data_3LSE
#
_entry.id 3LSE
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3LSE pdb_00003lse 10.2210/pdb3lse/pdb
RCSB RCSB057670 ? ?
WWPDB D_1000057670 ? ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 3LSD
_pdbx_database_related.details 'N-Domain of human adhesion/growth-regulatory galectin-9'
_pdbx_database_related.content_type unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3LSE
_pdbx_database_status.recvd_initial_deposition_date 2010-02-12
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Ruiz, F.M.' 1
'Romero, A.' 2
#
_citation.id primary
_citation.title
;N-domain of human adhesion/growth-regulatory galectin-9: preference for distinct conformers and non-sialylated N-glycans and detection of ligand-induced structural changes in crystal and solution.
;
_citation.journal_abbrev 'Int.J.Biochem.Cell Biol.'
_citation.journal_volume 42
_citation.page_first 1019
_citation.page_last 1029
_citation.year 2010
_citation.journal_id_ASTM ?
_citation.country UK
_citation.journal_id_ISSN 1357-2725
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 20227520
_citation.pdbx_database_id_DOI 10.1016/j.biocel.2010.03.007
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Solis, D.' 1 ?
primary 'Mate, M.J.' 2 ?
primary 'Lohr, M.' 3 ?
primary 'Ribeiro, J.P.' 4 ?
primary 'Lopez-Merino, L.' 5 ?
primary 'Andre, S.' 6 ?
primary 'Buzamet, E.' 7 ?
primary 'Canada, F.J.' 8 ?
primary 'Kaltner, H.' 9 ?
primary 'Lensch, M.' 10 ?
primary 'Ruiz, F.M.' 11 ?
primary 'Haroske, G.' 12 ?
primary 'Wollina, U.' 13 ?
primary 'Kloor, M.' 14 ?
primary 'Kopitz, J.' 15 ?
primary 'Saiz, J.L.' 16 ?
primary 'Menendez, M.' 17 ?
primary 'Jimenez-Barbero, J.' 18 ?
primary 'Romero, A.' 19 ?
primary 'Gabius, H.J.' 20 ?
#
_cell.entry_id 3LSE
_cell.length_a 32.387
_cell.length_b 32.387
_cell.length_c 232.208
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3LSE
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man Galectin-9 15864.775 1 ? ? 'N-terminal domain, residues 6-148' ?
2 branched man 'beta-D-galactopyranose-(1-4)-beta-D-glucopyranose' 342.297 1 ? ? ? ?
#
loop_
_entity_name_com.entity_id
_entity_name_com.name
1 'Gal-9, HOM-HD-21, Ecalectin'
2 beta-lactose
#
_entity_name_sys.entity_id 1
_entity_name_sys.name 'Gal-9, HOM-HD-21, Ecalectin'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;SQAPYLSPAVPFSGTIQGGLQDGLQITVNGTVLSSSGTRFAVNFQTGFSGNDIAFHFNPRFEDGGYVVCNTRQNGSWGPE
ERKTHMPFQKGMPFDLCFLVQSSDFKVMVNGILFVQYFHRVPFHRVDTISVNGSVQLSYISFQ
;
_entity_poly.pdbx_seq_one_letter_code_can
;SQAPYLSPAVPFSGTIQGGLQDGLQITVNGTVLSSSGTRFAVNFQTGFSGNDIAFHFNPRFEDGGYVVCNTRQNGSWGPE
ERKTHMPFQKGMPFDLCFLVQSSDFKVMVNGILFVQYFHRVPFHRVDTISVNGSVQLSYISFQ
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 SER n
1 2 GLN n
1 3 ALA n
1 4 PRO n
1 5 TYR n
1 6 LEU n
1 7 SER n
1 8 PRO n
1 9 ALA n
1 10 VAL n
1 11 PRO n
1 12 PHE n
1 13 SER n
1 14 GLY n
1 15 THR n
1 16 ILE n
1 17 GLN n
1 18 GLY n
1 19 GLY n
1 20 LEU n
1 21 GLN n
1 22 ASP n
1 23 GLY n
1 24 LEU n
1 25 GLN n
1 26 ILE n
1 27 THR n
1 28 VAL n
1 29 ASN n
1 30 GLY n
1 31 THR n
1 32 VAL n
1 33 LEU n
1 34 SER n
1 35 SER n
1 36 SER n
1 37 GLY n
1 38 THR n
1 39 ARG n
1 40 PHE n
1 41 ALA n
1 42 VAL n
1 43 ASN n
1 44 PHE n
1 45 GLN n
1 46 THR n
1 47 GLY n
1 48 PHE n
1 49 SER n
1 50 GLY n
1 51 ASN n
1 52 ASP n
1 53 ILE n
1 54 ALA n
1 55 PHE n
1 56 HIS n
1 57 PHE n
1 58 ASN n
1 59 PRO n
1 60 ARG n
1 61 PHE n
1 62 GLU n
1 63 ASP n
1 64 GLY n
1 65 GLY n
1 66 TYR n
1 67 VAL n
1 68 VAL n
1 69 CYS n
1 70 ASN n
1 71 THR n
1 72 ARG n
1 73 GLN n
1 74 ASN n
1 75 GLY n
1 76 SER n
1 77 TRP n
1 78 GLY n
1 79 PRO n
1 80 GLU n
1 81 GLU n
1 82 ARG n
1 83 LYS n
1 84 THR n
1 85 HIS n
1 86 MET n
1 87 PRO n
1 88 PHE n
1 89 GLN n
1 90 LYS n
1 91 GLY n
1 92 MET n
1 93 PRO n
1 94 PHE n
1 95 ASP n
1 96 LEU n
1 97 CYS n
1 98 PHE n
1 99 LEU n
1 100 VAL n
1 101 GLN n
1 102 SER n
1 103 SER n
1 104 ASP n
1 105 PHE n
1 106 LYS n
1 107 VAL n
1 108 MET n
1 109 VAL n
1 110 ASN n
1 111 GLY n
1 112 ILE n
1 113 LEU n
1 114 PHE n
1 115 VAL n
1 116 GLN n
1 117 TYR n
1 118 PHE n
1 119 HIS n
1 120 ARG n
1 121 VAL n
1 122 PRO n
1 123 PHE n
1 124 HIS n
1 125 ARG n
1 126 VAL n
1 127 ASP n
1 128 THR n
1 129 ILE n
1 130 SER n
1 131 VAL n
1 132 ASN n
1 133 GLY n
1 134 SER n
1 135 VAL n
1 136 GLN n
1 137 LEU n
1 138 SER n
1 139 TYR n
1 140 ILE n
1 141 SER n
1 142 PHE n
1 143 GLN n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene LGALS9
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details
'Galectin-9-specific mRNA from human SW480 colon adenocarcinoma cells was used for cloning of full-length cDNA.'
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pET-12a
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code LEG9_HUMAN
_struct_ref.pdbx_db_accession O00182
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;SQAPYLSPAVPFSGTIQGGLQDGLQITVNGTVLSSSGTRFAVNFQTGFSGNDIAFHFNPRFEDGGYVVCNTRQNGSWGPE
ERKTHMPFQKGMPFDLCFLVQSSDFKVMVNGILFVQYFHRVPFHRVDTISVNGSVQLSYISFQ
;
_struct_ref.pdbx_align_begin 6
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3LSE
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 143
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession O00182
_struct_ref_seq.db_align_beg 6
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 148
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 6
_struct_ref_seq.pdbx_auth_seq_align_end 148
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.entry_id 3LSE
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.92
_exptl_crystal.density_percent_sol 35.97
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details '30 % PEG 2000, 0.1 M Hepes (pH 7.0), VAPOR DIFFUSION, HANGING DROP, temperature 298K'
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 210r'
_diffrn_detector.pdbx_collection_date ?
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'Si 111 CHANNEL'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE BM16'
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline BM16
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 3LSE
_reflns.observed_criterion_sigma_I 2
_reflns.observed_criterion_sigma_F 1
_reflns.d_resolution_low 58.03
_reflns.d_resolution_high 2.69
_reflns.number_obs 3930
_reflns.number_all ?
_reflns.percent_possible_obs 96.7
_reflns.pdbx_Rmerge_I_obs 0.072
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 21.1
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 9.4
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 2.69
_reflns_shell.d_res_low 2.75
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.388
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 5.1
_reflns_shell.pdbx_redundancy 9.5
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 3LSE
_refine.ls_number_reflns_obs 3588
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 58.03
_refine.ls_d_res_high 2.69
_refine.ls_percent_reflns_obs 95.62
_refine.ls_R_factor_obs 0.22918
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.22338
_refine.ls_R_factor_R_free 0.35202
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.5
_refine.ls_number_reflns_R_free 169
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.929
_refine.correlation_coeff_Fo_to_Fc_free 0.834
_refine.B_iso_mean 46.253
_refine.aniso_B[1][1] 0.06
_refine.aniso_B[2][2] 0.06
_refine.aniso_B[3][3] -0.11
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model 'PDB ENTRY 1A3K'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free 0.551
_refine.overall_SU_ML 0.487
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 54.215
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1119
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 23
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 1142
_refine_hist.d_res_high 2.69
_refine_hist.d_res_low 58.03
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.016 0.022 ? 1172 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.938 1.944 ? 1592 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 10.320 5.000 ? 142 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 32.143 23.684 ? 57 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 20.678 15.000 ? 169 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg 14.762 15.000 ? 6 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.146 0.200 ? 174 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.013 0.021 ? 909 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 0.578 1.500 ? 707 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 1.028 2.000 ? 1142 'X-RAY DIFFRACTION' ?
r_scbond_it 1.313 3.000 ? 465 'X-RAY DIFFRACTION' ?
r_scangle_it 2.148 4.500 ? 450 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.694
_refine_ls_shell.d_res_low 2.764
_refine_ls_shell.number_reflns_R_work 207
_refine_ls_shell.R_factor_R_work 0.374
_refine_ls_shell.percent_reflns_obs 83.92
_refine_ls_shell.R_factor_R_free 0.926
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 7
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_obs ?
#
_struct.entry_id 3LSE
_struct.title 'N-Domain of human adhesion/growth-regulatory galectin-9 in complex with lactose'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3LSE
_struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN'
_struct_keywords.text
'MAINLY BETA, Alternative splicing, Cytoplasm, Lectin, Polymorphism, Secreted, SUGAR BINDING PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
_struct_conn.id covale1
_struct_conn.conn_type_id covale
_struct_conn.pdbx_leaving_atom_flag both
_struct_conn.pdbx_PDB_id ?
_struct_conn.ptnr1_label_asym_id B
_struct_conn.ptnr1_label_comp_id BGC
_struct_conn.ptnr1_label_seq_id .
_struct_conn.ptnr1_label_atom_id O4
_struct_conn.pdbx_ptnr1_label_alt_id ?
_struct_conn.pdbx_ptnr1_PDB_ins_code ?
_struct_conn.pdbx_ptnr1_standard_comp_id ?
_struct_conn.ptnr1_symmetry 1_555
_struct_conn.ptnr2_label_asym_id B
_struct_conn.ptnr2_label_comp_id GAL
_struct_conn.ptnr2_label_seq_id .
_struct_conn.ptnr2_label_atom_id C1
_struct_conn.pdbx_ptnr2_label_alt_id ?
_struct_conn.pdbx_ptnr2_PDB_ins_code ?
_struct_conn.ptnr1_auth_asym_id B
_struct_conn.ptnr1_auth_comp_id BGC
_struct_conn.ptnr1_auth_seq_id 1
_struct_conn.ptnr2_auth_asym_id B
_struct_conn.ptnr2_auth_comp_id GAL
_struct_conn.ptnr2_auth_seq_id 2
_struct_conn.ptnr2_symmetry 1_555
_struct_conn.pdbx_ptnr3_label_atom_id ?
_struct_conn.pdbx_ptnr3_label_seq_id ?
_struct_conn.pdbx_ptnr3_label_comp_id ?
_struct_conn.pdbx_ptnr3_label_asym_id ?
_struct_conn.pdbx_ptnr3_label_alt_id ?
_struct_conn.pdbx_ptnr3_PDB_ins_code ?
_struct_conn.details ?
_struct_conn.pdbx_dist_value 1.435
_struct_conn.pdbx_value_order sing
_struct_conn.pdbx_role ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 6 ?
B ? 6 ?
C ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
A 4 5 ? anti-parallel
A 5 6 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
B 5 6 ? anti-parallel
C 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 TYR A 5 ? LEU A 6 ? TYR A 10 LEU A 11
A 2 VAL A 135 ? PHE A 142 ? VAL A 140 PHE A 147
A 3 GLN A 25 ? VAL A 32 ? GLN A 30 VAL A 37
A 4 PRO A 93 ? VAL A 100 ? PRO A 98 VAL A 105
A 5 ASP A 104 ? VAL A 109 ? ASP A 109 VAL A 114
A 6 LEU A 113 ? PHE A 118 ? LEU A 118 PHE A 123
B 1 PHE A 12 ? THR A 15 ? PHE A 17 THR A 20
B 2 THR A 128 ? GLY A 133 ? THR A 133 GLY A 138
B 3 PHE A 40 ? GLN A 45 ? PHE A 45 GLN A 50
B 4 ILE A 53 ? ARG A 60 ? ILE A 58 ARG A 65
B 5 TYR A 66 ? ASN A 70 ? TYR A 71 ASN A 75
B 6 GLU A 81 ? LYS A 83 ? GLU A 86 LYS A 88
C 1 ARG A 72 ? GLN A 73 ? ARG A 77 GLN A 78
C 2 SER A 76 ? TRP A 77 ? SER A 81 TRP A 82
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N TYR A 5 ? N TYR A 10 O ILE A 140 ? O ILE A 145
A 2 3 O TYR A 139 ? O TYR A 144 N ASN A 29 ? N ASN A 34
A 3 4 N VAL A 28 ? N VAL A 33 O LEU A 96 ? O LEU A 101
A 4 5 N CYS A 97 ? N CYS A 102 O MET A 108 ? O MET A 113
A 5 6 N PHE A 105 ? N PHE A 110 O TYR A 117 ? O TYR A 122
B 1 2 N PHE A 12 ? N PHE A 17 O VAL A 131 ? O VAL A 136
B 2 3 O SER A 130 ? O SER A 135 N ASN A 43 ? N ASN A 48
B 3 4 N PHE A 44 ? N PHE A 49 O PHE A 55 ? O PHE A 60
B 4 5 N ASN A 58 ? N ASN A 63 O VAL A 68 ? O VAL A 73
B 5 6 N CYS A 69 ? N CYS A 74 O GLU A 81 ? O GLU A 86
C 1 2 N GLN A 73 ? N GLN A 78 O SER A 76 ? O SER A 81
#
_database_PDB_matrix.entry_id 3LSE
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 3LSE
_atom_sites.fract_transf_matrix[1][1] 0.030877
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.030877
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.004306
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_database_PDB_caveat.text 'BGC B 1 HAS WRONG CHIRALITY AT ATOM C1'
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 SER 1 6 6 SER ALA A . n
A 1 2 GLN 2 7 7 GLN GLN A . n
A 1 3 ALA 3 8 8 ALA ALA A . n
A 1 4 PRO 4 9 9 PRO PRO A . n
A 1 5 TYR 5 10 10 TYR TYR A . n
A 1 6 LEU 6 11 11 LEU LEU A . n
A 1 7 SER 7 12 12 SER SER A . n
A 1 8 PRO 8 13 13 PRO PRO A . n
A 1 9 ALA 9 14 14 ALA ALA A . n
A 1 10 VAL 10 15 15 VAL VAL A . n
A 1 11 PRO 11 16 16 PRO PRO A . n
A 1 12 PHE 12 17 17 PHE PHE A . n
A 1 13 SER 13 18 18 SER SER A . n
A 1 14 GLY 14 19 19 GLY GLY A . n
A 1 15 THR 15 20 20 THR THR A . n
A 1 16 ILE 16 21 21 ILE ILE A . n
A 1 17 GLN 17 22 22 GLN GLN A . n
A 1 18 GLY 18 23 23 GLY GLY A . n
A 1 19 GLY 19 24 24 GLY GLY A . n
A 1 20 LEU 20 25 25 LEU LEU A . n
A 1 21 GLN 21 26 26 GLN GLN A . n
A 1 22 ASP 22 27 27 ASP ASP A . n
A 1 23 GLY 23 28 28 GLY GLY A . n
A 1 24 LEU 24 29 29 LEU LEU A . n
A 1 25 GLN 25 30 30 GLN GLN A . n
A 1 26 ILE 26 31 31 ILE ILE A . n
A 1 27 THR 27 32 32 THR THR A . n
A 1 28 VAL 28 33 33 VAL VAL A . n
A 1 29 ASN 29 34 34 ASN ASN A . n
A 1 30 GLY 30 35 35 GLY GLY A . n
A 1 31 THR 31 36 36 THR THR A . n
A 1 32 VAL 32 37 37 VAL VAL A . n
A 1 33 LEU 33 38 38 LEU LEU A . n
A 1 34 SER 34 39 39 SER SER A . n
A 1 35 SER 35 40 40 SER SER A . n
A 1 36 SER 36 41 41 SER SER A . n
A 1 37 GLY 37 42 42 GLY GLY A . n
A 1 38 THR 38 43 43 THR THR A . n
A 1 39 ARG 39 44 44 ARG ARG A . n
A 1 40 PHE 40 45 45 PHE PHE A . n
A 1 41 ALA 41 46 46 ALA ALA A . n
A 1 42 VAL 42 47 47 VAL VAL A . n
A 1 43 ASN 43 48 48 ASN ASN A . n
A 1 44 PHE 44 49 49 PHE PHE A . n
A 1 45 GLN 45 50 50 GLN GLN A . n
A 1 46 THR 46 51 51 THR THR A . n
A 1 47 GLY 47 52 52 GLY GLY A . n
A 1 48 PHE 48 53 53 PHE PHE A . n
A 1 49 SER 49 54 54 SER SER A . n
A 1 50 GLY 50 55 55 GLY GLY A . n
A 1 51 ASN 51 56 56 ASN ASN A . n
A 1 52 ASP 52 57 57 ASP ASP A . n
A 1 53 ILE 53 58 58 ILE ILE A . n
A 1 54 ALA 54 59 59 ALA ALA A . n
A 1 55 PHE 55 60 60 PHE PHE A . n
A 1 56 HIS 56 61 61 HIS HIS A . n
A 1 57 PHE 57 62 62 PHE PHE A . n
A 1 58 ASN 58 63 63 ASN ASN A . n
A 1 59 PRO 59 64 64 PRO PRO A . n
A 1 60 ARG 60 65 65 ARG ARG A . n
A 1 61 PHE 61 66 66 PHE PHE A . n
A 1 62 GLU 62 67 67 GLU GLU A . n
A 1 63 ASP 63 68 68 ASP ASP A . n
A 1 64 GLY 64 69 69 GLY GLY A . n
A 1 65 GLY 65 70 70 GLY GLY A . n
A 1 66 TYR 66 71 71 TYR TYR A . n
A 1 67 VAL 67 72 72 VAL VAL A . n
A 1 68 VAL 68 73 73 VAL VAL A . n
A 1 69 CYS 69 74 74 CYS CYS A . n
A 1 70 ASN 70 75 75 ASN ASN A . n
A 1 71 THR 71 76 76 THR THR A . n
A 1 72 ARG 72 77 77 ARG ARG A . n
A 1 73 GLN 73 78 78 GLN GLN A . n
A 1 74 ASN 74 79 79 ASN ASN A . n
A 1 75 GLY 75 80 80 GLY GLY A . n
A 1 76 SER 76 81 81 SER SER A . n
A 1 77 TRP 77 82 82 TRP TRP A . n
A 1 78 GLY 78 83 83 GLY GLY A . n
A 1 79 PRO 79 84 84 PRO PRO A . n
A 1 80 GLU 80 85 85 GLU GLU A . n
A 1 81 GLU 81 86 86 GLU GLU A . n
A 1 82 ARG 82 87 87 ARG ARG A . n
A 1 83 LYS 83 88 88 LYS LYS A . n
A 1 84 THR 84 89 89 THR THR A . n
A 1 85 HIS 85 90 90 HIS HIS A . n
A 1 86 MET 86 91 91 MET MET A . n
A 1 87 PRO 87 92 92 PRO PRO A . n
A 1 88 PHE 88 93 93 PHE PHE A . n
A 1 89 GLN 89 94 94 GLN GLN A . n
A 1 90 LYS 90 95 95 LYS LYS A . n
A 1 91 GLY 91 96 96 GLY GLY A . n
A 1 92 MET 92 97 97 MET MET A . n
A 1 93 PRO 93 98 98 PRO PRO A . n
A 1 94 PHE 94 99 99 PHE PHE A . n
A 1 95 ASP 95 100 100 ASP ASP A . n
A 1 96 LEU 96 101 101 LEU LEU A . n
A 1 97 CYS 97 102 102 CYS CYS A . n
A 1 98 PHE 98 103 103 PHE PHE A . n
A 1 99 LEU 99 104 104 LEU LEU A . n
A 1 100 VAL 100 105 105 VAL VAL A . n
A 1 101 GLN 101 106 106 GLN GLN A . n
A 1 102 SER 102 107 107 SER SER A . n
A 1 103 SER 103 108 108 SER SER A . n
A 1 104 ASP 104 109 109 ASP ASP A . n
A 1 105 PHE 105 110 110 PHE PHE A . n
A 1 106 LYS 106 111 111 LYS LYS A . n
A 1 107 VAL 107 112 112 VAL VAL A . n
A 1 108 MET 108 113 113 MET MET A . n
A 1 109 VAL 109 114 114 VAL VAL A . n
A 1 110 ASN 110 115 115 ASN ASN A . n
A 1 111 GLY 111 116 116 GLY GLY A . n
A 1 112 ILE 112 117 117 ILE ILE A . n
A 1 113 LEU 113 118 118 LEU LEU A . n
A 1 114 PHE 114 119 119 PHE PHE A . n
A 1 115 VAL 115 120 120 VAL VAL A . n
A 1 116 GLN 116 121 121 GLN GLN A . n
A 1 117 TYR 117 122 122 TYR TYR A . n
A 1 118 PHE 118 123 123 PHE PHE A . n
A 1 119 HIS 119 124 124 HIS HIS A . n
A 1 120 ARG 120 125 125 ARG ARG A . n
A 1 121 VAL 121 126 126 VAL VAL A . n
A 1 122 PRO 122 127 127 PRO PRO A . n
A 1 123 PHE 123 128 128 PHE PHE A . n
A 1 124 HIS 124 129 129 HIS HIS A . n
A 1 125 ARG 125 130 130 ARG ARG A . n
A 1 126 VAL 126 131 131 VAL VAL A . n
A 1 127 ASP 127 132 132 ASP ASP A . n
A 1 128 THR 128 133 133 THR THR A . n
A 1 129 ILE 129 134 134 ILE ILE A . n
A 1 130 SER 130 135 135 SER SER A . n
A 1 131 VAL 131 136 136 VAL VAL A . n
A 1 132 ASN 132 137 137 ASN ASN A . n
A 1 133 GLY 133 138 138 GLY GLY A . n
A 1 134 SER 134 139 139 SER SER A . n
A 1 135 VAL 135 140 140 VAL VAL A . n
A 1 136 GLN 136 141 141 GLN GLN A . n
A 1 137 LEU 137 142 142 LEU LEU A . n
A 1 138 SER 138 143 143 SER SER A . n
A 1 139 TYR 139 144 144 TYR TYR A . n
A 1 140 ILE 140 145 145 ILE ILE A . n
A 1 141 SER 141 146 146 SER SER A . n
A 1 142 PHE 142 147 147 PHE PHE A . n
A 1 143 GLN 143 148 148 GLN GLN A . n
#
_pdbx_molecule_features.prd_id PRD_900004
_pdbx_molecule_features.name beta-lactose
_pdbx_molecule_features.type Oligosaccharide
_pdbx_molecule_features.class Nutrient
_pdbx_molecule_features.details oligosaccharide
#
_pdbx_molecule.instance_id 1
_pdbx_molecule.prd_id PRD_900004
_pdbx_molecule.asym_id B
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_defined_assembly ? monomeric 1
2 software_defined_assembly PISA dimeric 2
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B
2 1,2 A,B
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
2 'ABSA (A^2)' 1900 ?
2 MORE -1 ?
2 'SSA (A^2)' 12890 ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2010-05-05
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 2 0 2020-07-29
4 'Structure model' 2 1 2023-09-06
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' Advisory
3 3 'Structure model' 'Atomic model'
4 3 'Structure model' 'Data collection'
5 3 'Structure model' 'Derived calculations'
6 3 'Structure model' 'Non-polymer description'
7 3 'Structure model' 'Structure summary'
8 4 'Structure model' Advisory
9 4 'Structure model' 'Data collection'
10 4 'Structure model' 'Database references'
11 4 'Structure model' 'Refinement description'
12 4 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' atom_site
2 3 'Structure model' chem_comp
3 3 'Structure model' database_PDB_caveat
4 3 'Structure model' entity
5 3 'Structure model' entity_name_com
6 3 'Structure model' pdbx_branch_scheme
7 3 'Structure model' pdbx_chem_comp_identifier
8 3 'Structure model' pdbx_entity_branch
9 3 'Structure model' pdbx_entity_branch_descriptor
10 3 'Structure model' pdbx_entity_branch_link
11 3 'Structure model' pdbx_entity_branch_list
12 3 'Structure model' pdbx_entity_nonpoly
13 3 'Structure model' pdbx_molecule_features
14 3 'Structure model' pdbx_nonpoly_scheme
15 3 'Structure model' pdbx_unobs_or_zero_occ_atoms
16 3 'Structure model' pdbx_validate_chiral
17 3 'Structure model' struct_conn
18 3 'Structure model' struct_site
19 3 'Structure model' struct_site_gen
20 4 'Structure model' chem_comp
21 4 'Structure model' chem_comp_atom
22 4 'Structure model' chem_comp_bond
23 4 'Structure model' database_2
24 4 'Structure model' pdbx_initial_refinement_model
25 4 'Structure model' pdbx_unobs_or_zero_occ_atoms
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_atom_site.B_iso_or_equiv'
2 3 'Structure model' '_atom_site.Cartn_x'
3 3 'Structure model' '_atom_site.Cartn_y'
4 3 'Structure model' '_atom_site.Cartn_z'
5 3 'Structure model' '_atom_site.auth_asym_id'
6 3 'Structure model' '_atom_site.auth_atom_id'
7 3 'Structure model' '_atom_site.auth_comp_id'
8 3 'Structure model' '_atom_site.auth_seq_id'
9 3 'Structure model' '_atom_site.label_atom_id'
10 3 'Structure model' '_atom_site.label_comp_id'
11 3 'Structure model' '_chem_comp.formula'
12 3 'Structure model' '_chem_comp.formula_weight'
13 3 'Structure model' '_chem_comp.id'
14 3 'Structure model' '_chem_comp.mon_nstd_flag'
15 3 'Structure model' '_chem_comp.name'
16 3 'Structure model' '_chem_comp.type'
17 3 'Structure model' '_entity.formula_weight'
18 3 'Structure model' '_entity.pdbx_description'
19 3 'Structure model' '_entity.type'
20 3 'Structure model' '_pdbx_validate_chiral.auth_asym_id'
21 3 'Structure model' '_pdbx_validate_chiral.auth_atom_id'
22 3 'Structure model' '_pdbx_validate_chiral.auth_comp_id'
23 4 'Structure model' '_chem_comp.pdbx_synonyms'
24 4 'Structure model' '_database_2.pdbx_DOI'
25 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls.id 1
_pdbx_refine_tls.details ?
_pdbx_refine_tls.method refined
_pdbx_refine_tls.origin_x -5.0010
_pdbx_refine_tls.origin_y -13.1790
_pdbx_refine_tls.origin_z -15.0100
_pdbx_refine_tls.T[1][1] 0.5176
_pdbx_refine_tls.T[2][2] 0.0315
_pdbx_refine_tls.T[3][3] 0.0047
_pdbx_refine_tls.T[1][2] 0.0159
_pdbx_refine_tls.T[1][3] -0.0208
_pdbx_refine_tls.T[2][3] -0.0099
_pdbx_refine_tls.L[1][1] 4.5331
_pdbx_refine_tls.L[2][2] 9.6489
_pdbx_refine_tls.L[3][3] 10.8590
_pdbx_refine_tls.L[1][2] 1.9361
_pdbx_refine_tls.L[1][3] 0.3151
_pdbx_refine_tls.L[2][3] -0.7217
_pdbx_refine_tls.S[1][1] 0.0350
_pdbx_refine_tls.S[1][2] 0.2022
_pdbx_refine_tls.S[1][3] -0.0039
_pdbx_refine_tls.S[2][1] -0.5395
_pdbx_refine_tls.S[2][2] -0.1491
_pdbx_refine_tls.S[2][3] 0.1328
_pdbx_refine_tls.S[3][1] 0.8761
_pdbx_refine_tls.S[3][2] -0.3526
_pdbx_refine_tls.S[3][3] 0.1141
#
_pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls_group.id 1
_pdbx_refine_tls_group.refine_tls_id 1
_pdbx_refine_tls_group.beg_auth_asym_id A
_pdbx_refine_tls_group.beg_auth_seq_id -10
_pdbx_refine_tls_group.beg_label_asym_id ?
_pdbx_refine_tls_group.beg_label_seq_id ?
_pdbx_refine_tls_group.end_auth_asym_id A
_pdbx_refine_tls_group.end_auth_seq_id 9999
_pdbx_refine_tls_group.end_label_asym_id ?
_pdbx_refine_tls_group.end_label_seq_id ?
_pdbx_refine_tls_group.selection ?
_pdbx_refine_tls_group.selection_details ?
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
ADSC 'data collection' Quantum ? 1
MOLREP phasing . ? 2
REFMAC refinement 5.5.0072 ? 3
MOSFLM 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 C
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 VAL
_pdbx_validate_rmsd_angle.auth_seq_id_1 15
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 N
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 PRO
_pdbx_validate_rmsd_angle.auth_seq_id_2 16
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 CA
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 PRO
_pdbx_validate_rmsd_angle.auth_seq_id_3 16
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 107.84
_pdbx_validate_rmsd_angle.angle_target_value 119.30
_pdbx_validate_rmsd_angle.angle_deviation -11.46
_pdbx_validate_rmsd_angle.angle_standard_deviation 1.50
_pdbx_validate_rmsd_angle.linker_flag Y
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 PHE A 66 ? ? -105.50 65.48
2 1 ASP A 68 ? ? 56.20 19.13
3 1 ASN A 79 ? ? 37.46 53.73
4 1 HIS A 90 ? ? -40.83 150.07
5 1 SER A 139 ? ? -100.17 67.19
#
_pdbx_validate_peptide_omega.id 1
_pdbx_validate_peptide_omega.PDB_model_num 1
_pdbx_validate_peptide_omega.auth_comp_id_1 VAL
_pdbx_validate_peptide_omega.auth_asym_id_1 A
_pdbx_validate_peptide_omega.auth_seq_id_1 15
_pdbx_validate_peptide_omega.PDB_ins_code_1 ?
_pdbx_validate_peptide_omega.label_alt_id_1 ?
_pdbx_validate_peptide_omega.auth_comp_id_2 PRO
_pdbx_validate_peptide_omega.auth_asym_id_2 A
_pdbx_validate_peptide_omega.auth_seq_id_2 16
_pdbx_validate_peptide_omega.PDB_ins_code_2 ?
_pdbx_validate_peptide_omega.label_alt_id_2 ?
_pdbx_validate_peptide_omega.omega 116.52
#
_pdbx_validate_chiral.id 1
_pdbx_validate_chiral.PDB_model_num 1
_pdbx_validate_chiral.auth_atom_id C1
_pdbx_validate_chiral.label_alt_id ?
_pdbx_validate_chiral.auth_asym_id B
_pdbx_validate_chiral.auth_comp_id BGC
_pdbx_validate_chiral.auth_seq_id 1
_pdbx_validate_chiral.PDB_ins_code ?
_pdbx_validate_chiral.details 'WRONG HAND'
_pdbx_validate_chiral.omega .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A SER 6 ? OG ? A SER 1 OG
2 1 Y 0 A ASN 79 ? CG ? A ASN 74 CG
3 1 Y 0 A ASN 79 ? OD1 ? A ASN 74 OD1
4 1 Y 0 A ASN 79 ? ND2 ? A ASN 74 ND2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
BGC C2 C N R 74
BGC C3 C N S 75
BGC C4 C N S 76
BGC C5 C N R 77
BGC C6 C N N 78
BGC C1 C N R 79
BGC O1 O N N 80
BGC O2 O N N 81
BGC O3 O N N 82
BGC O4 O N N 83
BGC O5 O N N 84
BGC O6 O N N 85
BGC H2 H N N 86
BGC H3 H N N 87
BGC H4 H N N 88
BGC H5 H N N 89
BGC H61 H N N 90
BGC H62 H N N 91
BGC H1 H N N 92
BGC HO1 H N N 93
BGC HO2 H N N 94
BGC HO3 H N N 95
BGC HO4 H N N 96
BGC HO6 H N N 97
CYS N N N N 98
CYS CA C N R 99
CYS C C N N 100
CYS O O N N 101
CYS CB C N N 102
CYS SG S N N 103
CYS OXT O N N 104
CYS H H N N 105
CYS H2 H N N 106
CYS HA H N N 107
CYS HB2 H N N 108
CYS HB3 H N N 109
CYS HG H N N 110
CYS HXT H N N 111
GAL C1 C N R 112
GAL C2 C N R 113
GAL C3 C N S 114
GAL C4 C N R 115
GAL C5 C N R 116
GAL C6 C N N 117
GAL O1 O N N 118
GAL O2 O N N 119
GAL O3 O N N 120
GAL O4 O N N 121
GAL O5 O N N 122
GAL O6 O N N 123
GAL H1 H N N 124
GAL H2 H N N 125
GAL H3 H N N 126
GAL H4 H N N 127
GAL H5 H N N 128
GAL H61 H N N 129
GAL H62 H N N 130
GAL HO1 H N N 131
GAL HO2 H N N 132
GAL HO3 H N N 133
GAL HO4 H N N 134
GAL HO6 H N N 135
GLN N N N N 136
GLN CA C N S 137
GLN C C N N 138
GLN O O N N 139
GLN CB C N N 140
GLN CG C N N 141
GLN CD C N N 142
GLN OE1 O N N 143
GLN NE2 N N N 144
GLN OXT O N N 145
GLN H H N N 146
GLN H2 H N N 147
GLN HA H N N 148
GLN HB2 H N N 149
GLN HB3 H N N 150
GLN HG2 H N N 151
GLN HG3 H N N 152
GLN HE21 H N N 153
GLN HE22 H N N 154
GLN HXT H N N 155
GLU N N N N 156
GLU CA C N S 157
GLU C C N N 158
GLU O O N N 159
GLU CB C N N 160
GLU CG C N N 161
GLU CD C N N 162
GLU OE1 O N N 163
GLU OE2 O N N 164
GLU OXT O N N 165
GLU H H N N 166
GLU H2 H N N 167
GLU HA H N N 168
GLU HB2 H N N 169
GLU HB3 H N N 170
GLU HG2 H N N 171
GLU HG3 H N N 172
GLU HE2 H N N 173
GLU HXT H N N 174
GLY N N N N 175
GLY CA C N N 176
GLY C C N N 177
GLY O O N N 178
GLY OXT O N N 179
GLY H H N N 180
GLY H2 H N N 181
GLY HA2 H N N 182
GLY HA3 H N N 183
GLY HXT H N N 184
HIS N N N N 185
HIS CA C N S 186
HIS C C N N 187
HIS O O N N 188
HIS CB C N N 189
HIS CG C Y N 190
HIS ND1 N Y N 191
HIS CD2 C Y N 192
HIS CE1 C Y N 193
HIS NE2 N Y N 194
HIS OXT O N N 195
HIS H H N N 196
HIS H2 H N N 197
HIS HA H N N 198
HIS HB2 H N N 199
HIS HB3 H N N 200
HIS HD1 H N N 201
HIS HD2 H N N 202
HIS HE1 H N N 203
HIS HE2 H N N 204
HIS HXT H N N 205
ILE N N N N 206
ILE CA C N S 207
ILE C C N N 208
ILE O O N N 209
ILE CB C N S 210
ILE CG1 C N N 211
ILE CG2 C N N 212
ILE CD1 C N N 213
ILE OXT O N N 214
ILE H H N N 215
ILE H2 H N N 216
ILE HA H N N 217
ILE HB H N N 218
ILE HG12 H N N 219
ILE HG13 H N N 220
ILE HG21 H N N 221
ILE HG22 H N N 222
ILE HG23 H N N 223
ILE HD11 H N N 224
ILE HD12 H N N 225
ILE HD13 H N N 226
ILE HXT H N N 227
LEU N N N N 228
LEU CA C N S 229
LEU C C N N 230
LEU O O N N 231
LEU CB C N N 232
LEU CG C N N 233
LEU CD1 C N N 234
LEU CD2 C N N 235
LEU OXT O N N 236
LEU H H N N 237
LEU H2 H N N 238
LEU HA H N N 239
LEU HB2 H N N 240
LEU HB3 H N N 241
LEU HG H N N 242
LEU HD11 H N N 243
LEU HD12 H N N 244
LEU HD13 H N N 245
LEU HD21 H N N 246
LEU HD22 H N N 247
LEU HD23 H N N 248
LEU HXT H N N 249
LYS N N N N 250
LYS CA C N S 251
LYS C C N N 252
LYS O O N N 253
LYS CB C N N 254
LYS CG C N N 255
LYS CD C N N 256
LYS CE C N N 257
LYS NZ N N N 258
LYS OXT O N N 259
LYS H H N N 260
LYS H2 H N N 261
LYS HA H N N 262
LYS HB2 H N N 263
LYS HB3 H N N 264
LYS HG2 H N N 265
LYS HG3 H N N 266
LYS HD2 H N N 267
LYS HD3 H N N 268
LYS HE2 H N N 269
LYS HE3 H N N 270
LYS HZ1 H N N 271
LYS HZ2 H N N 272
LYS HZ3 H N N 273
LYS HXT H N N 274
MET N N N N 275
MET CA C N S 276
MET C C N N 277
MET O O N N 278
MET CB C N N 279
MET CG C N N 280
MET SD S N N 281
MET CE C N N 282
MET OXT O N N 283
MET H H N N 284
MET H2 H N N 285
MET HA H N N 286
MET HB2 H N N 287
MET HB3 H N N 288
MET HG2 H N N 289
MET HG3 H N N 290
MET HE1 H N N 291
MET HE2 H N N 292
MET HE3 H N N 293
MET HXT H N N 294
PHE N N N N 295
PHE CA C N S 296
PHE C C N N 297
PHE O O N N 298
PHE CB C N N 299
PHE CG C Y N 300
PHE CD1 C Y N 301
PHE CD2 C Y N 302
PHE CE1 C Y N 303
PHE CE2 C Y N 304
PHE CZ C Y N 305
PHE OXT O N N 306
PHE H H N N 307
PHE H2 H N N 308
PHE HA H N N 309
PHE HB2 H N N 310
PHE HB3 H N N 311
PHE HD1 H N N 312
PHE HD2 H N N 313
PHE HE1 H N N 314
PHE HE2 H N N 315
PHE HZ H N N 316
PHE HXT H N N 317
PRO N N N N 318
PRO CA C N S 319
PRO C C N N 320
PRO O O N N 321
PRO CB C N N 322
PRO CG C N N 323
PRO CD C N N 324
PRO OXT O N N 325
PRO H H N N 326
PRO HA H N N 327
PRO HB2 H N N 328
PRO HB3 H N N 329
PRO HG2 H N N 330
PRO HG3 H N N 331
PRO HD2 H N N 332
PRO HD3 H N N 333
PRO HXT H N N 334
SER N N N N 335
SER CA C N S 336
SER C C N N 337
SER O O N N 338
SER CB C N N 339
SER OG O N N 340
SER OXT O N N 341
SER H H N N 342
SER H2 H N N 343
SER HA H N N 344
SER HB2 H N N 345
SER HB3 H N N 346
SER HG H N N 347
SER HXT H N N 348
THR N N N N 349
THR CA C N S 350
THR C C N N 351
THR O O N N 352
THR CB C N R 353
THR OG1 O N N 354
THR CG2 C N N 355
THR OXT O N N 356
THR H H N N 357
THR H2 H N N 358
THR HA H N N 359
THR HB H N N 360
THR HG1 H N N 361
THR HG21 H N N 362
THR HG22 H N N 363
THR HG23 H N N 364
THR HXT H N N 365
TRP N N N N 366
TRP CA C N S 367
TRP C C N N 368
TRP O O N N 369
TRP CB C N N 370
TRP CG C Y N 371
TRP CD1 C Y N 372
TRP CD2 C Y N 373
TRP NE1 N Y N 374
TRP CE2 C Y N 375
TRP CE3 C Y N 376
TRP CZ2 C Y N 377
TRP CZ3 C Y N 378
TRP CH2 C Y N 379
TRP OXT O N N 380
TRP H H N N 381
TRP H2 H N N 382
TRP HA H N N 383
TRP HB2 H N N 384
TRP HB3 H N N 385
TRP HD1 H N N 386
TRP HE1 H N N 387
TRP HE3 H N N 388
TRP HZ2 H N N 389
TRP HZ3 H N N 390
TRP HH2 H N N 391
TRP HXT H N N 392
TYR N N N N 393
TYR CA C N S 394
TYR C C N N 395
TYR O O N N 396
TYR CB C N N 397
TYR CG C Y N 398
TYR CD1 C Y N 399
TYR CD2 C Y N 400
TYR CE1 C Y N 401
TYR CE2 C Y N 402
TYR CZ C Y N 403
TYR OH O N N 404
TYR OXT O N N 405
TYR H H N N 406
TYR H2 H N N 407
TYR HA H N N 408
TYR HB2 H N N 409
TYR HB3 H N N 410
TYR HD1 H N N 411
TYR HD2 H N N 412
TYR HE1 H N N 413
TYR HE2 H N N 414
TYR HH H N N 415
TYR HXT H N N 416
VAL N N N N 417
VAL CA C N S 418
VAL C C N N 419
VAL O O N N 420
VAL CB C N N 421
VAL CG1 C N N 422
VAL CG2 C N N 423
VAL OXT O N N 424
VAL H H N N 425
VAL H2 H N N 426
VAL HA H N N 427
VAL HB H N N 428
VAL HG11 H N N 429
VAL HG12 H N N 430
VAL HG13 H N N 431
VAL HG21 H N N 432
VAL HG22 H N N 433
VAL HG23 H N N 434
VAL HXT H N N 435
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
BGC C2 C3 sing N N 70
BGC C2 C1 sing N N 71
BGC C2 O2 sing N N 72
BGC C2 H2 sing N N 73
BGC C3 C4 sing N N 74
BGC C3 O3 sing N N 75
BGC C3 H3 sing N N 76
BGC C4 C5 sing N N 77
BGC C4 O4 sing N N 78
BGC C4 H4 sing N N 79
BGC C5 C6 sing N N 80
BGC C5 O5 sing N N 81
BGC C5 H5 sing N N 82
BGC C6 O6 sing N N 83
BGC C6 H61 sing N N 84
BGC C6 H62 sing N N 85
BGC C1 O1 sing N N 86
BGC C1 O5 sing N N 87
BGC C1 H1 sing N N 88
BGC O1 HO1 sing N N 89
BGC O2 HO2 sing N N 90
BGC O3 HO3 sing N N 91
BGC O4 HO4 sing N N 92
BGC O6 HO6 sing N N 93
CYS N CA sing N N 94
CYS N H sing N N 95
CYS N H2 sing N N 96
CYS CA C sing N N 97
CYS CA CB sing N N 98
CYS CA HA sing N N 99
CYS C O doub N N 100
CYS C OXT sing N N 101
CYS CB SG sing N N 102
CYS CB HB2 sing N N 103
CYS CB HB3 sing N N 104
CYS SG HG sing N N 105
CYS OXT HXT sing N N 106
GAL C1 C2 sing N N 107
GAL C1 O1 sing N N 108
GAL C1 O5 sing N N 109
GAL C1 H1 sing N N 110
GAL C2 C3 sing N N 111
GAL C2 O2 sing N N 112
GAL C2 H2 sing N N 113
GAL C3 C4 sing N N 114
GAL C3 O3 sing N N 115
GAL C3 H3 sing N N 116
GAL C4 C5 sing N N 117
GAL C4 O4 sing N N 118
GAL C4 H4 sing N N 119
GAL C5 C6 sing N N 120
GAL C5 O5 sing N N 121
GAL C5 H5 sing N N 122
GAL C6 O6 sing N N 123
GAL C6 H61 sing N N 124
GAL C6 H62 sing N N 125
GAL O1 HO1 sing N N 126
GAL O2 HO2 sing N N 127
GAL O3 HO3 sing N N 128
GAL O4 HO4 sing N N 129
GAL O6 HO6 sing N N 130
GLN N CA sing N N 131
GLN N H sing N N 132
GLN N H2 sing N N 133
GLN CA C sing N N 134
GLN CA CB sing N N 135
GLN CA HA sing N N 136
GLN C O doub N N 137
GLN C OXT sing N N 138
GLN CB CG sing N N 139
GLN CB HB2 sing N N 140
GLN CB HB3 sing N N 141
GLN CG CD sing N N 142
GLN CG HG2 sing N N 143
GLN CG HG3 sing N N 144
GLN CD OE1 doub N N 145
GLN CD NE2 sing N N 146
GLN NE2 HE21 sing N N 147
GLN NE2 HE22 sing N N 148
GLN OXT HXT sing N N 149
GLU N CA sing N N 150
GLU N H sing N N 151
GLU N H2 sing N N 152
GLU CA C sing N N 153
GLU CA CB sing N N 154
GLU CA HA sing N N 155
GLU C O doub N N 156
GLU C OXT sing N N 157
GLU CB CG sing N N 158
GLU CB HB2 sing N N 159
GLU CB HB3 sing N N 160
GLU CG CD sing N N 161
GLU CG HG2 sing N N 162
GLU CG HG3 sing N N 163
GLU CD OE1 doub N N 164
GLU CD OE2 sing N N 165
GLU OE2 HE2 sing N N 166
GLU OXT HXT sing N N 167
GLY N CA sing N N 168
GLY N H sing N N 169
GLY N H2 sing N N 170
GLY CA C sing N N 171
GLY CA HA2 sing N N 172
GLY CA HA3 sing N N 173
GLY C O doub N N 174
GLY C OXT sing N N 175
GLY OXT HXT sing N N 176
HIS N CA sing N N 177
HIS N H sing N N 178
HIS N H2 sing N N 179
HIS CA C sing N N 180
HIS CA CB sing N N 181
HIS CA HA sing N N 182
HIS C O doub N N 183
HIS C OXT sing N N 184
HIS CB CG sing N N 185
HIS CB HB2 sing N N 186
HIS CB HB3 sing N N 187
HIS CG ND1 sing Y N 188
HIS CG CD2 doub Y N 189
HIS ND1 CE1 doub Y N 190
HIS ND1 HD1 sing N N 191
HIS CD2 NE2 sing Y N 192
HIS CD2 HD2 sing N N 193
HIS CE1 NE2 sing Y N 194
HIS CE1 HE1 sing N N 195
HIS NE2 HE2 sing N N 196
HIS OXT HXT sing N N 197
ILE N CA sing N N 198
ILE N H sing N N 199
ILE N H2 sing N N 200
ILE CA C sing N N 201
ILE CA CB sing N N 202
ILE CA HA sing N N 203
ILE C O doub N N 204
ILE C OXT sing N N 205
ILE CB CG1 sing N N 206
ILE CB CG2 sing N N 207
ILE CB HB sing N N 208
ILE CG1 CD1 sing N N 209
ILE CG1 HG12 sing N N 210
ILE CG1 HG13 sing N N 211
ILE CG2 HG21 sing N N 212
ILE CG2 HG22 sing N N 213
ILE CG2 HG23 sing N N 214
ILE CD1 HD11 sing N N 215
ILE CD1 HD12 sing N N 216
ILE CD1 HD13 sing N N 217
ILE OXT HXT sing N N 218
LEU N CA sing N N 219
LEU N H sing N N 220
LEU N H2 sing N N 221
LEU CA C sing N N 222
LEU CA CB sing N N 223
LEU CA HA sing N N 224
LEU C O doub N N 225
LEU C OXT sing N N 226
LEU CB CG sing N N 227
LEU CB HB2 sing N N 228
LEU CB HB3 sing N N 229
LEU CG CD1 sing N N 230
LEU CG CD2 sing N N 231
LEU CG HG sing N N 232
LEU CD1 HD11 sing N N 233
LEU CD1 HD12 sing N N 234
LEU CD1 HD13 sing N N 235
LEU CD2 HD21 sing N N 236
LEU CD2 HD22 sing N N 237
LEU CD2 HD23 sing N N 238
LEU OXT HXT sing N N 239
LYS N CA sing N N 240
LYS N H sing N N 241
LYS N H2 sing N N 242
LYS CA C sing N N 243
LYS CA CB sing N N 244
LYS CA HA sing N N 245
LYS C O doub N N 246
LYS C OXT sing N N 247
LYS CB CG sing N N 248
LYS CB HB2 sing N N 249
LYS CB HB3 sing N N 250
LYS CG CD sing N N 251
LYS CG HG2 sing N N 252
LYS CG HG3 sing N N 253
LYS CD CE sing N N 254
LYS CD HD2 sing N N 255
LYS CD HD3 sing N N 256
LYS CE NZ sing N N 257
LYS CE HE2 sing N N 258
LYS CE HE3 sing N N 259
LYS NZ HZ1 sing N N 260
LYS NZ HZ2 sing N N 261
LYS NZ HZ3 sing N N 262
LYS OXT HXT sing N N 263
MET N CA sing N N 264
MET N H sing N N 265
MET N H2 sing N N 266
MET CA C sing N N 267
MET CA CB sing N N 268
MET CA HA sing N N 269
MET C O doub N N 270
MET C OXT sing N N 271
MET CB CG sing N N 272
MET CB HB2 sing N N 273
MET CB HB3 sing N N 274
MET CG SD sing N N 275
MET CG HG2 sing N N 276
MET CG HG3 sing N N 277
MET SD CE sing N N 278
MET CE HE1 sing N N 279
MET CE HE2 sing N N 280
MET CE HE3 sing N N 281
MET OXT HXT sing N N 282
PHE N CA sing N N 283
PHE N H sing N N 284
PHE N H2 sing N N 285
PHE CA C sing N N 286
PHE CA CB sing N N 287
PHE CA HA sing N N 288
PHE C O doub N N 289
PHE C OXT sing N N 290
PHE CB CG sing N N 291
PHE CB HB2 sing N N 292
PHE CB HB3 sing N N 293
PHE CG CD1 doub Y N 294
PHE CG CD2 sing Y N 295
PHE CD1 CE1 sing Y N 296
PHE CD1 HD1 sing N N 297
PHE CD2 CE2 doub Y N 298
PHE CD2 HD2 sing N N 299
PHE CE1 CZ doub Y N 300
PHE CE1 HE1 sing N N 301
PHE CE2 CZ sing Y N 302
PHE CE2 HE2 sing N N 303
PHE CZ HZ sing N N 304
PHE OXT HXT sing N N 305
PRO N CA sing N N 306
PRO N CD sing N N 307
PRO N H sing N N 308
PRO CA C sing N N 309
PRO CA CB sing N N 310
PRO CA HA sing N N 311
PRO C O doub N N 312
PRO C OXT sing N N 313
PRO CB CG sing N N 314
PRO CB HB2 sing N N 315
PRO CB HB3 sing N N 316
PRO CG CD sing N N 317
PRO CG HG2 sing N N 318
PRO CG HG3 sing N N 319
PRO CD HD2 sing N N 320
PRO CD HD3 sing N N 321
PRO OXT HXT sing N N 322
SER N CA sing N N 323
SER N H sing N N 324
SER N H2 sing N N 325
SER CA C sing N N 326
SER CA CB sing N N 327
SER CA HA sing N N 328
SER C O doub N N 329
SER C OXT sing N N 330
SER CB OG sing N N 331
SER CB HB2 sing N N 332
SER CB HB3 sing N N 333
SER OG HG sing N N 334
SER OXT HXT sing N N 335
THR N CA sing N N 336
THR N H sing N N 337
THR N H2 sing N N 338
THR CA C sing N N 339
THR CA CB sing N N 340
THR CA HA sing N N 341
THR C O doub N N 342
THR C OXT sing N N 343
THR CB OG1 sing N N 344
THR CB CG2 sing N N 345
THR CB HB sing N N 346
THR OG1 HG1 sing N N 347
THR CG2 HG21 sing N N 348
THR CG2 HG22 sing N N 349
THR CG2 HG23 sing N N 350
THR OXT HXT sing N N 351
TRP N CA sing N N 352
TRP N H sing N N 353
TRP N H2 sing N N 354
TRP CA C sing N N 355
TRP CA CB sing N N 356
TRP CA HA sing N N 357
TRP C O doub N N 358
TRP C OXT sing N N 359
TRP CB CG sing N N 360
TRP CB HB2 sing N N 361
TRP CB HB3 sing N N 362
TRP CG CD1 doub Y N 363
TRP CG CD2 sing Y N 364
TRP CD1 NE1 sing Y N 365
TRP CD1 HD1 sing N N 366
TRP CD2 CE2 doub Y N 367
TRP CD2 CE3 sing Y N 368
TRP NE1 CE2 sing Y N 369
TRP NE1 HE1 sing N N 370
TRP CE2 CZ2 sing Y N 371
TRP CE3 CZ3 doub Y N 372
TRP CE3 HE3 sing N N 373
TRP CZ2 CH2 doub Y N 374
TRP CZ2 HZ2 sing N N 375
TRP CZ3 CH2 sing Y N 376
TRP CZ3 HZ3 sing N N 377
TRP CH2 HH2 sing N N 378
TRP OXT HXT sing N N 379
TYR N CA sing N N 380
TYR N H sing N N 381
TYR N H2 sing N N 382
TYR CA C sing N N 383
TYR CA CB sing N N 384
TYR CA HA sing N N 385
TYR C O doub N N 386
TYR C OXT sing N N 387
TYR CB CG sing N N 388
TYR CB HB2 sing N N 389
TYR CB HB3 sing N N 390
TYR CG CD1 doub Y N 391
TYR CG CD2 sing Y N 392
TYR CD1 CE1 sing Y N 393
TYR CD1 HD1 sing N N 394
TYR CD2 CE2 doub Y N 395
TYR CD2 HD2 sing N N 396
TYR CE1 CZ doub Y N 397
TYR CE1 HE1 sing N N 398
TYR CE2 CZ sing Y N 399
TYR CE2 HE2 sing N N 400
TYR CZ OH sing N N 401
TYR OH HH sing N N 402
TYR OXT HXT sing N N 403
VAL N CA sing N N 404
VAL N H sing N N 405
VAL N H2 sing N N 406
VAL CA C sing N N 407
VAL CA CB sing N N 408
VAL CA HA sing N N 409
VAL C O doub N N 410
VAL C OXT sing N N 411
VAL CB CG1 sing N N 412
VAL CB CG2 sing N N 413
VAL CB HB sing N N 414
VAL CG1 HG11 sing N N 415
VAL CG1 HG12 sing N N 416
VAL CG1 HG13 sing N N 417
VAL CG2 HG21 sing N N 418
VAL CG2 HG22 sing N N 419
VAL CG2 HG23 sing N N 420
VAL OXT HXT sing N N 421
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 BGC 1 B BGC 1 L LAT 1 n
B 2 GAL 2 B GAL 2 L LAT 1 n
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb
BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose
BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp
BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc
GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb
GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose
GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp
GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DGalpb1-4DGlcpb1-ROH 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][a2112h-1b_1-5]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0
3 2 '[][a-D-Glcp]{[(4+1)][b-D-Galp]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 2
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 GAL
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 BGC
_pdbx_entity_branch_link.atom_id_2 O4
_pdbx_entity_branch_link.leaving_atom_id_2 HO4
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 BGC 1 n
2 GAL 2 n
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1A3K
_pdbx_initial_refinement_model.details 'PDB ENTRY 1A3K'
#