HEADER HYDROLASE 05-FEB-10 3LPA TITLE CRYSTAL STRUCTURE OF A SUBTILISIN-LIKE PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACIDIC EXTRACELLULAR SUBTILISIN-LIKE PROTEASE APRV2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 131-470; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICHELOBACTER NODOSUS; SOURCE 3 ORGANISM_TAXID: 246195; SOURCE 4 STRAIN: VCS1703A; SOURCE 5 GENE: APRV2, DNO_1167; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA-GAMI(DE3)LYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PROTEASE, SUBTILASE, VIRULENCE FACTOR, HYDROLASE, SERINE PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.PORTER,W.WONG,J.C.WHISSTOCK,J.I.ROOD,R.M.KENNAN REVDAT 3 01-NOV-23 3LPA 1 REMARK LINK REVDAT 2 15-DEC-10 3LPA 1 JRNL REVDAT 1 08-DEC-10 3LPA 0 JRNL AUTH R.M.KENNAN,W.WONG,O.P.DHUNGYEL,X.HAN,D.WONG,D.PARKER, JRNL AUTH 2 C.J.ROSADO,R.H.P.LAW,S.MCGOWAN,S.B.REEVE,V.LEVINA, JRNL AUTH 3 G.A.POWERS,R.N.PIKE,S.P.BOTTOMLEY,A.I.SMITH,I.MARSH, JRNL AUTH 4 R.J.WHITTINGTON,J.C.WHISSTOCK,C.J.PORTER,J.I.ROOD JRNL TITL THE SUBTILISIN-LIKE PROTEASE APRV2 IS REQUIRED FOR VIRULENCE JRNL TITL 2 AND USES A NOVEL DISULPHIDE-TETHERED EXOSITE TO BIND JRNL TITL 3 SUBSTRATES JRNL REF PLOS PATHOG. V. 6 01210 2010 JRNL REFN ISSN 1553-7366 JRNL PMID 21124876 JRNL DOI 10.1371/JOURNAL.PPAT.1001210 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 17664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 915 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1166 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2495 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : -0.03000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.231 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2550 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3483 ; 1.343 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 6.163 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;37.145 ;24.602 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;13.743 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.354 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2002 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1676 ; 0.947 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2671 ; 1.488 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 874 ; 1.091 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 812 ; 1.622 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9701 -10.7657 -16.7273 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.0634 REMARK 3 T33: 0.0605 T12: 0.0212 REMARK 3 T13: 0.0034 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.4949 L22: 0.4840 REMARK 3 L33: 0.0465 L12: 0.6117 REMARK 3 L13: 0.0920 L23: 0.1323 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: -0.0100 S13: 0.0350 REMARK 3 S21: -0.0577 S22: 0.0133 S23: -0.0237 REMARK 3 S31: 0.0103 S32: 0.0103 S33: 0.0178 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5628 -7.8338 -4.1872 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.1823 REMARK 3 T33: 0.0368 T12: -0.0126 REMARK 3 T13: 0.0075 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.8370 L22: 0.6158 REMARK 3 L33: 0.4849 L12: 0.5158 REMARK 3 L13: 0.0276 L23: -0.0819 REMARK 3 S TENSOR REMARK 3 S11: 0.1517 S12: -0.5081 S13: 0.0947 REMARK 3 S21: -0.0087 S22: -0.1666 S23: 0.0459 REMARK 3 S31: -0.0113 S32: -0.1057 S33: 0.0148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17666 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.659 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.26500 REMARK 200 R SYM FOR SHELL (I) : 0.26500 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LPC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, SODIUM CACODYLATE, PEG REMARK 280 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 17 CD NE CZ NH1 NH2 REMARK 470 ARG A 48 NE CZ NH1 NH2 REMARK 470 ARG A 99 NE CZ NH1 NH2 REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 145 OD1 OD2 REMARK 470 ASP A 308 CG OD1 OD2 REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 15 -22.09 -141.72 REMARK 500 ASN A 34 25.75 48.57 REMARK 500 ASP A 41 -151.45 -162.32 REMARK 500 ALA A 114 45.17 -153.85 REMARK 500 ARG A 120 -42.39 66.59 REMARK 500 ALA A 127 72.39 -113.31 REMARK 500 ARG A 263 -88.50 -111.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 361 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 5 OD1 REMARK 620 2 ASP A 49 OD1 156.5 REMARK 620 3 ASP A 49 OD2 150.0 51.8 REMARK 620 4 VAL A 116 O 98.0 83.8 95.2 REMARK 620 5 ASN A 119 OD1 78.7 78.4 130.1 81.3 REMARK 620 6 ILE A 121 O 86.6 88.2 85.3 169.3 90.2 REMARK 620 7 VAL A 123 O 79.6 123.7 76.0 81.0 149.7 109.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 360 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 59 OD2 REMARK 620 2 ASP A 69 OD2 85.2 REMARK 620 3 ASP A 74 OD2 113.0 106.7 REMARK 620 4 ASP A 74 OD1 81.3 66.4 49.8 REMARK 620 5 ASP A 76 O 90.4 175.4 76.6 114.6 REMARK 620 6 HOH A 373 O 95.4 91.8 146.8 158.1 87.0 REMARK 620 7 HOH A 398 O 164.5 81.1 78.0 99.6 103.0 78.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 362 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD2 REMARK 620 2 ASP A 69 OD1 52.3 REMARK 620 3 ASP A 71 OD1 93.7 81.3 REMARK 620 4 ASP A 71 O 122.4 70.1 77.5 REMARK 620 5 GLY A 72 O 158.5 149.2 92.4 79.1 REMARK 620 6 ASP A 74 OD1 70.8 122.2 94.2 164.3 88.2 REMARK 620 7 HOH A 347 O 96.5 103.0 169.4 94.8 78.9 91.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 362 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LPC RELATED DB: PDB REMARK 900 RELATED ID: 3LPD RELATED DB: PDB DBREF 3LPA A 2 341 UNP A5EXI3 A5EXI3_DICNV 131 470 SEQRES 1 A 340 ALA PRO ASN ASP GLN HIS TYR ARG GLU GLN TRP HIS TYR SEQRES 2 A 340 PHE ASP ARG TYR GLY VAL LYS ALA ASP LYS VAL TRP ASP SEQRES 3 A 340 MET GLY PHE THR GLY GLN ASN VAL VAL VAL ALA VAL VAL SEQRES 4 A 340 ASP THR GLY ILE LEU HIS HIS ARG ASP LEU ASN ALA ASN SEQRES 5 A 340 VAL LEU PRO GLY TYR ASP PHE ILE SER ASN SER GLN ILE SEQRES 6 A 340 SER LEU ASP GLY ASP GLY ARG ASP ALA ASP PRO PHE ASP SEQRES 7 A 340 GLU GLY ASP TRP PHE ASP ASN TRP ALA CYS GLY GLY TYR SEQRES 8 A 340 PRO ASP PRO ARG LYS GLU ARG SER ASP SER SER TRP HIS SEQRES 9 A 340 GLY SER HIS VAL ALA GLY THR ILE ALA ALA VAL THR ASN SEQRES 10 A 340 ASN ARG ILE GLY VAL ALA GLY VAL ALA TYR GLY ALA LYS SEQRES 11 A 340 VAL VAL PRO VAL ARG ALA LEU GLY ARG CYS GLY GLY TYR SEQRES 12 A 340 ASP SER ASP ILE SER ASP GLY LEU TYR TRP ALA ALA GLY SEQRES 13 A 340 GLY ARG ILE ALA GLY ILE PRO GLU ASN ARG ASN PRO ALA SEQRES 14 A 340 LYS VAL ILE ASN MET SER LEU GLY SER ASP GLY GLN CYS SEQRES 15 A 340 SER TYR ASN ALA GLN THR MET ILE ASP ARG ALA THR ARG SEQRES 16 A 340 LEU GLY ALA LEU VAL VAL VAL ALA ALA GLY ASN GLU ASN SEQRES 17 A 340 GLN ASN ALA SER ASN THR TRP PRO THR SER CYS ASN ASN SEQRES 18 A 340 VAL LEU SER VAL GLY ALA THR THR SER ARG GLY ILE ARG SEQRES 19 A 340 ALA SER PHE SER ASN TYR GLY VAL ASP VAL ASP LEU ALA SEQRES 20 A 340 ALA PRO GLY GLN ASP ILE LEU SER THR VAL ASP SER GLY SEQRES 21 A 340 THR ARG ARG PRO VAL SER ASP ALA TYR SER PHE MET ALA SEQRES 22 A 340 GLY THR SER MET ALA THR PRO HIS VAL SER GLY VAL ALA SEQRES 23 A 340 ALA LEU VAL ILE SER ALA ALA ASN SER VAL ASN LYS ASN SEQRES 24 A 340 LEU THR PRO ALA GLU LEU LYS ASP VAL LEU VAL SER THR SEQRES 25 A 340 THR SER PRO PHE ASN GLY ARG LEU ASP ARG ALA LEU GLY SEQRES 26 A 340 SER GLY ILE VAL ASP ALA GLU ALA ALA VAL ASN SER VAL SEQRES 27 A 340 LEU GLY HET CA A 360 1 HET CA A 361 1 HET CA A 362 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *154(H2 O) HELIX 1 1 HIS A 7 GLU A 10 5 4 HELIX 2 2 GLN A 11 ASP A 16 1 6 HELIX 3 3 LYS A 21 ASP A 27 1 7 HELIX 4 4 LEU A 50 VAL A 54 5 5 HELIX 5 5 ASN A 63 LEU A 68 1 6 HELIX 6 6 ASP A 94 GLU A 98 5 5 HELIX 7 7 TRP A 104 ALA A 115 1 12 HELIX 8 8 TYR A 144 GLY A 157 1 14 HELIX 9 9 SER A 184 LEU A 197 1 14 HELIX 10 10 ASN A 211 SER A 213 5 3 HELIX 11 11 GLY A 275 VAL A 297 1 23 HELIX 12 12 THR A 302 THR A 313 1 12 HELIX 13 13 ASP A 331 GLY A 341 1 11 SHEET 1 A 7 TYR A 58 ASP A 59 0 SHEET 2 A 7 LYS A 131 ARG A 136 1 O ARG A 136 N TYR A 58 SHEET 3 A 7 VAL A 36 ASP A 41 1 N VAL A 37 O LYS A 131 SHEET 4 A 7 VAL A 172 MET A 175 1 O ASN A 174 N ALA A 38 SHEET 5 A 7 LEU A 200 ALA A 204 1 O VAL A 202 N MET A 175 SHEET 6 A 7 LEU A 224 THR A 229 1 O LEU A 224 N VAL A 203 SHEET 7 A 7 LEU A 247 PRO A 250 1 O LEU A 247 N GLY A 227 SHEET 1 B 2 SER A 179 ASP A 180 0 SHEET 2 B 2 THR A 215 TRP A 216 -1 O TRP A 216 N SER A 179 SHEET 1 C 2 ILE A 254 ASP A 259 0 SHEET 2 C 2 ASP A 268 MET A 273 -1 O ALA A 269 N VAL A 258 SSBOND 1 CYS A 89 CYS A 141 1555 1555 2.03 SSBOND 2 CYS A 183 CYS A 220 1555 1555 2.02 LINK OD1 ASP A 5 CA CA A 361 1555 1555 2.18 LINK OD1 ASP A 49 CA CA A 361 1555 1555 2.45 LINK OD2 ASP A 49 CA CA A 361 1555 1555 2.63 LINK OD2 ASP A 59 CA CA A 360 1555 1555 2.32 LINK OD2 ASP A 69 CA CA A 360 1555 1555 2.40 LINK OD2 ASP A 69 CA CA A 362 1555 1555 2.44 LINK OD1 ASP A 69 CA CA A 362 1555 1555 2.52 LINK OD1 ASP A 71 CA CA A 362 1555 1555 2.37 LINK O ASP A 71 CA CA A 362 1555 1555 2.50 LINK O GLY A 72 CA CA A 362 1555 1555 2.20 LINK OD2 ASP A 74 CA CA A 360 1555 1555 2.51 LINK OD1 ASP A 74 CA CA A 360 1555 1555 2.68 LINK OD1 ASP A 74 CA CA A 362 1555 1555 2.37 LINK O ASP A 76 CA CA A 360 1555 1555 2.30 LINK O VAL A 116 CA CA A 361 1555 1555 2.32 LINK OD1 ASN A 119 CA CA A 361 1555 1555 2.41 LINK O ILE A 121 CA CA A 361 1555 1555 2.44 LINK O VAL A 123 CA CA A 361 1555 1555 2.48 LINK O HOH A 347 CA CA A 362 1555 1555 2.35 LINK CA CA A 360 O HOH A 373 1555 1555 2.16 LINK CA CA A 360 O HOH A 398 1555 1555 2.36 CISPEP 1 CYS A 89 GLY A 90 0 -29.09 CISPEP 2 TYR A 92 PRO A 93 0 8.21 CISPEP 3 TRP A 216 PRO A 217 0 6.57 SITE 1 AC1 6 ASP A 59 ASP A 69 ASP A 74 ASP A 76 SITE 2 AC1 6 HOH A 373 HOH A 398 SITE 1 AC2 6 ASP A 5 ASP A 49 VAL A 116 ASN A 119 SITE 2 AC2 6 ILE A 121 VAL A 123 SITE 1 AC3 5 ASP A 69 ASP A 71 GLY A 72 ASP A 74 SITE 2 AC3 5 HOH A 347 CRYST1 43.059 45.980 47.243 97.79 115.24 113.86 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023224 0.010272 0.015918 0.00000 SCALE2 0.000000 0.023781 0.009541 0.00000 SCALE3 0.000000 0.000000 0.025215 0.00000