HEADER DNA 06-FEB-10 3LPV TITLE X-RAY CRYSTAL STRUCTURE OF DUPLEX DNA CONTAINING A CISPLATIN 1,2- TITLE 2 D(GPG) INTRASTRAND CROSS-LINK COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3'; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3'; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC OLIGONUCLEOTIDE; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: SYNTHETIC OLIGONUCLEOTIDE KEYWDS CISPLATIN, DNA EXPDTA X-RAY DIFFRACTION AUTHOR R.C.TODD,S.J.LIPPARD REVDAT 3 06-SEP-23 3LPV 1 REMARK LINK REVDAT 2 01-NOV-17 3LPV 1 REMARK REVDAT 1 11-AUG-10 3LPV 0 JRNL AUTH R.C.TODD,S.J.LIPPARD JRNL TITL STRUCTURE OF DUPLEX DNA CONTAINING THE CISPLATIN JRNL TITL 2 1,2-{PT(NH(3))(2)}(2+)-D(GPG) CROSS-LINK AT 1.77A JRNL TITL 3 RESOLUTION. JRNL REF J.INORG.BIOCHEM. V. 104 902 2010 JRNL REFN ISSN 0162-0134 JRNL PMID 20541266 JRNL DOI 10.1016/J.JINORGBIO.2010.04.005 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 16745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 891 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1112 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 972 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 1.75000 REMARK 3 B23 (A**2) : 1.31000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.234 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1105 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1704 ; 1.883 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 504 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 96 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 131 ; 0.105 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 485 ; 0.265 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 360 ; 0.263 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 231 ; 0.074 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.041 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1 ; 0.315 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1104 ; 1.895 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1704 ; 2.840 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : RH COATED FLAT MIRROR, TOROIDAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17639 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1AIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 120 MM MAGNESIUM ACETATE, 50 MM SODIUM REMARK 280 CACODYLATE PH 6.5, 28% W/V PEG-4000, 1 MM SPERMINE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 17 O3' DA B 17 C3' -0.040 REMARK 500 DA B 22 O3' DA B 22 C3' -0.050 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 5 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DG A 6 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DG A 7 C5 - N7 - C8 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG B 16 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG B 16 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA B 17 C4' - C3' - C2' ANGL. DEV. = -4.7 DEGREES REMARK 500 DC B 18 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA B 22 O4' - C4' - C3' ANGL. DEV. = -3.7 DEGREES REMARK 500 DG B 23 O5' - P - OP2 ANGL. DEV. = -6.0 DEGREES REMARK 500 DG B 23 O4' - C4' - C3' ANGL. DEV. = -3.7 DEGREES REMARK 500 DG B 23 C4' - C3' - C2' ANGL. DEV. = -7.4 DEGREES REMARK 500 DC C 25 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT C 27 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DT C 27 C4 - C5 - C7 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT C 27 C6 - C5 - C7 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 30 C4 - C5 - N7 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 30 C5 - N7 - C8 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG C 30 N7 - C8 - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG C 30 C5 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG D 40 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA D 41 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 DC D 42 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 NUMBERING OF WATER MOLECULES IN THE PUBLICATION TEXT REFER THE LAST REMARK 600 THREE DIGITS OF THE HOH RESIDUE NUMBER IN THE PDB FILE. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT A 49 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 N7 REMARK 620 2 CPT A 49 N1 90.9 REMARK 620 3 CPT A 49 N2 177.3 87.9 REMARK 620 4 DG A 7 N7 90.9 178.0 90.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1054 O REMARK 620 2 HOH B1055 O 174.4 REMARK 620 3 HOH B1056 O 95.6 83.3 REMARK 620 4 HOH B1057 O 99.9 85.7 99.5 REMARK 620 5 HOH B1058 O 86.9 87.7 91.6 166.3 REMARK 620 6 HOH B1059 O 92.1 89.0 172.3 79.2 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1143 O REMARK 620 2 HOH B1144 O 93.3 REMARK 620 3 HOH B1145 O 86.4 179.4 REMARK 620 4 HOH B1146 O 179.5 86.3 94.1 REMARK 620 5 HOH B1147 O 90.6 87.4 93.1 89.1 REMARK 620 6 HOH B1148 O 89.8 92.4 87.1 90.5 179.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT C 50 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 30 N7 REMARK 620 2 CPT C 50 N1 97.3 REMARK 620 3 CPT C 50 N2 177.4 85.2 REMARK 620 4 DG C 31 N7 89.1 172.8 88.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D1060 O REMARK 620 2 HOH D1061 O 90.9 REMARK 620 3 HOH D1062 O 95.2 172.2 REMARK 620 4 HOH D1063 O 89.9 92.2 83.0 REMARK 620 5 HOH D1064 O 89.6 91.9 93.0 175.9 REMARK 620 6 HOH D1065 O 162.6 74.0 99.2 82.1 99.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D2003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D1137 O REMARK 620 2 HOH D1138 O 89.4 REMARK 620 3 HOH D1139 O 90.2 179.6 REMARK 620 4 HOH D1140 O 179.2 91.4 89.0 REMARK 620 5 HOH D1141 O 90.2 90.9 88.9 89.8 REMARK 620 6 HOH D1142 O 90.0 88.6 91.5 90.0 179.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 49 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT C 50 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 2003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AIO RELATED DB: PDB DBREF 3LPV A 1 12 PDB 3LPV 3LPV 1 12 DBREF 3LPV C 25 36 PDB 3LPV 3LPV 25 36 DBREF 3LPV B 13 24 PDB 3LPV 3LPV 13 24 DBREF 3LPV D 37 48 PDB 3LPV 3LPV 37 48 SEQRES 1 A 12 DC DC DT DC DT DG DG DT DC DT DC DC SEQRES 1 B 12 DG DG DA DG DA DC DC DA DG DA DG DG SEQRES 1 C 12 DC DC DT DC DT DG DG DT DC DT DC DC SEQRES 1 D 12 DG DG DA DG DA DC DC DA DG DA DG DG HET CPT A 49 3 HET MG B2002 1 HET MG B2004 1 HET CPT C 50 3 HET MG D2001 1 HET MG D2003 1 HETNAM CPT CISPLATIN HETNAM MG MAGNESIUM ION HETSYN CPT DIAMMINE(DICHLORO)PLATINUM FORMUL 5 CPT 2(CL2 H6 N2 PT) FORMUL 6 MG 4(MG 2+) FORMUL 11 HOH *148(H2 O) LINK N7 DG A 6 PT1 CPT A 49 1555 1555 2.07 LINK N7 DG A 7 PT1 CPT A 49 1555 1555 2.11 LINK O HOH B1054 MG MG B2002 1555 1555 2.05 LINK O HOH B1055 MG MG B2002 1555 1555 2.10 LINK O HOH B1056 MG MG B2002 1555 1555 1.92 LINK O HOH B1057 MG MG B2002 1555 1555 2.02 LINK O HOH B1058 MG MG B2002 1555 1555 2.12 LINK O HOH B1059 MG MG B2002 1555 1555 2.28 LINK O HOH B1143 MG MG B2004 1555 1555 2.17 LINK O HOH B1144 MG MG B2004 1555 1555 2.16 LINK O HOH B1145 MG MG B2004 1555 1555 2.18 LINK O HOH B1146 MG MG B2004 1555 1555 2.18 LINK O HOH B1147 MG MG B2004 1555 1555 2.20 LINK O HOH B1148 MG MG B2004 1555 1555 2.17 LINK N7 DG C 30 PT1 CPT C 50 1555 1555 1.99 LINK N7 DG C 31 PT1 CPT C 50 1555 1555 2.10 LINK O HOH D1060 MG MG D2001 1555 1555 2.07 LINK O HOH D1061 MG MG D2001 1555 1555 2.14 LINK O HOH D1062 MG MG D2001 1555 1555 2.14 LINK O HOH D1063 MG MG D2001 1555 1555 2.16 LINK O HOH D1064 MG MG D2001 1555 1555 2.14 LINK O HOH D1065 MG MG D2001 1555 1555 2.07 LINK O HOH D1137 MG MG D2003 1555 1555 2.19 LINK O HOH D1138 MG MG D2003 1555 1555 2.18 LINK O HOH D1139 MG MG D2003 1555 1555 2.18 LINK O HOH D1140 MG MG D2003 1555 1555 2.18 LINK O HOH D1141 MG MG D2003 1555 1555 2.17 LINK O HOH D1142 MG MG D2003 1555 1555 2.18 SITE 1 AC1 6 DT A 5 DG A 6 DG A 7 HOH A1053 SITE 2 AC1 6 HOH A1074 HOH A1076 SITE 1 AC2 6 HOH B1054 HOH B1055 HOH B1056 HOH B1057 SITE 2 AC2 6 HOH B1058 HOH B1059 SITE 1 AC3 6 HOH B1143 HOH B1144 HOH B1145 HOH B1146 SITE 2 AC3 6 HOH B1147 HOH B1148 SITE 1 AC4 6 DT C 29 DG C 30 DG C 31 HOH C1020 SITE 2 AC4 6 HOH C1073 HOH C1121 SITE 1 AC5 6 HOH D1060 HOH D1061 HOH D1062 HOH D1063 SITE 2 AC5 6 HOH D1064 HOH D1065 SITE 1 AC6 6 HOH D1137 HOH D1138 HOH D1139 HOH D1140 SITE 2 AC6 6 HOH D1141 HOH D1142 CRYST1 31.303 35.425 45.128 80.06 84.09 81.77 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031946 -0.004621 -0.002600 0.00000 SCALE2 0.000000 0.028522 -0.004634 0.00000 SCALE3 0.000000 0.000000 0.022570 0.00000