HEADER TRANSFERASE 12-FEB-10 3LSN TITLE CRYSTAL STRUCTURE OF PUTATIVE GERANYLTRANSTRANSFERASE FROM PSEUDOMONAS TITLE 2 FLUORESCENS PF-5 COMPLEXED WITH MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLTRANSTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 220664; SOURCE 4 STRAIN: PF-5; SOURCE 5 GENE: PFL_5509; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 2 STRUCTURAL GENOMIX RESEARCH CONSORTIUM, NYSGXRC, ISOPRENE KEYWDS 3 BIOSYNTHESIS, TRANSFERASE, PSI-2, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 4 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 22-NOV-23 3LSN 1 REMARK REVDAT 6 06-SEP-23 3LSN 1 REMARK REVDAT 5 10-FEB-21 3LSN 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 21-NOV-18 3LSN 1 AUTHOR REVDAT 3 01-NOV-17 3LSN 1 REMARK REVDAT 2 13-JUL-11 3LSN 1 VERSN REVDAT 1 02-MAR-10 3LSN 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE GERANYLTRANSTRANSFERASE FROM JRNL TITL 2 PSEUDOMONAS FLUORESCENS PF-5 COMPLEXED WITH MAGNESIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.1 REMARK 3 NUMBER OF REFLECTIONS : 42920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2183 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 488 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 12.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2081 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.289 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2159 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2941 ; 1.205 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 4.008 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;31.079 ;24.222 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 358 ;14.816 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.032 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 345 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1632 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 0.925 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2237 ; 2.946 ;50.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 745 ; 6.651 ;50.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 696 ; 1.334 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 293 REMARK 3 RESIDUE RANGE : A 500 A 502 REMARK 3 RESIDUE RANGE : A 305 A 563 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8094 34.1471 12.9707 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: 0.0045 REMARK 3 T33: 0.0199 T12: -0.0028 REMARK 3 T13: -0.0021 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.2166 L22: 0.2165 REMARK 3 L33: 0.3721 L12: -0.0576 REMARK 3 L13: -0.1102 L23: 0.1342 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.0129 S13: -0.0158 REMARK 3 S21: 0.0374 S22: -0.0036 S23: 0.0193 REMARK 3 S31: 0.0211 S32: -0.0165 S33: 0.0046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3LSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42940 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 10.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LJI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MG CHLORIDE, 0.1 M HEPES, 25% REMARK 280 PEG 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.09100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.93750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.09100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.93750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 84.18200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 500 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 236 REMARK 465 LYS A 237 REMARK 465 ARG A 238 REMARK 465 GLN A 239 REMARK 465 GLY A 240 REMARK 465 ALA A 241 REMARK 465 ASP A 242 REMARK 465 ILE A 243 REMARK 465 ALA A 244 REMARK 465 ARG A 245 REMARK 465 ASP A 246 REMARK 465 LYS A 247 REMARK 465 ARG A 294 REMARK 465 ARG A 295 REMARK 465 SER A 296 REMARK 465 GLU A 297 REMARK 465 GLY A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 364 O HOH A 406 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 359 O HOH A 499 4545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 89 -109.02 -104.03 REMARK 500 PHE A 105 -107.52 -114.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 90 OD1 REMARK 620 2 ASP A 92 OD2 100.8 REMARK 620 3 HOH A 321 O 89.9 84.7 REMARK 620 4 HOH A 322 O 84.2 171.9 88.9 REMARK 620 5 HOH A 549 O 165.8 90.4 99.9 85.8 REMARK 620 6 HOH A 561 O 85.9 84.4 167.3 102.5 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 136 OE2 REMARK 620 2 HOH A 522 O 83.0 REMARK 620 3 HOH A 529 O 87.2 91.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 224 OD1 REMARK 620 2 HOH A 380 O 87.5 REMARK 620 3 HOH A 382 O 95.3 84.4 REMARK 620 4 HOH A 433 O 91.5 93.8 172.9 REMARK 620 5 HOH A 525 O 174.8 87.6 85.6 87.4 REMARK 620 6 HOH A 547 O 87.2 172.2 90.3 92.0 97.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-20027B RELATED DB: TARGETDB DBREF 3LSN A 4 296 UNP Q4K5A6 Q4K5A6_PSEF5 3 295 SEQADV 3LSN MSE A 1 UNP Q4K5A6 EXPRESSION TAG SEQADV 3LSN SER A 2 UNP Q4K5A6 EXPRESSION TAG SEQADV 3LSN LEU A 3 UNP Q4K5A6 EXPRESSION TAG SEQADV 3LSN GLU A 297 UNP Q4K5A6 EXPRESSION TAG SEQADV 3LSN GLY A 298 UNP Q4K5A6 EXPRESSION TAG SEQADV 3LSN HIS A 299 UNP Q4K5A6 EXPRESSION TAG SEQADV 3LSN HIS A 300 UNP Q4K5A6 EXPRESSION TAG SEQADV 3LSN HIS A 301 UNP Q4K5A6 EXPRESSION TAG SEQADV 3LSN HIS A 302 UNP Q4K5A6 EXPRESSION TAG SEQADV 3LSN HIS A 303 UNP Q4K5A6 EXPRESSION TAG SEQADV 3LSN HIS A 304 UNP Q4K5A6 EXPRESSION TAG SEQRES 1 A 304 MSE SER LEU THR ALA TYR GLN ALA SER SER GLN ALA ARG SEQRES 2 A 304 VAL ASP ALA ALA MSE HIS THR LEU PHE THR ALA PRO SER SEQRES 3 A 304 PRO GLU LEU ALA ARG LEU TYR GLU ALA MSE ARG TYR SER SEQRES 4 A 304 VAL MSE ASN GLY GLY LYS ARG VAL ARG PRO LEU LEU ALA SEQRES 5 A 304 TYR ALA ALA CYS GLU ALA LEU GLY GLY LYS PRO GLU GLN SEQRES 6 A 304 ALA ASN GLY ALA ALA CYS ALA VAL GLU LEU ILE HIS ALA SEQRES 7 A 304 TYR SER LEU VAL HIS ASP ASP LEU PRO ALA MSE ASP ASP SEQRES 8 A 304 ASP ASP LEU ARG ARG GLY GLN PRO THR THR HIS LYS ALA SEQRES 9 A 304 PHE ASP GLU ALA CYS ALA ILE LEU ALA GLY ASP GLY LEU SEQRES 10 A 304 GLN SER LEU ALA PHE SER ALA LEU LEU ASP PRO ALA LEU SEQRES 11 A 304 SER ASP ALA SER ALA GLU ILE ARG LEU ARG MSE VAL THR SEQRES 12 A 304 THR LEU ALA GLN ALA ALA GLY PRO ALA GLY MSE VAL GLY SEQRES 13 A 304 GLY GLN ALA ILE ASP LEU GLY SER VAL GLY LEU LYS LEU SEQRES 14 A 304 ASP GLN GLN ALA LEU GLU TYR MSE HIS ARG HIS LYS THR SEQRES 15 A 304 GLY ALA LEU ILE GLU ALA SER VAL ILE LEU GLY ALA LEU SEQRES 16 A 304 ALA SER GLY ARG ALA GLU LYS GLY GLU LEU LYS ALA LEU SEQRES 17 A 304 GLN THR TYR ALA GLN ALA ILE GLY LEU ALA PHE GLN VAL SEQRES 18 A 304 GLN ASP ASP ILE LEU ASP VAL GLU SER ASP THR ALA THR SEQRES 19 A 304 LEU GLY LYS ARG GLN GLY ALA ASP ILE ALA ARG ASP LYS SEQRES 20 A 304 PRO THR TYR PRO ALA LEU LEU GLY LEU ALA ALA ALA LYS SEQRES 21 A 304 GLU TYR ALA LEU GLU LEU ARG ASP GLN ALA LEU HIS ALA SEQRES 22 A 304 LEU ARG PRO PHE ASP ALA ALA ALA GLU PRO LEU ARG GLU SEQRES 23 A 304 LEU ALA ARG TYR ILE VAL GLU ARG ARG SER GLU GLY HIS SEQRES 24 A 304 HIS HIS HIS HIS HIS MODRES 3LSN MSE A 18 MET SELENOMETHIONINE MODRES 3LSN MSE A 36 MET SELENOMETHIONINE MODRES 3LSN MSE A 41 MET SELENOMETHIONINE MODRES 3LSN MSE A 89 MET SELENOMETHIONINE MODRES 3LSN MSE A 141 MET SELENOMETHIONINE MODRES 3LSN MSE A 154 MET SELENOMETHIONINE MODRES 3LSN MSE A 177 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 36 8 HET MSE A 41 8 HET MSE A 89 8 HET MSE A 141 13 HET MSE A 154 8 HET MSE A 177 13 HET MG A 500 1 HET MG A 501 1 HET MG A 502 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 MG 3(MG 2+) FORMUL 5 HOH *256(H2 O) HELIX 1 1 SER A 2 THR A 20 1 19 HELIX 2 2 LEU A 21 THR A 23 5 3 HELIX 3 3 SER A 26 GLU A 28 5 3 HELIX 4 4 LEU A 29 MSE A 41 1 13 HELIX 5 5 ARG A 46 LEU A 59 1 14 HELIX 6 6 LYS A 62 GLN A 65 5 4 HELIX 7 7 ALA A 66 ASP A 85 1 20 HELIX 8 8 THR A 100 PHE A 105 1 6 HELIX 9 9 ASP A 106 ASP A 127 1 22 HELIX 10 10 SER A 134 GLY A 150 1 17 HELIX 11 11 GLY A 153 SER A 164 1 12 HELIX 12 12 ASP A 170 THR A 182 1 13 HELIX 13 13 THR A 182 SER A 197 1 16 HELIX 14 14 GLU A 201 LEU A 235 1 35 HELIX 15 15 THR A 249 GLY A 255 1 7 HELIX 16 16 GLY A 255 LEU A 274 1 20 HELIX 17 17 ASP A 278 ALA A 280 5 3 HELIX 18 18 ALA A 281 GLU A 293 1 13 SHEET 1 A 2 LEU A 94 ARG A 95 0 SHEET 2 A 2 GLN A 98 PRO A 99 -1 O GLN A 98 N ARG A 95 LINK C ALA A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N HIS A 19 1555 1555 1.33 LINK C ALA A 35 N MSE A 36 1555 1555 1.34 LINK C MSE A 36 N ARG A 37 1555 1555 1.34 LINK C VAL A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N ASN A 42 1555 1555 1.33 LINK C ALA A 88 N MSE A 89 1555 1555 1.34 LINK C MSE A 89 N ASP A 90 1555 1555 1.34 LINK C ARG A 140 N MSE A 141 1555 1555 1.32 LINK C MSE A 141 N VAL A 142 1555 1555 1.33 LINK C GLY A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N VAL A 155 1555 1555 1.34 LINK C TYR A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N HIS A 178 1555 1555 1.30 LINK OD1 ASP A 90 MG MG A 502 1555 1555 2.30 LINK OD2 ASP A 92 MG MG A 502 1555 1555 2.07 LINK OE2 GLU A 136 MG MG A 500 1555 1555 2.06 LINK OD1 ASP A 224 MG MG A 501 1555 1555 2.02 LINK O HOH A 321 MG MG A 502 1555 1555 1.99 LINK O HOH A 322 MG MG A 502 1555 1555 1.99 LINK O HOH A 380 MG MG A 501 1555 1555 2.11 LINK O HOH A 382 MG MG A 501 1555 1555 2.03 LINK O HOH A 433 MG MG A 501 1555 1555 2.10 LINK MG MG A 500 O HOH A 522 1555 1555 2.03 LINK MG MG A 500 O HOH A 529 1555 1555 2.00 LINK MG MG A 501 O HOH A 525 1555 1555 2.14 LINK MG MG A 501 O HOH A 547 1555 1555 2.03 LINK MG MG A 502 O HOH A 549 1555 1555 2.12 LINK MG MG A 502 O HOH A 561 1555 1555 2.39 SITE 1 AC1 3 GLU A 136 HOH A 522 HOH A 529 SITE 1 AC2 6 ASP A 224 HOH A 380 HOH A 382 HOH A 433 SITE 2 AC2 6 HOH A 525 HOH A 547 SITE 1 AC3 6 ASP A 90 ASP A 92 HOH A 321 HOH A 322 SITE 2 AC3 6 HOH A 549 HOH A 561 CRYST1 84.182 47.875 75.982 90.00 120.78 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011879 0.000000 0.007076 0.00000 SCALE2 0.000000 0.020888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015319 0.00000