HEADER SIGNALING PROTEIN/SIGNALING PROTEIN 03-FEB-10 3LNY TITLE SECOND PDZ DOMAIN FROM HUMAN PTP1E IN COMPLEX WITH RA-GEF2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ2 DOMAIN; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1E, PTP-E1, HPTPE1, PTP-BAS, COMPND 6 PROTEIN-TYROSINE PHOSPHATASE PTPL1, FAS-ASSOCIATED PROTEIN-TYROSINE COMPND 7 PHOSPHATASE 1, FAP-1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RAP GUANINE NUCLEOTIDE EXCHANGE FACTOR 6; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: C-TERMINAL RESIDUES 1596-1601; COMPND 13 SYNONYM: PDZ DOMAIN-CONTAINING GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, COMPND 14 PDZ-GEF2, RA-GEF-2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN13, PNP1, PTP1E, PTPL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: RAPGEF6, PDZGEF2 KEYWDS PDZ2, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 2 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, CYTOSKELETON, CELL KEYWDS 3 MEMBRANE, GUANINE-NUCLEOTIDE RELEASING FACTOR, SIGNALING PROTEIN- KEYWDS 4 SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHANG,A.CHANG,H.KE,G.N.PHILLIPS JR.,A.L.LEE,CENTER FOR EUKARYOTIC AUTHOR 2 STRUCTURAL GENOMICS (CESG) REVDAT 4 21-FEB-24 3LNY 1 REMARK REVDAT 3 01-NOV-17 3LNY 1 REMARK REVDAT 2 28-SEP-16 3LNY 1 JRNL VERSN REVDAT 1 23-MAR-10 3LNY 0 JRNL AUTH J.ZHANG,P.J.SAPIENZA,H.KE,A.CHANG,S.R.HENGEL,H.WANG, JRNL AUTH 2 G.N.PHILLIPS,A.L.LEE JRNL TITL CRYSTALLOGRAPHIC AND NUCLEAR MAGNETIC RESONANCE EVALUATION JRNL TITL 2 OF THE IMPACT OF PEPTIDE BINDING TO THE SECOND PDZ DOMAIN OF JRNL TITL 3 PROTEIN TYROSINE PHOSPHATASE 1E. JRNL REF BIOCHEMISTRY V. 49 9280 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20839809 JRNL DOI 10.1021/BI101131F REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 34191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7030 - 3.1320 0.99 2468 152 0.1920 0.1870 REMARK 3 2 3.1320 - 2.4860 0.99 2367 144 0.1590 0.1940 REMARK 3 3 2.4860 - 2.1720 0.99 2344 144 0.1510 0.1990 REMARK 3 4 2.1720 - 1.9740 0.99 2344 143 0.1410 0.1770 REMARK 3 5 1.9740 - 1.8320 0.99 2318 142 0.1350 0.1510 REMARK 3 6 1.8320 - 1.7240 0.99 2308 143 0.1410 0.1670 REMARK 3 7 1.7240 - 1.6380 0.98 2294 140 0.1390 0.1800 REMARK 3 8 1.6380 - 1.5660 0.98 2312 142 0.1470 0.1920 REMARK 3 9 1.5660 - 1.5060 0.98 2262 138 0.1460 0.1870 REMARK 3 10 1.5060 - 1.4540 0.97 2292 141 0.1430 0.2100 REMARK 3 11 1.4540 - 1.4090 0.97 2256 138 0.1460 0.1950 REMARK 3 12 1.4090 - 1.3680 0.96 2232 136 0.1460 0.1990 REMARK 3 13 1.3680 - 1.3320 0.95 2225 139 0.1460 0.1850 REMARK 3 14 1.3320 - 1.3000 0.94 2195 132 0.1600 0.2110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 77.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.91700 REMARK 3 B22 (A**2) : -2.91700 REMARK 3 B33 (A**2) : 5.02700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 821 REMARK 3 ANGLE : 1.605 1102 REMARK 3 CHIRALITY : 0.091 131 REMARK 3 PLANARITY : 0.007 148 REMARK 3 DIHEDRAL : 15.696 299 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-07; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X29A; X29A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809; 1.0809 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.8 M (NH4)2SO4, 0.2 M REMARK 280 NASCN, 0.1 M NA CITRATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 36.98250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 21.35186 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.68533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 36.98250 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 21.35186 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.68533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 36.98250 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 21.35186 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.68533 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 36.98250 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 21.35186 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.68533 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 36.98250 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 21.35186 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.68533 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 36.98250 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 21.35186 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.68533 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 42.70371 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.37067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 42.70371 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.37067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 42.70371 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.37067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 42.70371 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.37067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 42.70371 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.37067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 42.70371 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.37067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -X+Y,-X,Z:-Y,X-Y, REMARK 300 Z:Y+2/3,X+1/3,-Z+1/3:X-Y+2/3,-Y+1/3,-Z+1/3,-X+2/3,-X+Y+1/3, -Z+1/3 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 36.98250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -64.05557 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 73.96500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 73.96500 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -42.70371 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 44.68533 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -42.70371 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 44.68533 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 36.98250 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 21.35186 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 44.68533 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 99 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 209 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 255 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 263 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 95 REMARK 465 THR A 96 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 31 116.03 -29.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SO4 A 98 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 97 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 98 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 99 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.102606 RELATED DB: TARGETDB DBREF 3LNY A 1 96 UNP Q12923 PTN13_HUMAN 1361 1456 DBREF 3LNY B 3 8 UNP Q8TEU7 RPGF6_HUMAN 1596 1601 SEQRES 1 A 96 PRO LYS PRO GLY ASP ILE PHE GLU VAL GLU LEU ALA LYS SEQRES 2 A 96 ASN ASP ASN SER LEU GLY ILE SER VAL THR GLY GLY VAL SEQRES 3 A 96 ASN THR SER VAL ARG HIS GLY GLY ILE TYR VAL LYS ALA SEQRES 4 A 96 VAL ILE PRO GLN GLY ALA ALA GLU SER ASP GLY ARG ILE SEQRES 5 A 96 HIS LYS GLY ASP ARG VAL LEU ALA VAL ASN GLY VAL SER SEQRES 6 A 96 LEU GLU GLY ALA THR HIS LYS GLN ALA VAL GLU THR LEU SEQRES 7 A 96 ARG ASN THR GLY GLN VAL VAL HIS LEU LEU LEU GLU LYS SEQRES 8 A 96 GLY GLN SER PRO THR SEQRES 1 B 6 GLU GLN VAL SER ALA VAL HET SCN A 97 3 HET SO4 A 98 4 HET SO4 A 99 5 HETNAM SCN THIOCYANATE ION HETNAM SO4 SULFATE ION FORMUL 3 SCN C N S 1- FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *238(H2 O) HELIX 1 1 VAL A 30 GLY A 33 5 4 HELIX 2 2 GLY A 44 GLY A 50 1 7 HELIX 3 3 THR A 70 ASN A 80 1 11 SHEET 1 A 4 ILE A 6 ALA A 12 0 SHEET 2 A 4 VAL A 84 GLU A 90 -1 O LEU A 89 N PHE A 7 SHEET 3 A 4 ARG A 57 VAL A 61 -1 N LEU A 59 O LEU A 88 SHEET 4 A 4 VAL A 64 SER A 65 -1 O VAL A 64 N VAL A 61 SHEET 1 B 3 ILE A 35 VAL A 40 0 SHEET 2 B 3 ILE A 20 GLY A 24 -1 N SER A 21 O LYS A 38 SHEET 3 B 3 VAL B 5 VAL B 8 -1 O SER B 6 N VAL A 22 SITE 1 AC1 5 ASN A 62 GLY A 63 HIS A 86 HOH A 251 SITE 2 AC1 5 HOH A 307 SITE 1 AC2 6 GLU A 76 THR A 77 ASN A 80 HOH A 121 SITE 2 AC2 6 HOH A 132 HOH A 162 SITE 1 AC3 3 ALA A 12 GLN A 83 VAL A 84 CRYST1 73.965 73.965 134.056 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013520 0.007806 0.000000 0.00000 SCALE2 0.000000 0.015611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007460 0.00000