HEADER TRANSCRIPTION/DNA 12-FEB-10 3LSP TITLE CRYSTAL STRUCTURE OF DEST BOUND TO DESCB PROMOTER AND OLEOYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEST; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*TP*TP*AP*CP*AP*TP*CP*AP*GP*TP*GP*AP*AP*CP*GP*CP*TP*TP*GP*TP*TP*GP* COMPND 8 AP*CP*TP*CP*GP*AP*TP*TP*G)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*TP*CP*AP*AP*TP*CP*GP*AP*GP*TP*CP*AP*AP*CP*AP*AP*GP*CP*GP*TP*TP*CP* COMPND 14 AP*CP*TP*GP*AP*TP*GP*TP*A)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: DEST, PA4890; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS TRANSCRIPTIONAL REPRESSOR, DEST-DNA COMPLEX, TETR FAMILY, DNA- KEYWDS 2 BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION-DNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.J.MILLER,S.W.WHITE REVDAT 4 21-FEB-24 3LSP 1 REMARK REVDAT 3 13-OCT-21 3LSP 1 REMARK SEQADV REVDAT 2 18-AUG-10 3LSP 1 JRNL REVDAT 1 04-AUG-10 3LSP 0 JRNL AUTH D.J.MILLER,Y.M.ZHANG,C.SUBRAMANIAN,C.O.ROCK,S.W.WHITE JRNL TITL STRUCTURAL BASIS FOR THE TRANSCRIPTIONAL REGULATION OF JRNL TITL 2 MEMBRANE LIPID HOMEOSTASIS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 971 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20639888 JRNL DOI 10.1038/NSMB.1847 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 12098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 620 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 850 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1481 REMARK 3 NUCLEIC ACID ATOMS : 953 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.654 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.322 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2607 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3716 ; 1.283 ; 2.427 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 192 ; 6.040 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;37.702 ;21.642 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 249 ;19.002 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.099 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1631 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 960 ; 0.825 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1515 ; 1.575 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1647 ; 1.369 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2201 ; 2.177 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12753 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ML- 0.1 M MES PH7.0, 9%PEG 20K. REMARK 280 PROTEIN SAMPLE- 0.3 MM PROTEIN, 0.3 MM OLIGO, 0.3 MM 18:1DELTA9- REMARK 280 COA. DROP- 2UL ML + 2UL PROTEIN + 0.5 UL 1M AMMONIUM SULFATE., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.19250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.19250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.99400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.19250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.99700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.19250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.99100 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.19250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.19250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.99400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 39.19250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 110.99100 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 39.19250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.99700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -78.38500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -78.38500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 PRO A 175 REMARK 465 PRO A 176 REMARK 465 ALA A 177 REMARK 465 ALA A 178 REMARK 465 ASP A 179 REMARK 465 LEU A 180 REMARK 465 PRO A 181 REMARK 465 PRO A 182 REMARK 465 GLY A 206 REMARK 465 LEU A 207 REMARK 465 PRO A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 SER A 211 REMARK 465 VAL A 212 REMARK 465 ASP A 213 REMARK 465 LYS A 214 REMARK 465 LEU A 215 REMARK 465 ALA A 216 REMARK 465 ALA A 217 REMARK 465 ALA A 218 REMARK 465 LEU A 219 REMARK 465 GLU A 220 REMARK 465 DT B 0 REMARK 465 DT B 1 REMARK 465 DA B 2 REMARK 465 DC B 3 REMARK 465 DA B 4 REMARK 465 DT B 29 REMARK 465 DG B 30 REMARK 465 DT D 0 REMARK 465 DC D 1 REMARK 465 DA D 2 REMARK 465 DA D 3 REMARK 465 DT D 4 REMARK 465 DT D 29 REMARK 465 DA D 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 LEU A 85 CG CD1 CD2 REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 HIS A 183 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 184 CG CD1 CD2 REMARK 470 MET A 185 CG SD CE REMARK 470 HIS A 205 CG ND1 CD2 CE1 NE2 REMARK 470 DT B 28 C4' O4' C3' O3' C2' C1' N1 REMARK 470 DT B 28 C2 O2 N3 C4 O4 C5 C7 REMARK 470 DT B 28 C6 REMARK 470 DG D 28 C4' O4' C3' O3' C2' C1' N9 REMARK 470 DG D 28 C8 N7 C5 C6 O6 N1 C2 REMARK 470 DG D 28 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 6 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC B 6 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG B 8 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA B 11 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA B 12 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC B 13 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC B 15 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC B 23 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DC B 23 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG D 6 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG D 6 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG D 8 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA D 12 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC D 13 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA D 14 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA D 15 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC D 23 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC D 23 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -43.23 -132.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 221 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 223 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LSJ RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT DNA REMARK 900 RELATED ID: 3LSR RELATED DB: PDB DBREF 3LSP A 1 209 UNP Q9HUS3 Q9HUS3_PSEAE 1 209 DBREF 3LSP B 0 30 PDB 3LSP 3LSP 0 30 DBREF 3LSP D 0 30 PDB 3LSP 3LSP 0 30 SEQADV 3LSP ALA A 2 UNP Q9HUS3 SER 2 ENGINEERED MUTATION SEQADV 3LSP SER A 210 UNP Q9HUS3 EXPRESSION TAG SEQADV 3LSP SER A 211 UNP Q9HUS3 EXPRESSION TAG SEQADV 3LSP VAL A 212 UNP Q9HUS3 EXPRESSION TAG SEQADV 3LSP ASP A 213 UNP Q9HUS3 EXPRESSION TAG SEQADV 3LSP LYS A 214 UNP Q9HUS3 EXPRESSION TAG SEQADV 3LSP LEU A 215 UNP Q9HUS3 EXPRESSION TAG SEQADV 3LSP ALA A 216 UNP Q9HUS3 EXPRESSION TAG SEQADV 3LSP ALA A 217 UNP Q9HUS3 EXPRESSION TAG SEQADV 3LSP ALA A 218 UNP Q9HUS3 EXPRESSION TAG SEQADV 3LSP LEU A 219 UNP Q9HUS3 EXPRESSION TAG SEQADV 3LSP GLU A 220 UNP Q9HUS3 EXPRESSION TAG SEQRES 1 A 220 MET ALA SER PRO ARG ALA GLU GLN LYS GLN GLN THR ARG SEQRES 2 A 220 HIS ALA LEU MET SER ALA ALA ARG HIS LEU MET GLU SER SEQRES 3 A 220 GLY ARG GLY PHE GLY SER LEU SER LEU ARG GLU VAL THR SEQRES 4 A 220 ARG ALA ALA GLY ILE VAL PRO ALA GLY PHE TYR ARG HIS SEQRES 5 A 220 PHE SER ASP MET ASP GLN LEU GLY LEU ALA LEU VAL ALA SEQRES 6 A 220 GLU VAL ASP GLU THR PHE ARG ALA THR LEU ARG ALA VAL SEQRES 7 A 220 ARG ARG ASN GLU PHE GLU LEU GLY GLY LEU ILE ASP ALA SEQRES 8 A 220 SER VAL ARG ILE PHE LEU ASP ALA VAL GLY ALA ASN ARG SEQRES 9 A 220 SER GLN PHE LEU PHE LEU ALA ARG GLU GLN TYR GLY GLY SEQRES 10 A 220 SER LEU PRO ILE ARG GLN ALA ILE ALA SER LEU ARG GLN SEQRES 11 A 220 ARG ILE THR ASP ASP LEU ALA ALA ASP LEU ALA LEU LEU SEQRES 12 A 220 ASN LYS MET PRO HIS LEU ASP GLY ALA ALA LEU ASP VAL SEQRES 13 A 220 PHE ALA ASP LEU VAL VAL LYS THR VAL PHE ALA THR LEU SEQRES 14 A 220 PRO GLU LEU ILE ASP PRO PRO ALA ALA ASP LEU PRO PRO SEQRES 15 A 220 HIS LEU MET PRO ALA ALA LYS ILE THR HIS GLN LEU ARG SEQRES 16 A 220 PHE ILE MET ILE GLY GLY LYS HIS TRP HIS GLY LEU PRO SEQRES 17 A 220 GLY SER SER VAL ASP LYS LEU ALA ALA ALA LEU GLU SEQRES 1 B 31 DT DT DA DC DA DT DC DA DG DT DG DA DA SEQRES 2 B 31 DC DG DC DT DT DG DT DT DG DA DC DT DC SEQRES 3 B 31 DG DA DT DT DG SEQRES 1 D 31 DT DC DA DA DT DC DG DA DG DT DC DA DA SEQRES 2 D 31 DC DA DA DG DC DG DT DT DC DA DC DT DG SEQRES 3 D 31 DA DT DG DT DA HET OLA A 221 18 HET SO4 A 222 5 HET SO4 A 223 5 HETNAM OLA OLEIC ACID HETNAM SO4 SULFATE ION FORMUL 4 OLA C18 H34 O2 FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *20(H2 O) HELIX 1 1 ALA A 6 MET A 24 1 19 HELIX 2 2 GLU A 25 GLY A 27 5 3 HELIX 3 3 GLY A 29 LEU A 33 5 5 HELIX 4 4 SER A 34 GLY A 43 1 10 HELIX 5 5 VAL A 45 HIS A 52 5 8 HELIX 6 6 ASP A 55 GLU A 82 1 28 HELIX 7 7 GLY A 87 ASN A 103 1 17 HELIX 8 8 ASN A 103 GLN A 114 1 12 HELIX 9 9 SER A 118 ASN A 144 1 27 HELIX 10 10 ASP A 150 LEU A 169 1 20 HELIX 11 11 PRO A 170 ILE A 173 5 4 HELIX 12 12 MET A 185 HIS A 203 1 19 SITE 1 AC1 4 LEU A 75 GLU A 82 SER A 92 MET A 198 SITE 1 AC2 6 HIS A 14 SER A 18 ARG A 21 HIS A 22 SITE 2 AC2 6 HOH A 236 HOH A 242 SITE 1 AC3 2 ILE A 89 ARG A 195 CRYST1 78.385 78.385 147.988 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012758 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006757 0.00000