97.2 148.5 121.4 REMARK 620 5 HOH B 217 O 176.5 95.3 88.7 80.0 REMARK 620 6 HOH B 236 O 81.5 67.9 156.1 82.2 100.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 102 OD1 REMARK 620 2 ASN B 104 O 103.2 REMARK 620 3 ASP B 134 OD2 157.7 85.3 REMARK 620 4 ASP B 134 OD1 148.0 89.5 50.7 REMARK 620 5 ASP B 136 OD2 76.9 78.5 125.2 77.0 REMARK 620 6 ASN B 143 O 83.1 173.3 89.6 83.9 101.0 REMARK 620 7 ASP B 195 OD2 81.8 89.3 77.7 128.3 152.2 93.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LND RELATED DB: PDB REMARK 900 RELATED ID: 3LNE RELATED DB: PDB REMARK 900 RELATED ID: 3LNF RELATED DB: PDB REMARK 900 RELATED ID: 3LNH RELATED DB: PDB REMARK 900 RELATED ID: 3LNI RELATED DB: PDB DBREF 3LNG A 1 213 UNP P09803 CADH1_MOUSE 157 369 DBREF 3LNG B 1 213 UNP P09803 CADH1_MOUSE 157 369 SEQADV 3LNG ALA A -1 UNP P09803 INSERTION SEQADV 3LNG ALA A 0 UNP P09803 INSERTION SEQADV 3LNG ALA B -1 UNP P09803 INSERTION SEQADV 3LNG ALA B 0 UNP P09803 INSERTION SEQRES 1 A 215 ALA ALA ASP TRP VAL ILE PRO PRO ILE SER CYS PRO GLU SEQRES 2 A 215 ASN GLU LYS GLY GLU PHE PRO LYS ASN LEU VAL GLN ILE SEQRES 3 A 215 LYS SER ASN ARG ASP LYS GLU THR LYS VAL PHE TYR SER SEQRES 4 A 215 ILE THR GLY GLN GLY ALA ASP LYS PRO PRO VAL GLY VAL SEQRES 5 A 215 PHE ILE ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR SEQRES 6 A 215 GLN PRO LEU ASP ARG GLU ALA ILE ALA LYS TYR ILE LEU SEQRES 7 A 215 TYR SER HIS ALA VAL SER SER ASN GLY GLU ALA VAL GLU SEQRES 8 A 215 ASP PRO MET GLU ILE VAL ILE THR VAL THR ASP GLN ASN SEQRES 9 A 215 ASP ASN ARG PRO GLU PHE THR GLN GLU VAL PHE GLU GLY SEQRES 10 A 215 SER VAL ALA GLU GLY ALA VAL PRO GLY THR SER VAL MET SEQRES 11 A 215 LYS VAL SER ALA THR ASP ALA ASP ASP ASP VAL ASN THR SEQRES 12 A 215 TYR ASN ALA ALA ILE ALA TYR THR ILE VAL SER GLN ASP SEQRES 13 A 215 PRO GLU LEU PRO HIS LYS ASN MET PHE THR VAL ASN ARG SEQRES 14 A 215 ASP THR GLY VAL ILE SER VAL LEU THR SER GLY LEU ASP SEQRES 15 A 215 ARG GLU SER TYR PRO THR TYR THR LEU VAL VAL GLN ALA SEQRES 16 A 215 ALA ASP LEU GLN GLY GLU GLY LEU SER THR THR ALA LYS SEQRES 17 A 215 ALA VAL ILE THR VAL LYS ASP SEQRES 1 B 215 ALA ALA ASP TRP VAL ILE PRO PRO ILE SER CYS PRO GLU SEQRES 2 B 215 ASN GLU LYS GLY GLU PHE PRO LYS ASN LEU VAL GLN ILE SEQRES 3 B 215 LYS SER ASN ARG ASP LYS GLU THR LYS VAL PHE TYR SER SEQRES 4 B 215 ILE THR GLY GLN GLY ALA ASP LYS PRO PRO VAL GLY VAL SEQRES 5 B 215 PHE ILE ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR SEQRES 6 B 215 GLN PRO LEU ASP ARG GLU ALA ILE ALA LYS TYR ILE LEU SEQRES 7 B 215 TYR SER HIS ALA VAL SER SER ASN GLY GLU ALA VAL GLU SEQRES 8 B 215 ASP PRO MET GLU ILE VAL ILE THR VAL THR ASP GLN ASN SEQRES 9 B 215 ASP ASN ARG PRO GLU PHE THR GLN GLU VAL PHE GLU GLY SEQRES 10 B 215 SER VAL ALA GLU GLY ALA VAL PRO GLY THR SER VAL MET SEQRES 11 B 215 LYS VAL SER ALA THR ASP ALA ASP ASP ASP VAL ASN THR SEQRES 12 B 215 TYR ASN ALA ALA ILE ALA TYR THR ILE VAL SER GLN ASP SEQRES 13 B 215 PRO GLU LEU PRO HIS LYS ASN MET PHE THR VAL ASN ARG SEQRES 14 B 215 ASP THR GLY VAL ILE SER VAL LEU THR SER GLY LEU ASP SEQRES 15 B 215 ARG GLU SER TYR PRO THR TYR THR LEU VAL VAL GLN ALA SEQRES 16 B 215 ALA ASP LEU GLN GLY GLU GLY LEU SER THR THR ALA LYS SEQRES 17 B 215 ALA VAL ILE THR VAL LYS ASP HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HETNAM CA CALCIUM ION FORMUL 3 CA 6(CA 2+) FORMUL 9 HOH *75(H2 O) HELIX 1 1 SER A 26 LYS A 30 5 5 HELIX 2 2 SER B 26 LYS B 30 5 5 SHEET 1 A 4 ILE A 7 PRO A 10 0 SHEET 2 A 4 ALA A 87 THR A 99 1 O THR A 97 N ILE A 7 SHEET 3 A 4 LYS A 73 SER A 82 -1 N LEU A 76 O ILE A 94 SHEET 4 A 4 VAL A 34 GLY A 40 -1 N PHE A 35 O VAL A 81 SHEET 1 B 3 LYS A 19 GLN A 23 0 SHEET 2 B 3 TRP A 59 VAL A 62 -1 O LEU A 60 N VAL A 22 SHEET 3 B 3 PHE A 51 ILE A 53 -1 N ILE A 52 O LYS A 61 SHEET 1 C 2 GLU A 107 PHE A 108 0 SHEET 2 C 2 ALA A 132 THR A 133 -1 O THR A 133 N GLU A 107 SHEET 1 D 4 VAL A 112 ALA A 118 0 SHEET 2 D 4 SER A 202 LYS A 212 1 O LYS A 212 N VAL A 117 SHEET 3 D 4 THR A 186 ALA A 194 -1 N LEU A 189 O ALA A 207 SHEET 4 D 4 ALA A 147 ASP A 154 -1 N VAL A 151 O VAL A 190 SHEET 1 E 3 SER A 126 LYS A 129 0 SHEET 2 E 3 VAL A 171 VAL A 174 -1 O ILE A 172 N VAL A 127 SHEET 3 E 3 PHE A 163 VAL A 165 -1 N THR A 164 O SER A 173 SHEET 1 F 4 ILE B 7 PRO B 10 0 SHEET 2 F 4 MET B 92 THR B 99 1 O THR B 97 N ILE B 7 SHEET 3 F 4 LYS B 73 SER B 82 -1 N LEU B 76 O ILE B 94 SHEET 4 F 4 VAL B 34 THR B 39 -1 N PHE B 35 O VAL B 81 SHEET 1 G 3 LYS B 19 GLN B 23 0 SHEET 2 G 3 TRP B 59 VAL B 62 -1 O LEU B 60 N VAL B 22 SHEET 3 G 3 PHE B 51 ILE B 53 -1 N ILE B 52 O LYS B 61 SHEET 1 H 2 GLU B 107 PHE B 108 0 SHEET 2 H 2 ALA B 132 THR B 133 -1 O THR B 133 N GLU B 107 SHEET 1 I 4 VAL B 112 ALA B 118 0 SHEET 2 I 4 SER B 202 LYS B 212 1 O LYS B 206 N PHE B 113 SHEET 3 I 4 THR B 186 ALA B 194 -1 N LEU B 189 O ALA B 207 SHEET 4 I 4 ALA B 147 ASP B 154 -1 N VAL B 151 O VAL B 190 SHEET 1 J 3 SER B 126 LYS B 129 0 SHEET 2 J 3 VAL B 171 VAL B 174 -1 O ILE B 172 N VAL B 127 SHEET 3 J 3 PHE B 163 VAL B 165 -1 N THR B 164 O SER B 173 LINK OE2 GLU A 11 CA CA A 302 1555 1555 2.34 LINK OE1 GLU A 11 CA CA A 303 1555 1555 2.47 LINK OD1 ASP A 67 CA CA A 303 1555 1555 2.49 LINK OE2 GLU A 69 CA CA A 302 1555 1555 2.00 LINK OE1 GLU A 69 CA CA A 303 1555 1555 2.15 LINK OD1 ASP A 100 CA CA A 302 1555 1555 2.21 LINK O GLN A 101 CA CA A 302 1555 1555 2.24 LINK OD1 ASN A 102 CA CA A 301 1555 1555 2.38 LINK OD1 ASP A 103 CA CA A 302 1555 1555 2.30 LINK OD2 ASP A 103 CA CA A 303 1555 1555 2.40 LINK O ASN A 104 CA CA A 301 1555 1555 2.25 LINK OD2 ASP A 134 CA CA A 301 1555 1555 2.41 LINK OD1 ASP A 134 CA CA A 301 1555 1555 2.53 LINK OD2 ASP A 136 CA CA A 301 1555 1555 2.37 LINK OD1 ASP A 136 CA CA A 302 1555 1555 2.40 LINK O ASN A 143 CA CA A 301 1555 1555 2.41 LINK OD2 ASP A 195 CA CA A 301 1555 1555 2.38 LINK O HOH A 234 CA CA A 303 1555 1555 1.88 LINK OE2 GLU B 11 CA CA B 302 1555 1555 2.37 LINK OE1 GLU B 11 CA CA B 303 1555 1555 2.48 LINK OD1 ASP B 67 CA CA B 303 1555 1555 2.19 LINK OE2 GLU B 69 CA CA B 302 1555 1555 2.28 LINK OE1 GLU B 69 CA CA B 303 1555 1555 2.00 LINK OD1 ASP B 100 CA CA B 302 1555 1555 2.29 LINK O GLN B 101 CA CA B 302 1555 1555 2.39 LINK OD1 ASN B 102 CA CA B 301 1555 1555 2.24 LINK OD1 ASP B 103 CA CA B 302 1555 1555 2.38 LINK OD2 ASP B 103 CA CA B 303 1555 1555 2.54 LINK O ASN B 104 CA CA B 301 1555 1555 2.42 LINK OD2 ASP B 134 CA CA B 301 1555 1555 2.50 LINK OD1 ASP B 134 CA CA B 301 1555 1555 2.65 LINK OD2 ASP B 136 CA CA B 301 1555 1555 2.54 LINK OD1 ASP B 136 CA CA B 302 1555 1555 2.36 LINK O ASN B 143 CA CA B 301 1555 1555 2.21 LINK OD2 ASP B 195 CA CA B 301 1555 1555 2.48 LINK O HOH B 217 CA CA B 303 1555 1555 2.22 LINK O HOH B 236 CA CA B 303 1555 1555 1.96 CISPEP 1 PHE A 17 PRO A 18 0 5.37 CISPEP 2 PRO A 46 PRO A 47 0 1.40 CISPEP 3 ASP A 154 PRO A 155 0 6.76 CISPEP 4 LEU A 157 PRO A 158 0 -3.44 CISPEP 5 PHE B 17 PRO B 18 0 -4.76 CISPEP 6 PRO B 46 PRO B 47 0 -1.82 CISPEP 7 ASP B 154 PRO B 155 0 4.58 CISPEP 8 LEU B 157 PRO B 158 0 2.87 SITE 1 AC1 6 ASN A 102 ASN A 104 ASP A 134 ASP A 136 SITE 2 AC1 6 ASN A 143 ASP A 195 SITE 1 AC2 6 GLU A 11 GLU A 69 ASP A 100 GLN A 101 SITE 2 AC2 6 ASP A 103 ASP A 136 SITE 1 AC3 6 GLU A 11 ASP A 67 GLU A 69 ASP A 103 SITE 2 AC3 6 HOH A 214 HOH A 234 SITE 1 AC4 6 ASN B 102 ASN B 104 ASP B 134 ASP B 136 SITE 2 AC4 6 ASN B 143 ASP B 195 SITE 1 AC5 6 GLU B 11 GLU B 69 ASP B 100 GLN B 101 SITE 2 AC5 6 ASP B 103 ASP B 136 SITE 1 AC6 6 GLU B 11 ASP B 67 GLU B 69 ASP B 103 SITE 2 AC6 6 HOH B 217 HOH B 236 CRYST1 121.536 80.108 72.691 90.00 118.76 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008228 0.000000 0.004516 0.00000 SCALE2 0.000000 0.012483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015693 0.00000