HEADER TRANSPORT PROTEIN 10-FEB-10 3LR1 TITLE THE CRYSTAL STRUCTURE OF THE TUNGSTATE ABC TRANSPORTER FROM TITLE 2 GEOBACTER SULFURREDUCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUNGSTATE ABC TRANSPORTER, PERIPLASMIC TUNGSTATE- COMPND 3 BINDING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 3 ORGANISM_TAXID: 243231; SOURCE 4 STRAIN: PCA; SOURCE 5 GENE: GSU2700; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS THE TUNGSTATE ABC TRANSPORTER, PERIPLASMIC TUNGSTATE-BINDING KEYWDS 2 PROTEIN, STRUCTURAL GENOMICS, PSI, MCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, KEYWDS 4 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,L.VOLKART,K.BUCK,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 1 16-MAR-10 3LR1 0 JRNL AUTH R.ZHANG,L.VOLKART,K.BUCK,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE TUNGSTATE ABC JRNL TITL 2 TRANSPORTER FROM GEOBACTER SULFURREDUCENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 19739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1068 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1414 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1776 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.341 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1814 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1241 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2447 ; 1.954 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3047 ; 1.085 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 6.916 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;37.775 ;24.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;17.306 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1991 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 346 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1145 ; 1.800 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 476 ; 0.556 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1837 ; 2.829 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 669 ; 4.707 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 610 ; 6.860 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3055 ; 2.028 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 50 REMARK 3 RESIDUE RANGE : A 51 A 100 REMARK 3 RESIDUE RANGE : A 101 A 150 REMARK 3 RESIDUE RANGE : A 151 A 200 REMARK 3 RESIDUE RANGE : A 201 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0430 15.0430 8.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.0443 T22: 0.0717 REMARK 3 T33: 0.1069 T12: -0.0033 REMARK 3 T13: 0.0195 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.8669 L22: 0.5024 REMARK 3 L33: 1.7225 L12: -0.0500 REMARK 3 L13: -0.2440 L23: 0.1551 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.1101 S13: 0.0268 REMARK 3 S21: -0.0743 S22: -0.0132 S23: -0.0640 REMARK 3 S31: -0.0984 S32: -0.0930 S33: 0.0276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3LR1 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-10. REMARK 100 THE RCSB ID CODE IS RCSB057622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL3000 REMARK 200 DATA SCALING SOFTWARE : HKL3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19739 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.81700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000_SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS- REMARK 280 TRIS, 25% PEG3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.58050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.58050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.86800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.19300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.86800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.19300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.58050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.86800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.19300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.58050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.86800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.19300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLU A 189 REMARK 465 LYS A 190 REMARK 465 GLY A 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A -1 N GLU A 2 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 271 O HOH A 385 6554 1.64 REMARK 500 NE ARG A 161 O HOH A 255 8455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 11 CB SER A 11 OG 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 1 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 3 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 THR A 180 CB - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 VAL A 209 CG1 - CB - CG2 ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 1 -36.81 62.02 REMARK 500 ALA A 59 79.00 -170.76 REMARK 500 ASN A 81 166.90 74.70 REMARK 500 ASP A 91 71.35 34.05 REMARK 500 ASP A 120 -152.78 -140.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 0 GLU A 1 -36.07 REMARK 500 LYS A 121 SER A 122 -148.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 1 19.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 236 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC62934.2 RELATED DB: TARGETDB DBREF 3LR1 A 1 233 UNP Q749P2 Q749P2_GEOSL 24 256 SEQADV 3LR1 SER A -2 UNP Q749P2 EXPRESSION TAG SEQADV 3LR1 ASN A -1 UNP Q749P2 EXPRESSION TAG SEQADV 3LR1 ALA A 0 UNP Q749P2 EXPRESSION TAG SEQRES 1 A 236 SER ASN ALA GLU GLU ARG LEU LYS MSE SER THR THR THR SEQRES 2 A 236 SER THR GLN ASP SER GLY LEU LEU LYS VAL LEU LEU PRO SEQRES 3 A 236 PRO PHE GLU LYS LYS ASN ASN VAL LYS VAL ASP VAL ILE SEQRES 4 A 236 ALA VAL GLY THR GLY GLN ALA LEU LYS LEU GLY GLU ALA SEQRES 5 A 236 GLY ASP VAL ASP VAL VAL PHE VAL HIS ALA ARG LYS LEU SEQRES 6 A 236 GLU ASP LYS PHE VAL ALA ASP GLY PHE GLY VAL ASN ARG SEQRES 7 A 236 LYS ASP VAL MSE TYR ASN ASP PHE VAL ILE VAL GLY PRO SEQRES 8 A 236 LYS ASN ASP PRO ALA GLY ILE ALA LYS ALA LYS THR ALA SEQRES 9 A 236 ALA GLU ALA LEU LYS LEU LEU ALA THR LYS GLY ALA THR SEQRES 10 A 236 PHE ILE SER ARG GLY ASP LYS SER GLY THR HIS THR LYS SEQRES 11 A 236 GLU LEU ASP LEU TRP LYS SER ALA GLY VAL ASP PRO LYS SEQRES 12 A 236 GLY ASN TRP TYR VAL GLU ALA GLY GLN GLY MSE GLY PRO SEQRES 13 A 236 VAL ILE THR MSE ALA THR GLU ARG ARG ALA TYR THR LEU SEQRES 14 A 236 THR ASP ARG GLY THR TYR ASN ALA PHE LYS GLY ALA LYS SEQRES 15 A 236 THR ASP LEU VAL ILE LEU PHE GLN GLY GLU LYS GLY LEU SEQRES 16 A 236 PHE ASN PRO TYR GLY ILE MSE ALA VAL ASN PRO LYS LYS SEQRES 17 A 236 PHE PRO HIS VAL LYS TYR ASP LEU ALA MSE LYS LEU ILE SEQRES 18 A 236 ASP TYR VAL THR GLY PRO GLU GLY LEU LYS ILE ILE SER SEQRES 19 A 236 ASP TYR MODRES 3LR1 MSE A 6 MET SELENOMETHIONINE MODRES 3LR1 MSE A 79 MET SELENOMETHIONINE MODRES 3LR1 MSE A 151 MET SELENOMETHIONINE MODRES 3LR1 MSE A 157 MET SELENOMETHIONINE MODRES 3LR1 MSE A 199 MET SELENOMETHIONINE MODRES 3LR1 MSE A 215 MET SELENOMETHIONINE HET MSE A 6 8 HET MSE A 79 8 HET MSE A 151 8 HET MSE A 157 8 HET MSE A 199 8 HET MSE A 215 8 HET W A 234 1 HET W A 235 1 HET GOL A 236 6 HETNAM MSE SELENOMETHIONINE HETNAM W TUNGSTEN ION HETNAM GOL GLYCEROL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 W 2(W 6+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *173(H2 O) HELIX 1 1 THR A 10 GLY A 16 1 7 HELIX 2 2 GLY A 16 ASN A 30 1 15 HELIX 3 3 GLY A 39 ALA A 49 1 11 HELIX 4 4 ALA A 59 ASP A 69 1 11 HELIX 5 5 GLY A 94 ALA A 98 5 5 HELIX 6 6 THR A 100 GLY A 112 1 13 HELIX 7 7 SER A 122 ALA A 135 1 14 HELIX 8 8 GLY A 150 ARG A 162 1 13 HELIX 9 9 ARG A 169 LYS A 176 1 8 HELIX 10 10 LYS A 210 THR A 222 1 13 HELIX 11 11 GLY A 223 TYR A 233 1 11 SHEET 1 A 5 LYS A 32 VAL A 38 0 SHEET 2 A 5 ARG A 3 THR A 9 1 N MSE A 6 O ASP A 34 SHEET 3 A 5 VAL A 54 VAL A 57 1 O PHE A 56 N SER A 7 SHEET 4 A 5 ASN A 194 VAL A 201 -1 O GLY A 197 N VAL A 57 SHEET 5 A 5 GLY A 72 TYR A 80 -1 N VAL A 73 O ALA A 200 SHEET 1 B 5 TYR A 144 GLU A 146 0 SHEET 2 B 5 PHE A 115 SER A 117 1 N SER A 117 O VAL A 145 SHEET 3 B 5 TYR A 164 ASP A 168 1 O TYR A 164 N ILE A 116 SHEET 4 B 5 PHE A 83 GLY A 87 -1 N VAL A 84 O THR A 167 SHEET 5 B 5 VAL A 183 GLN A 187 -1 O PHE A 186 N ILE A 85 LINK C LYS A 5 N MSE A 6 1555 1555 1.30 LINK C MSE A 6 N SER A 7 1555 1555 1.32 LINK C VAL A 78 N MSE A 79 1555 1555 1.34 LINK C MSE A 79 N TYR A 80 1555 1555 1.32 LINK C GLY A 150 N MSE A 151 1555 1555 1.33 LINK C MSE A 151 N GLY A 152 1555 1555 1.32 LINK C THR A 156 N MSE A 157 1555 1555 1.34 LINK C MSE A 157 N ALA A 158 1555 1555 1.34 LINK C ILE A 198 N MSE A 199 1555 1555 1.34 LINK C MSE A 199 N ALA A 200 1555 1555 1.32 LINK C ALA A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N LYS A 216 1555 1555 1.33 SITE 1 AC1 6 GLY A 39 THR A 40 GLY A 41 GLN A 42 SITE 2 AC1 6 LYS A 121 HOH A 315 CRYST1 69.736 70.386 91.161 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010970 0.00000