HEADER ONCOPROTEIN 03-FEB-10 3LO5 TITLE CRYSTAL STRUCTURE OF THE DOMINANT NEGATIVE S17N MUTANT OF RAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A, C, E; COMPND 4 FRAGMENT: H-RAS (UNP RESIDUES 1-166); COMPND 5 SYNONYM: TRANSFORMING PROTEIN P21, P21RAS, H-RAS-1, C-H-RAS, HA-RAS, COMPND 6 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H-RAS, HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTB2 KEYWDS RAS, NUCLEOTIDE EXCHANGE, DOMINANT NEGATIVE, MG2+, ACETYLATION, CELL KEYWDS 2 MEMBRANE, DISEASE MUTATION, GOLGI APPARATUS, GTP-BINDING, KEYWDS 3 LIPOPROTEIN, MEMBRANE, METHYLATION, NUCLEOTIDE-BINDING, PALMITATE, KEYWDS 4 PRENYLATION, PROTO-ONCOGENE, S-NITROSYLATION, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.NASSAR,K.SINGH,M.GARCIA-DIAZ REVDAT 4 06-SEP-23 3LO5 1 REMARK REVDAT 3 13-OCT-21 3LO5 1 REMARK SEQADV LINK REVDAT 2 16-MAR-10 3LO5 1 JRNL REVDAT 1 02-MAR-10 3LO5 0 JRNL AUTH N.NASSAR,K.SINGH,M.GARCIA-DIAZ JRNL TITL STRUCTURE OF THE DOMINANT NEGATIVE S17N MUTANT OF RAS JRNL REF BIOCHEMISTRY V. 49 1970 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20131908 JRNL DOI 10.1021/BI9020742 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 17939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8155 - 4.9094 0.99 2568 141 0.2315 0.2784 REMARK 3 2 4.9094 - 3.8976 1.00 2474 135 0.2002 0.2785 REMARK 3 3 3.8976 - 3.4052 1.00 2466 125 0.2203 0.2771 REMARK 3 4 3.4052 - 3.0940 1.00 2460 126 0.2271 0.2874 REMARK 3 5 3.0940 - 2.8723 1.00 2427 141 0.2691 0.3122 REMARK 3 6 2.8723 - 2.7029 1.00 2426 123 0.2858 0.3296 REMARK 3 7 2.7029 - 2.5676 0.91 2204 123 0.2903 0.3538 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 51.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3635 REMARK 3 ANGLE : 0.734 4921 REMARK 3 CHIRALITY : 0.045 565 REMARK 3 PLANARITY : 0.002 624 REMARK 3 DIHEDRAL : 16.151 1327 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): -11.8215 -30.2536 -59.8049 REMARK 3 T TENSOR REMARK 3 T11: 0.0472 T22: 0.1448 REMARK 3 T33: 0.0497 T12: -0.0199 REMARK 3 T13: 0.0246 T23: -0.0887 REMARK 3 L TENSOR REMARK 3 L11: 2.8431 L22: 1.7262 REMARK 3 L33: 1.8191 L12: -0.1356 REMARK 3 L13: 0.4495 L23: -0.9373 REMARK 3 S TENSOR REMARK 3 S11: -0.1102 S12: 0.1104 S13: 0.3408 REMARK 3 S21: -0.0298 S22: -0.0424 S23: 0.0750 REMARK 3 S31: -0.1448 S32: -0.0120 S33: 0.0525 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 1:25 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 1:25 ) REMARK 3 ATOM PAIRS NUMBER : 181 REMARK 3 RMSD : 0.012 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 1:25 ) REMARK 3 SELECTION : CHAIN E AND (RESSEQ 1:25 ) REMARK 3 ATOM PAIRS NUMBER : 181 REMARK 3 RMSD : 0.011 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 40:57 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 40:56 ) REMARK 3 ATOM PAIRS NUMBER : 134 REMARK 3 RMSD : 0.051 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 40:57 ) REMARK 3 SELECTION : CHAIN E AND (RESSEQ 41:56 ) REMARK 3 ATOM PAIRS NUMBER : 122 REMARK 3 RMSD : 0.033 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 75:163 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 75:163 ) REMARK 3 ATOM PAIRS NUMBER : 703 REMARK 3 RMSD : 0.019 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 75:163 ) REMARK 3 SELECTION : CHAIN E AND (RESSEQ 115:163 ) REMARK 3 ATOM PAIRS NUMBER : 381 REMARK 3 RMSD : 0.013 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 2007 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI-MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : 0.57900 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4Q21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (V/V) PEG400, 13% (W/V) PEG8000, REMARK 280 0.2 M CALCIUM ACETATE, AND 0.1 M TRIS-HCL PH = 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.23750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.09200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.91000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.23750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.09200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.91000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.23750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.09200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.91000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.23750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.09200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA E 168 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 181 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 179 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 30 REMARK 465 GLU A 31 REMARK 465 TYR A 32 REMARK 465 ASP A 33 REMARK 465 PRO A 34 REMARK 465 THR A 35 REMARK 465 ILE A 36 REMARK 465 GLU A 37 REMARK 465 THR A 58 REMARK 465 ALA A 59 REMARK 465 GLY A 60 REMARK 465 GLN A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 465 MET A 67 REMARK 465 ARG A 68 REMARK 465 ASP A 69 REMARK 465 GLN A 70 REMARK 465 TYR A 71 REMARK 465 PHE C 28 REMARK 465 VAL C 29 REMARK 465 ASP C 30 REMARK 465 GLU C 31 REMARK 465 TYR C 32 REMARK 465 ASP C 33 REMARK 465 PRO C 34 REMARK 465 THR C 35 REMARK 465 ILE C 36 REMARK 465 GLU C 37 REMARK 465 ASP C 38 REMARK 465 ASP E 57 REMARK 465 THR E 58 REMARK 465 ALA E 59 REMARK 465 GLY E 60 REMARK 465 GLN E 61 REMARK 465 GLU E 62 REMARK 465 GLU E 63 REMARK 465 TYR E 64 REMARK 465 SER E 65 REMARK 465 ALA E 66 REMARK 465 MET E 67 REMARK 465 ARG E 68 REMARK 465 ASP E 69 REMARK 465 GLN E 70 REMARK 465 TYR E 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 29 CG1 CG2 REMARK 470 LEU A 56 CG CD1 CD2 REMARK 470 ARG A 128 NE CZ NH1 NH2 REMARK 470 SER C 39 OG REMARK 470 THR C 58 OG1 CG2 REMARK 470 GLN C 61 CG CD OE1 NE2 REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 GLU C 63 CG CD OE1 OE2 REMARK 470 TYR C 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER C 65 OG REMARK 470 MET C 67 CG SD CE REMARK 470 ARG C 68 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 69 CG OD1 OD2 REMARK 470 GLN C 70 CG CD OE1 NE2 REMARK 470 TYR C 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 107 CG OD1 OD2 REMARK 470 ILE E 36 CG1 CG2 CD1 REMARK 470 GLU E 37 CG CD OE1 OE2 REMARK 470 ASP E 38 CG OD1 OD2 REMARK 470 SER E 39 OG REMARK 470 TYR E 40 CD1 CD2 CE1 CE2 CZ OH REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 72 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 56 -116.75 -70.85 REMARK 500 ARG A 149 -3.40 81.39 REMARK 500 ASN C 26 63.97 68.63 REMARK 500 ASP C 57 81.83 171.59 REMARK 500 GLN C 61 -60.33 -137.54 REMARK 500 GLU C 63 -120.85 55.89 REMARK 500 TYR C 64 53.02 -166.74 REMARK 500 ARG C 68 112.26 59.98 REMARK 500 ASP C 69 -32.32 77.94 REMARK 500 ARG C 149 -3.07 81.66 REMARK 500 GLU E 37 58.95 -69.70 REMARK 500 ASP E 38 151.82 63.37 REMARK 500 SER E 39 -87.77 60.00 REMARK 500 TYR E 40 -135.90 143.78 REMARK 500 ARG E 41 111.82 93.41 REMARK 500 ASP E 105 54.68 34.62 REMARK 500 ARG E 149 -3.26 82.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 168 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP C 180 O1A REMARK 620 2 GDP C 180 O2B 81.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 167 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 33 OD2 REMARK 620 2 HOH E 176 O 154.4 REMARK 620 3 GDP E 180 O1A 106.1 96.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP E 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP C 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 168 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Q21 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF WILD-TYPE RAS. DBREF 3LO5 A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 3LO5 C 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 3LO5 E 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 3LO5 ASN A 17 UNP P01112 SER 17 ENGINEERED MUTATION SEQADV 3LO5 ASN C 17 UNP P01112 SER 17 ENGINEERED MUTATION SEQADV 3LO5 ASN E 17 UNP P01112 SER 17 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS ASN ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 C 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 C 166 VAL GLY LYS ASN ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 C 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 C 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 C 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 C 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 C 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 C 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 C 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 C 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 C 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 C 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 C 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 E 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 E 166 VAL GLY LYS ASN ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 E 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 E 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 E 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 E 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 E 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 E 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 E 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 E 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 E 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 E 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 E 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET GDP A 180 28 HET CA A 167 1 HET GDP C 180 28 HET SO4 C 167 5 HET CA C 168 1 HET GDP E 180 28 HET CA E 167 1 HET CA E 168 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 4 GDP 3(C10 H15 N5 O11 P2) FORMUL 5 CA 4(CA 2+) FORMUL 7 SO4 O4 S 2- FORMUL 12 HOH *66(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 ASN A 86 LYS A 104 1 19 HELIX 3 3 GLU A 126 GLY A 138 1 13 HELIX 4 4 GLY A 151 GLN A 165 1 15 HELIX 5 5 GLY C 15 GLN C 25 1 11 HELIX 6 6 ASP C 69 THR C 74 1 6 HELIX 7 7 ASN C 86 LYS C 104 1 19 HELIX 8 8 GLU C 126 GLY C 138 1 13 HELIX 9 9 GLY C 151 HIS C 166 1 16 HELIX 10 10 GLY E 15 ASN E 26 1 12 HELIX 11 11 ASN E 86 LYS E 104 1 19 HELIX 12 12 GLU E 126 GLY E 138 1 13 HELIX 13 13 GLY E 151 HIS E 166 1 16 SHEET 1 A 6 TYR A 40 ILE A 46 0 SHEET 2 A 6 GLU A 49 ILE A 55 -1 O GLU A 49 N ILE A 46 SHEET 3 A 6 THR A 2 VAL A 9 1 N TYR A 4 O ASP A 54 SHEET 4 A 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 B 6 TYR C 40 ILE C 46 0 SHEET 2 B 6 GLU C 49 ILE C 55 -1 O GLU C 49 N ILE C 46 SHEET 3 B 6 THR C 2 VAL C 9 1 N TYR C 4 O ASP C 54 SHEET 4 B 6 GLY C 77 ALA C 83 1 O LEU C 79 N VAL C 7 SHEET 5 B 6 MET C 111 ASN C 116 1 O ASN C 116 N PHE C 82 SHEET 6 B 6 TYR C 141 GLU C 143 1 O ILE C 142 N LEU C 113 SHEET 1 C 6 LYS E 42 ILE E 46 0 SHEET 2 C 6 GLU E 49 ILE E 55 -1 O GLU E 49 N ILE E 46 SHEET 3 C 6 THR E 2 VAL E 9 1 N THR E 2 O LEU E 52 SHEET 4 C 6 GLY E 77 ALA E 83 1 O VAL E 81 N VAL E 9 SHEET 5 C 6 MET E 111 ASN E 116 1 O ASN E 116 N PHE E 82 SHEET 6 C 6 TYR E 141 GLU E 143 1 O ILE E 142 N LEU E 113 LINK CA CA A 167 O1A GDP A 180 1555 1555 2.71 LINK CA CA C 168 O1A GDP C 180 1555 1555 2.82 LINK CA CA C 168 O2B GDP C 180 1555 1555 2.98 LINK OD2 ASP E 30 CA CA E 168 1555 1555 2.99 LINK OD2 ASP E 33 CA CA E 167 1555 1555 2.68 LINK CA CA E 167 O HOH E 176 1555 1555 2.85 LINK CA CA E 167 O1A GDP E 180 1555 1555 2.61 CISPEP 1 MET A 72 ARG A 73 0 2.36 CISPEP 2 ARG A 73 THR A 74 0 -9.44 CISPEP 3 THR C 58 ALA C 59 0 -1.78 CISPEP 4 GLN C 61 GLU C 62 0 -2.31 CISPEP 5 ALA C 66 MET C 67 0 0.96 CISPEP 6 MET C 67 ARG C 68 0 1.01 SITE 1 AC1 16 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 16 LYS A 16 ASN A 17 ALA A 18 PHE A 28 SITE 3 AC1 16 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 4 AC1 16 SER A 145 ALA A 146 LYS A 147 CA A 167 SITE 1 AC2 1 GDP A 180 SITE 1 AC3 20 GLY E 12 GLY E 13 VAL E 14 GLY E 15 SITE 2 AC3 20 LYS E 16 ASN E 17 ALA E 18 PHE E 28 SITE 3 AC3 20 ASP E 30 ASP E 33 ASN E 116 LYS E 117 SITE 4 AC3 20 ASP E 119 LEU E 120 SER E 145 ALA E 146 SITE 5 AC3 20 LYS E 147 CA E 167 HOH E 176 HOH E 181 SITE 1 AC4 15 GLY C 13 VAL C 14 GLY C 15 LYS C 16 SITE 2 AC4 15 ASN C 17 ALA C 18 ASN C 116 LYS C 117 SITE 3 AC4 15 ASP C 119 LEU C 120 SER C 145 ALA C 146 SITE 4 AC4 15 LYS C 147 CA C 168 HOH C 175 SITE 1 AC5 8 THR A 124 GLU A 126 GLN A 129 THR C 124 SITE 2 AC5 8 GLU C 126 GLN C 129 HOH C 183 THR E 124 SITE 1 AC6 1 GDP C 180 SITE 1 AC7 3 ASP E 33 HOH E 176 GDP E 180 SITE 1 AC8 2 ASP E 30 GLU E 31 CRYST1 92.475 102.184 117.820 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008488 0.00000