data_3LOZ # _entry.id 3LOZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LOZ pdb_00003loz 10.2210/pdb3loz/pdb RCSB RCSB057549 ? ? WWPDB D_1000057549 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-09-19 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' Advisory 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3LOZ _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-02-04 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3LOW _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, C.' 1 'Sawaya, M.' 2 'Eisenberg, D.' 3 # _citation.id primary _citation.title 'Beta2-microglobulin forms three-dimensional domain-swapped amyloid fibrils with disulfide linkages.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 18 _citation.page_first 49 _citation.page_last 55 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21131979 _citation.pdbx_database_id_DOI 10.1038/nsmb.1948 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, C.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Eisenberg, D.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Beta-2-microglobulin segment LSFSKD' 696.770 4 ? ? ? ? 2 water nat water 18.015 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LSFSKD _entity_poly.pdbx_seq_one_letter_code_can LSFSKD _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 SER n 1 3 PHE n 1 4 SER n 1 5 LYS n 1 6 ASP n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 ASP 6 6 6 ASP ASP A . n B 1 1 LEU 1 1 1 LEU LEU B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 PHE 3 3 3 PHE PHE B . n B 1 4 SER 4 4 4 SER SER B . n B 1 5 LYS 5 5 5 LYS LYS B . n B 1 6 ASP 6 6 6 ASP ASP B . n C 1 1 LEU 1 1 1 LEU LEU C . n C 1 2 SER 2 2 2 SER SER C . n C 1 3 PHE 3 3 3 PHE PHE C . n C 1 4 SER 4 4 4 SER SER C . n C 1 5 LYS 5 5 5 LYS LYS C . n C 1 6 ASP 6 6 6 ASP ASP C . n D 1 1 LEU 1 1 1 LEU LEU D . n D 1 2 SER 2 2 2 SER SER D . n D 1 3 PHE 3 3 3 PHE PHE D . n D 1 4 SER 4 4 4 SER SER D . n D 1 5 LYS 5 5 5 LYS LYS D . n D 1 6 ASP 6 6 6 ASP ASP D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 7 4 HOH HOH A . E 2 HOH 2 12 12 HOH HOH A . E 2 HOH 3 13 13 HOH HOH A . E 2 HOH 4 17 17 HOH HOH A . F 2 HOH 1 7 7 HOH HOH B . F 2 HOH 2 8 5 HOH HOH B . F 2 HOH 3 9 6 HOH HOH B . F 2 HOH 4 10 10 HOH HOH B . F 2 HOH 5 16 16 HOH HOH B . G 2 HOH 1 8 8 HOH HOH C . G 2 HOH 2 14 14 HOH HOH C . G 2 HOH 3 15 15 HOH HOH C . H 2 HOH 1 7 1 HOH HOH D . H 2 HOH 2 8 2 HOH HOH D . H 2 HOH 3 9 9 HOH HOH D . H 2 HOH 4 10 3 HOH HOH D . H 2 HOH 5 11 11 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 D SER 4 ? CA B D SER 4 CA 2 1 Y 0 D SER 4 ? CB B D SER 4 CB 3 1 Y 0 D SER 4 ? OG B D SER 4 OG # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.5.0072 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XSCALE . ? ? ? ? 'data scaling' ? ? ? # _cell.length_a 9.425 _cell.length_b 21.482 _cell.length_c 45.731 _cell.angle_alpha 90.000 _cell.angle_beta 90.02 _cell.angle_gamma 90.000 _cell.entry_id 3LOZ _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3LOZ _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3LOZ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.66 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 25.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97910 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_wavelength_list 0.97910 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E # _reflns.entry_id 3LOZ _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 80.000 _reflns.number_obs 1656 _reflns.pdbx_Rmerge_I_obs 0.118 _reflns.pdbx_netI_over_sigmaI 8.300 _reflns.pdbx_chi_squared 2.393 _reflns.pdbx_redundancy 3.800 _reflns.percent_possible_obs 93.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.80 1.86 ? ? ? 0.501 ? ? 2.094 3.70 ? 150 82.00 1 1 1.86 1.94 ? ? ? 0.329 ? ? 2.411 3.60 ? 133 82.10 2 1 1.94 2.03 ? ? ? 0.247 ? ? 2.325 3.70 ? 147 88.60 3 1 2.03 2.13 ? ? ? 0.203 ? ? 2.719 3.70 ? 158 92.90 4 1 2.13 2.27 ? ? ? 0.215 ? ? 2.135 3.90 ? 174 97.20 5 1 2.27 2.44 ? ? ? 0.205 ? ? 2.493 4.10 ? 187 98.90 6 1 2.44 2.69 ? ? ? 0.189 ? ? 2.313 4.30 ? 163 100.00 7 1 2.69 3.08 ? ? ? 0.121 ? ? 2.928 4.00 ? 184 98.90 8 1 3.08 3.88 ? ? ? 0.076 ? ? 2.449 3.60 ? 172 98.90 9 1 3.88 80.00 ? ? ? 0.036 ? ? 1.980 3.50 ? 188 96.40 10 1 # _refine.entry_id 3LOZ _refine.ls_d_res_high 1.800 _refine.ls_d_res_low 22.860 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.990 _refine.ls_number_reflns_obs 1499 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_R_work 0.216 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.241 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.500 _refine.ls_number_reflns_R_free 175 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 16.931 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.250 _refine.aniso_B[2][2] 4.130 _refine.aniso_B[3][3] -1.880 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.050 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.971 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.242 _refine.pdbx_overall_ESU_R_Free 0.174 _refine.overall_SU_ML 0.136 _refine.overall_SU_B 4.689 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 34.22 _refine.B_iso_min 8.43 _refine.occupancy_max 1.00 _refine.occupancy_min 0.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 196 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 213 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 22.860 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 204 0.006 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 146 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 270 0.979 2.045 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 362 0.659 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 24 5.188 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 8 28.297 25.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 42 12.992 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 30 0.066 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 214 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 42 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 126 1.002 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 46 0.272 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 200 2.044 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 78 2.609 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 68 3.404 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 84.250 _refine_ls_shell.number_reflns_R_work 97 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.257 _refine_ls_shell.R_factor_R_free 0.281 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 10 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 107 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LOZ _struct.title 'Crystal structure of Beta 2 Microglobulin amyloidogenic segment LSFSKD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LOZ _struct_keywords.text 'steric zipper, beta spine, beta 2 microglobulin, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B2MG_HUMAN _struct_ref.pdbx_db_accession P61769 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LSFSKD _struct_ref.pdbx_align_begin 74 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LOZ A 1 ? 6 ? P61769 74 ? 79 ? 1 6 2 1 3LOZ B 1 ? 6 ? P61769 74 ? 79 ? 1 6 3 1 3LOZ C 1 ? 6 ? P61769 74 ? 79 ? 1 6 4 1 3LOZ D 1 ? 6 ? P61769 74 ? 79 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 1 3 C,D,G,H 1 2 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -9.4250000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 9.4250000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 2 ? SER A 4 ? SER A 2 SER A 4 A 2 SER B 2 ? SER B 4 ? SER B 2 SER B 4 B 1 SER C 2 ? SER C 4 ? SER C 2 SER C 4 B 2 SER D 2 ? SER D 4 ? SER D 2 SER D 4 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 3 ? N PHE A 3 O PHE B 3 ? O PHE B 3 B 1 2 N PHE C 3 ? N PHE C 3 O PHE D 3 ? O PHE D 3 # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASP N N N N 1 ASP CA C N S 2 ASP C C N N 3 ASP O O N N 4 ASP CB C N N 5 ASP CG C N N 6 ASP OD1 O N N 7 ASP OD2 O N N 8 ASP OXT O N N 9 ASP H H N N 10 ASP H2 H N N 11 ASP HA H N N 12 ASP HB2 H N N 13 ASP HB3 H N N 14 ASP HD2 H N N 15 ASP HXT H N N 16 HOH O O N N 17 HOH H1 H N N 18 HOH H2 H N N 19 LEU N N N N 20 LEU CA C N S 21 LEU C C N N 22 LEU O O N N 23 LEU CB C N N 24 LEU CG C N N 25 LEU CD1 C N N 26 LEU CD2 C N N 27 LEU OXT O N N 28 LEU H H N N 29 LEU H2 H N N 30 LEU HA H N N 31 LEU HB2 H N N 32 LEU HB3 H N N 33 LEU HG H N N 34 LEU HD11 H N N 35 LEU HD12 H N N 36 LEU HD13 H N N 37 LEU HD21 H N N 38 LEU HD22 H N N 39 LEU HD23 H N N 40 LEU HXT H N N 41 LYS N N N N 42 LYS CA C N S 43 LYS C C N N 44 LYS O O N N 45 LYS CB C N N 46 LYS CG C N N 47 LYS CD C N N 48 LYS CE C N N 49 LYS NZ N N N 50 LYS OXT O N N 51 LYS H H N N 52 LYS H2 H N N 53 LYS HA H N N 54 LYS HB2 H N N 55 LYS HB3 H N N 56 LYS HG2 H N N 57 LYS HG3 H N N 58 LYS HD2 H N N 59 LYS HD3 H N N 60 LYS HE2 H N N 61 LYS HE3 H N N 62 LYS HZ1 H N N 63 LYS HZ2 H N N 64 LYS HZ3 H N N 65 LYS HXT H N N 66 PHE N N N N 67 PHE CA C N S 68 PHE C C N N 69 PHE O O N N 70 PHE CB C N N 71 PHE CG C Y N 72 PHE CD1 C Y N 73 PHE CD2 C Y N 74 PHE CE1 C Y N 75 PHE CE2 C Y N 76 PHE CZ C Y N 77 PHE OXT O N N 78 PHE H H N N 79 PHE H2 H N N 80 PHE HA H N N 81 PHE HB2 H N N 82 PHE HB3 H N N 83 PHE HD1 H N N 84 PHE HD2 H N N 85 PHE HE1 H N N 86 PHE HE2 H N N 87 PHE HZ H N N 88 PHE HXT H N N 89 SER N N N N 90 SER CA C N S 91 SER C C N N 92 SER O O N N 93 SER CB C N N 94 SER OG O N N 95 SER OXT O N N 96 SER H H N N 97 SER H2 H N N 98 SER HA H N N 99 SER HB2 H N N 100 SER HB3 H N N 101 SER HG H N N 102 SER HXT H N N 103 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP N CA sing N N 1 ASP N H sing N N 2 ASP N H2 sing N N 3 ASP CA C sing N N 4 ASP CA CB sing N N 5 ASP CA HA sing N N 6 ASP C O doub N N 7 ASP C OXT sing N N 8 ASP CB CG sing N N 9 ASP CB HB2 sing N N 10 ASP CB HB3 sing N N 11 ASP CG OD1 doub N N 12 ASP CG OD2 sing N N 13 ASP OD2 HD2 sing N N 14 ASP OXT HXT sing N N 15 HOH O H1 sing N N 16 HOH O H2 sing N N 17 LEU N CA sing N N 18 LEU N H sing N N 19 LEU N H2 sing N N 20 LEU CA C sing N N 21 LEU CA CB sing N N 22 LEU CA HA sing N N 23 LEU C O doub N N 24 LEU C OXT sing N N 25 LEU CB CG sing N N 26 LEU CB HB2 sing N N 27 LEU CB HB3 sing N N 28 LEU CG CD1 sing N N 29 LEU CG CD2 sing N N 30 LEU CG HG sing N N 31 LEU CD1 HD11 sing N N 32 LEU CD1 HD12 sing N N 33 LEU CD1 HD13 sing N N 34 LEU CD2 HD21 sing N N 35 LEU CD2 HD22 sing N N 36 LEU CD2 HD23 sing N N 37 LEU OXT HXT sing N N 38 LYS N CA sing N N 39 LYS N H sing N N 40 LYS N H2 sing N N 41 LYS CA C sing N N 42 LYS CA CB sing N N 43 LYS CA HA sing N N 44 LYS C O doub N N 45 LYS C OXT sing N N 46 LYS CB CG sing N N 47 LYS CB HB2 sing N N 48 LYS CB HB3 sing N N 49 LYS CG CD sing N N 50 LYS CG HG2 sing N N 51 LYS CG HG3 sing N N 52 LYS CD CE sing N N 53 LYS CD HD2 sing N N 54 LYS CD HD3 sing N N 55 LYS CE NZ sing N N 56 LYS CE HE2 sing N N 57 LYS CE HE3 sing N N 58 LYS NZ HZ1 sing N N 59 LYS NZ HZ2 sing N N 60 LYS NZ HZ3 sing N N 61 LYS OXT HXT sing N N 62 PHE N CA sing N N 63 PHE N H sing N N 64 PHE N H2 sing N N 65 PHE CA C sing N N 66 PHE CA CB sing N N 67 PHE CA HA sing N N 68 PHE C O doub N N 69 PHE C OXT sing N N 70 PHE CB CG sing N N 71 PHE CB HB2 sing N N 72 PHE CB HB3 sing N N 73 PHE CG CD1 doub Y N 74 PHE CG CD2 sing Y N 75 PHE CD1 CE1 sing Y N 76 PHE CD1 HD1 sing N N 77 PHE CD2 CE2 doub Y N 78 PHE CD2 HD2 sing N N 79 PHE CE1 CZ doub Y N 80 PHE CE1 HE1 sing N N 81 PHE CE2 CZ sing Y N 82 PHE CE2 HE2 sing N N 83 PHE CZ HZ sing N N 84 PHE OXT HXT sing N N 85 SER N CA sing N N 86 SER N H sing N N 87 SER N H2 sing N N 88 SER CA C sing N N 89 SER CA CB sing N N 90 SER CA HA sing N N 91 SER C O doub N N 92 SER C OXT sing N N 93 SER CB OG sing N N 94 SER CB HB2 sing N N 95 SER CB HB3 sing N N 96 SER OG HG sing N N 97 SER OXT HXT sing N N 98 # _atom_sites.entry_id 3LOZ _atom_sites.fract_transf_matrix[1][1] 0.106101 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.046551 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021867 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_