HEADER OXIDOREDUCTASE 04-FEB-10 3LOV TITLE CRYSTAL STRUCTURE OF PUTATIVE PROTOPORPHYRINOGEN OXIDASE TITLE 2 (YP_001813199.1) FROM EXIGUOBACTERIUM SP. 255-15 AT 2.06 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOPORPHYRINOGEN OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.3.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EXIGUOBACTERIUM SIBIRICUM; SOURCE 3 ORGANISM_TAXID: 262543; SOURCE 4 STRAIN: DSM 17290 / JCM 13490 / 255-15; SOURCE 5 GENE: EXIG_0701; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE PROTOPORPHYRINOGEN OXIDASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, FLAVIN CONTAINING AMINE OXIDOREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3LOV 1 REMARK SEQADV REVDAT 4 17-JUL-19 3LOV 1 REMARK LINK REVDAT 3 01-NOV-17 3LOV 1 REMARK REVDAT 2 13-JUL-11 3LOV 1 VERSN REVDAT 1 23-FEB-10 3LOV 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PROTOPORPHYRINOGEN OXIDASE JRNL TITL 2 (YP_001813199.1) FROM EXIGUOBACTERIUM SP. 255-15 AT 2.06 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1889 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2489 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 308 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.578 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3675 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2471 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5018 ; 1.566 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6058 ; 0.932 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 5.967 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;33.681 ;24.085 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 625 ;14.125 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.451 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4076 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 698 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2271 ; 1.911 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 922 ; 0.524 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3677 ; 3.124 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 5.242 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1331 ; 7.126 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 464 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2923 23.3291 80.0909 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. FLAVIN ADENINE DINUCLEOTIDE (FAD) FROM THE REMARK 3 CRYSTALLIZATION CONDITION WAS MODELED INTO THE STRUCTURE. REMARK 4 REMARK 4 3LOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97894,0.91837,0.97916 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 43.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.080 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.45 REMARK 200 R MERGE FOR SHELL (I) : 1.04000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M SODIUM ACETATE, 30.0000% REMARK 280 POLYETHYLENE GLYCOL 4000, 0.1M TRIS PH 8.5, ADDITIVE: 0.003 M REMARK 280 FLAVIN ADENINE DINUCLEOTIDE (FAD), 0.003 M NICOTINAMIDE ADENINE REMARK 280 DINUCLEOTIDE (NAD), NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.27950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.27100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.27100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 159.41925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.27100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.27100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.13975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.27100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.27100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 159.41925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.27100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.27100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.13975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 106.27950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 493 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 210 REMARK 465 ASP A 211 REMARK 465 GLN A 212 REMARK 465 LEU A 213 REMARK 465 PRO A 214 REMARK 465 GLN A 215 REMARK 465 THR A 216 REMARK 465 PRO A 217 REMARK 465 GLN A 218 REMARK 465 THR A 219 REMARK 465 THR A 220 REMARK 465 ILE A 221 REMARK 465 LYS A 222 REMARK 465 ALA A 223 REMARK 465 SER A 465 REMARK 465 HIS A 466 REMARK 465 THR A 467 REMARK 465 ASP A 468 REMARK 465 GLU A 469 REMARK 465 SER A 470 REMARK 465 VAL A 471 REMARK 465 ASN A 472 REMARK 465 GLU A 473 REMARK 465 THR A 474 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 64 CD NE CZ NH1 NH2 REMARK 470 THR A 224 OG1 CG2 REMARK 470 GLN A 226 CD OE1 NE2 REMARK 470 GLN A 320 CG CD OE1 NE2 REMARK 470 SER A 321 CB OG REMARK 470 GLU A 396 CG CD OE1 OE2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 30 O HOH A 630 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 87 -91.83 -147.83 REMARK 500 ASP A 93 -167.03 -123.77 REMARK 500 LEU A 165 -53.49 -124.60 REMARK 500 SER A 229 -168.26 -129.39 REMARK 500 ALA A 353 66.38 -165.67 REMARK 500 ASN A 368 80.61 -155.59 REMARK 500 ASP A 369 22.75 -144.46 REMARK 500 TYR A 441 -65.19 -101.03 REMARK 500 GLU A 463 38.11 -88.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396730 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3LOV A 1 474 UNP B1YKJ9 B1YKJ9_EXIS2 1 474 SEQADV 3LOV GLY A 0 UNP B1YKJ9 EXPRESSION TAG SEQRES 1 A 475 GLY MSE SER SER LYS ARG LEU VAL ILE VAL GLY GLY GLY SEQRES 2 A 475 ILE THR GLY LEU ALA ALA ALA TYR TYR ALA GLU ARG ALA SEQRES 3 A 475 PHE PRO ASP LEU ASN ILE THR LEU LEU GLU ALA GLY GLU SEQRES 4 A 475 ARG LEU GLY GLY LYS VAL ALA THR TYR ARG GLU ASP GLY SEQRES 5 A 475 PHE THR ILE GLU ARG GLY PRO ASP SER TYR VAL ALA ARG SEQRES 6 A 475 LYS HIS ILE LEU THR ASP LEU ILE GLU ALA ILE GLY LEU SEQRES 7 A 475 GLY GLU LYS LEU VAL ARG ASN ASN THR SER GLN ALA PHE SEQRES 8 A 475 ILE LEU ASP THR GLY GLY LEU HIS PRO ILE PRO LYS GLY SEQRES 9 A 475 ALA VAL MSE GLY ILE PRO THR ASP LEU ASP LEU PHE ARG SEQRES 10 A 475 GLN THR THR LEU LEU THR GLU GLU GLU LYS GLN GLU VAL SEQRES 11 A 475 ALA ASP LEU LEU LEU HIS PRO SER ASP SER LEU ARG ILE SEQRES 12 A 475 PRO GLU GLN ASP ILE PRO LEU GLY GLU TYR LEU ARG PRO SEQRES 13 A 475 ARG LEU GLY ASP ALA LEU VAL GLU LYS LEU ILE GLU PRO SEQRES 14 A 475 LEU LEU SER GLY ILE TYR ALA GLY ASN ILE ASP GLN MSE SEQRES 15 A 475 SER THR PHE ALA THR TYR PRO GLN PHE VAL ALA ASN GLU SEQRES 16 A 475 GLN LYS ALA GLY SER LEU PHE GLU GLY MSE ARG LEU MSE SEQRES 17 A 475 ARG PRO LEU ASP GLN LEU PRO GLN THR PRO GLN THR THR SEQRES 18 A 475 ILE LYS ALA THR GLY GLN PHE LEU SER LEU GLU THR GLY SEQRES 19 A 475 LEU GLU SER LEU ILE GLU ARG LEU GLU GLU VAL LEU GLU SEQRES 20 A 475 ARG SER GLU ILE ARG LEU GLU THR PRO LEU LEU ALA ILE SEQRES 21 A 475 SER ARG GLU ASP GLY ARG TYR ARG LEU LYS THR ASP HIS SEQRES 22 A 475 GLY PRO GLU TYR ALA ASP TYR VAL LEU LEU THR ILE PRO SEQRES 23 A 475 HIS PRO GLN VAL VAL GLN LEU LEU PRO ASP ALA HIS LEU SEQRES 24 A 475 PRO GLU LEU GLU GLN LEU THR THR HIS SER THR ALA THR SEQRES 25 A 475 VAL THR MSE ILE PHE ASP GLN GLN GLN SER LEU PRO ILE SEQRES 26 A 475 GLU GLY THR GLY PHE VAL VAL ASN ARG ARG ALA PRO TYR SEQRES 27 A 475 SER ILE THR ALA CYS THR ALA ILE ASP GLN LYS TRP ASN SEQRES 28 A 475 HIS SER ALA PRO ASP HIS THR VAL LEU ARG ALA PHE VAL SEQRES 29 A 475 GLY ARG PRO GLY ASN ASP HIS LEU VAL HIS GLU SER ASP SEQRES 30 A 475 GLU VAL LEU GLN GLN ALA VAL LEU GLN ASP LEU GLU LYS SEQRES 31 A 475 ILE CYS GLY ARG THR LEU GLU PRO LYS GLN VAL ILE ILE SEQRES 32 A 475 SER ARG LEU MSE ASP GLY LEU PRO ALA TYR THR VAL GLY SEQRES 33 A 475 HIS ALA ASP ARG ILE GLN ARG VAL ARG GLU GLU VAL LEU SEQRES 34 A 475 ALA GLN TYR PRO GLY ILE TYR LEU ALA GLY LEU ALA TYR SEQRES 35 A 475 ASP GLY VAL GLY LEU PRO ASP CYS VAL ALA SER ALA LYS SEQRES 36 A 475 THR MSE ILE GLU SER ILE GLU LEU GLU GLN SER HIS THR SEQRES 37 A 475 ASP GLU SER VAL ASN GLU THR MODRES 3LOV MSE A 1 MET SELENOMETHIONINE MODRES 3LOV MSE A 106 MET SELENOMETHIONINE MODRES 3LOV MSE A 181 MET SELENOMETHIONINE MODRES 3LOV MSE A 204 MET SELENOMETHIONINE MODRES 3LOV MSE A 207 MET SELENOMETHIONINE MODRES 3LOV MSE A 314 MET SELENOMETHIONINE MODRES 3LOV MSE A 406 MET SELENOMETHIONINE MODRES 3LOV MSE A 456 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 106 8 HET MSE A 181 8 HET MSE A 204 8 HET MSE A 207 8 HET MSE A 314 8 HET MSE A 406 8 HET MSE A 456 8 HET FAD A 500 53 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *308(H2 O) HELIX 1 1 GLY A 12 PHE A 26 1 15 HELIX 2 2 HIS A 66 ILE A 75 1 10 HELIX 3 3 LEU A 77 GLU A 79 5 3 HELIX 4 4 ASP A 111 ARG A 116 1 6 HELIX 5 5 THR A 122 HIS A 135 1 14 HELIX 6 6 PRO A 148 GLY A 158 1 11 HELIX 7 7 GLY A 158 LEU A 165 1 8 HELIX 8 8 LEU A 165 GLY A 172 1 8 HELIX 9 9 ILE A 173 ALA A 175 5 3 HELIX 10 10 TYR A 187 GLY A 198 1 12 HELIX 11 11 SER A 199 MSE A 207 1 9 HELIX 12 12 GLY A 233 LEU A 245 1 13 HELIX 13 13 PRO A 285 LEU A 293 1 9 HELIX 14 14 LEU A 298 GLN A 303 1 6 HELIX 15 15 ILE A 345 TRP A 349 1 5 HELIX 16 16 ASP A 369 GLU A 374 5 6 HELIX 17 17 SER A 375 GLY A 392 1 18 HELIX 18 18 GLY A 415 TYR A 431 1 17 HELIX 19 19 GLY A 445 GLU A 463 1 19 SHEET 1 A 5 GLU A 249 ARG A 251 0 SHEET 2 A 5 ASN A 30 LEU A 34 1 N LEU A 33 O ARG A 251 SHEET 3 A 5 ARG A 5 VAL A 9 1 N LEU A 6 O ASN A 30 SHEET 4 A 5 TYR A 279 LEU A 282 1 O LEU A 281 N VAL A 9 SHEET 5 A 5 ILE A 434 LEU A 436 1 O TYR A 435 N VAL A 280 SHEET 1 B 2 THR A 46 TYR A 47 0 SHEET 2 B 2 ILE A 54 GLU A 55 -1 O ILE A 54 N TYR A 47 SHEET 1 C 3 TYR A 61 VAL A 62 0 SHEET 2 C 3 PHE A 227 LEU A 230 -1 O LEU A 228 N TYR A 61 SHEET 3 C 3 LEU A 81 ARG A 83 -1 N VAL A 82 O SER A 229 SHEET 1 D 7 GLY A 96 PRO A 99 0 SHEET 2 D 7 ALA A 89 ASP A 93 -1 N ILE A 91 O HIS A 98 SHEET 3 D 7 GLY A 328 VAL A 331 1 O VAL A 330 N LEU A 92 SHEET 4 D 7 ILE A 339 ALA A 344 -1 O THR A 340 N VAL A 331 SHEET 5 D 7 HIS A 356 VAL A 363 -1 O ARG A 360 N THR A 343 SHEET 6 D 7 THR A 306 ASP A 317 -1 N MSE A 314 O LEU A 359 SHEET 7 D 7 GLN A 399 PRO A 410 -1 O LEU A 405 N THR A 309 SHEET 1 E 2 ALA A 104 VAL A 105 0 SHEET 2 E 2 ILE A 108 PRO A 109 -1 O ILE A 108 N VAL A 105 SHEET 1 F 3 ALA A 258 GLU A 262 0 SHEET 2 F 3 ARG A 265 LYS A 269 -1 O ARG A 267 N SER A 260 SHEET 3 F 3 GLU A 275 ALA A 277 -1 O GLU A 275 N LEU A 268 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N SER A 2 1555 1555 1.32 LINK C VAL A 105 N MSE A 106 1555 1555 1.34 LINK C MSE A 106 N GLY A 107 1555 1555 1.33 LINK C GLN A 180 N MSE A 181 1555 1555 1.34 LINK C MSE A 181 N SER A 182 1555 1555 1.32 LINK C GLY A 203 N MSE A 204 1555 1555 1.33 LINK C MSE A 204 N ARG A 205 1555 1555 1.33 LINK C LEU A 206 N MSE A 207 1555 1555 1.34 LINK C MSE A 207 N ARG A 208 1555 1555 1.34 LINK C THR A 313 N MSE A 314 1555 1555 1.33 LINK C MSE A 314 N ILE A 315 1555 1555 1.34 LINK C LEU A 405 N MSE A 406 1555 1555 1.34 LINK C MSE A 406 N ASP A 407 1555 1555 1.35 LINK C THR A 455 N MSE A 456 1555 1555 1.34 LINK C MSE A 456 N ILE A 457 1555 1555 1.32 SITE 1 AC1 36 VAL A 9 GLY A 10 GLY A 12 ILE A 13 SITE 2 AC1 36 THR A 14 LEU A 34 GLU A 35 ALA A 36 SITE 3 AC1 36 GLY A 42 LYS A 43 PRO A 58 ASP A 59 SITE 4 AC1 36 SER A 60 TYR A 174 PRO A 255 LEU A 256 SITE 5 AC1 36 ILE A 284 PRO A 285 GLN A 288 THR A 309 SITE 6 AC1 36 LEU A 409 GLY A 438 LEU A 439 VAL A 444 SITE 7 AC1 36 GLY A 445 LEU A 446 CYS A 449 HOH A 475 SITE 8 AC1 36 HOH A 479 HOH A 481 HOH A 484 HOH A 487 SITE 9 AC1 36 HOH A 494 HOH A 598 HOH A 623 HOH A 634 CRYST1 74.542 74.542 212.559 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004705 0.00000