HEADER HYDROLASE 14-FEB-10 3LT3 TITLE CRYSTAL STRUCTURE OF RV3671C FROM M. TUBERCULOSIS H37RV, SER343ALA TITLE 2 MUTANT, INACTIVE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: POSSIBLE MEMBRANE-ASSOCIATED SERINE PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RV3671C (179-397); COMPND 5 SYNONYM: SERINE PROTEASE; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: MT3772, RV3671C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19B-PPS KEYWDS SERINE PROTEASE, H37RV, HTRA, HYDROLASE, PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR T.BISWAS,J.SMALL,O.VANDAL,S.EHRT,O.V.TSODIKOV REVDAT 2 06-SEP-23 3LT3 1 SEQADV REVDAT 1 03-NOV-10 3LT3 0 JRNL AUTH T.BISWAS,J.SMALL,O.VANDAL,T.ODAIRA,H.DENG,S.EHRT, JRNL AUTH 2 O.V.TSODIKOV JRNL TITL STRUCTURAL INSIGHT INTO SERINE PROTEASE RV3671C THAT JRNL TITL 2 PROTECTS M. TUBERCULOSIS FROM OXIDATIVE AND ACIDIC STRESS. JRNL REF STRUCTURE V. 18 1353 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20947023 JRNL DOI 10.1016/J.STR.2010.06.017 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 18853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1018 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1188 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.50000 REMARK 3 B13 (A**2) : 1.89000 REMARK 3 B23 (A**2) : 1.06000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.240 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.469 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2882 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3971 ; 0.926 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 4.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;33.662 ;24.205 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;13.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ; 8.232 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 493 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2201 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1342 ; 0.171 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1990 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.065 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2041 ; 0.279 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3245 ; 0.410 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 909 ; 0.471 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 726 ; 0.826 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7867 -0.2735 1.2208 REMARK 3 T TENSOR REMARK 3 T11: -0.1605 T22: -0.0924 REMARK 3 T33: -0.1055 T12: 0.0161 REMARK 3 T13: -0.0279 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.1303 L22: 4.4482 REMARK 3 L33: 2.4543 L12: -0.2573 REMARK 3 L13: -0.6521 L23: -0.1159 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.0415 S13: 0.0215 REMARK 3 S21: 0.0586 S22: 0.0841 S23: 0.2191 REMARK 3 S31: -0.0123 S32: -0.0920 S33: -0.0741 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 500 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8031 6.1056 -25.6716 REMARK 3 T TENSOR REMARK 3 T11: -0.1894 T22: -0.0398 REMARK 3 T33: -0.1288 T12: 0.0130 REMARK 3 T13: -0.0325 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.9939 L22: 2.9002 REMARK 3 L33: 4.8959 L12: 1.4471 REMARK 3 L13: -1.9924 L23: -0.8757 REMARK 3 S TENSOR REMARK 3 S11: 0.1272 S12: -0.2504 S13: 0.0959 REMARK 3 S21: -0.0327 S22: -0.0970 S23: -0.0935 REMARK 3 S31: -0.0002 S32: 0.5868 S33: -0.0301 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3K6Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 2.1 M AMMONIUM REMARK 280 PHOSPHATE MONOBASIC, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -49.62275 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -13.07285 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 51.25121 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 211 REMARK 465 PRO A 212 REMARK 465 ARG A 213 REMARK 465 CYS A 214 REMARK 465 GLN A 215 REMARK 465 LYS A 216 REMARK 465 THR A 392 REMARK 465 GLY A 393 REMARK 465 ALA A 394 REMARK 465 CYS A 395 REMARK 465 VAL A 396 REMARK 465 SER A 397 REMARK 465 ALA B 211 REMARK 465 PRO B 212 REMARK 465 ARG B 213 REMARK 465 GLY B 248 REMARK 465 ALA B 362 REMARK 465 ILE B 363 REMARK 465 ASP B 364 REMARK 465 ASP B 365 REMARK 465 ALA B 366 REMARK 465 PRO B 389 REMARK 465 VAL B 390 REMARK 465 GLY B 391 REMARK 465 THR B 392 REMARK 465 GLY B 393 REMARK 465 ALA B 394 REMARK 465 CYS B 395 REMARK 465 VAL B 396 REMARK 465 SER B 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 181 CG1 CG2 REMARK 470 ASN A 241 CG OD1 ND2 REMARK 470 ASP A 249 CG OD1 OD2 REMARK 470 LYS A 250 CE NZ REMARK 470 ASP A 364 CG OD1 OD2 REMARK 470 ASP A 365 CG OD1 OD2 REMARK 470 VAL B 181 CG1 CG2 REMARK 470 ILE B 182 CG1 CG2 CD1 REMARK 470 ARG B 208 CD NE CZ NH1 NH2 REMARK 470 LEU B 210 CG CD1 CD2 REMARK 470 GLN B 215 CG CD OE1 NE2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 GLU B 219 CG CD OE1 OE2 REMARK 470 ASN B 241 CG OD1 ND2 REMARK 470 ASP B 249 CG OD1 OD2 REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 GLU B 253 CG CD OE1 OE2 REMARK 470 TYR B 259 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 290 CG OD1 OD2 REMARK 470 GLU B 311 CG CD OE1 OE2 REMARK 470 GLU B 325 CD OE1 OE2 REMARK 470 ASP B 337 CB CG OD1 OD2 REMARK 470 GLU B 339 CD OE1 OE2 REMARK 470 GLN B 340 CG CD OE1 NE2 REMARK 470 GLU B 367 CD OE1 OE2 REMARK 470 GLN B 388 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 238 107.47 -51.74 REMARK 500 ALA A 336 147.24 -171.68 REMARK 500 ILE B 182 76.90 53.31 REMARK 500 THR B 387 -95.55 -164.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K6Y RELATED DB: PDB REMARK 900 RELATED ID: 3K6Z RELATED DB: PDB DBREF 3LT3 A 181 397 UNP O69639 O69639_MYCTU 181 397 DBREF 3LT3 B 181 397 UNP O69639 O69639_MYCTU 181 397 SEQADV 3LT3 ALA A 343 UNP O69639 SER 343 ENGINEERED MUTATION SEQADV 3LT3 ALA B 343 UNP O69639 SER 343 ENGINEERED MUTATION SEQRES 1 A 217 VAL ILE PRO VAL ALA SER PRO ASP PRO ALA LEU VAL ASN SEQRES 2 A 217 ASN PRO VAL VAL ALA ALA THR GLU PRO SER VAL VAL LYS SEQRES 3 A 217 ILE ARG SER LEU ALA PRO ARG CYS GLN LYS VAL LEU GLU SEQRES 4 A 217 GLY THR GLY PHE VAL ILE SER PRO ASP ARG VAL MET THR SEQRES 5 A 217 ASN ALA HIS VAL VAL ALA GLY SER ASN ASN VAL THR VAL SEQRES 6 A 217 TYR ALA GLY ASP LYS PRO PHE GLU ALA THR VAL VAL SER SEQRES 7 A 217 TYR ASP PRO SER VAL ASP VAL ALA ILE LEU ALA VAL PRO SEQRES 8 A 217 HIS LEU PRO PRO PRO PRO LEU VAL PHE ALA ALA GLU PRO SEQRES 9 A 217 ALA LYS THR GLY ALA ASP VAL VAL VAL LEU GLY TYR PRO SEQRES 10 A 217 GLY GLY GLY ASN PHE THR ALA THR PRO ALA ARG ILE ARG SEQRES 11 A 217 GLU ALA ILE ARG LEU SER GLY PRO ASP ILE TYR GLY ASP SEQRES 12 A 217 PRO GLU PRO VAL THR ARG ASP VAL TYR THR ILE ARG ALA SEQRES 13 A 217 ASP VAL GLU GLN GLY ASP ALA GLY GLY PRO LEU ILE ASP SEQRES 14 A 217 LEU ASN GLY GLN VAL LEU GLY VAL VAL PHE GLY ALA ALA SEQRES 15 A 217 ILE ASP ASP ALA GLU THR GLY PHE VAL LEU THR ALA GLY SEQRES 16 A 217 GLU VAL ALA GLY GLN LEU ALA LYS ILE GLY ALA THR GLN SEQRES 17 A 217 PRO VAL GLY THR GLY ALA CYS VAL SER SEQRES 1 B 217 VAL ILE PRO VAL ALA SER PRO ASP PRO ALA LEU VAL ASN SEQRES 2 B 217 ASN PRO VAL VAL ALA ALA THR GLU PRO SER VAL VAL LYS SEQRES 3 B 217 ILE ARG SER LEU ALA PRO ARG CYS GLN LYS VAL LEU GLU SEQRES 4 B 217 GLY THR GLY PHE VAL ILE SER PRO ASP ARG VAL MET THR SEQRES 5 B 217 ASN ALA HIS VAL VAL ALA GLY SER ASN ASN VAL THR VAL SEQRES 6 B 217 TYR ALA GLY ASP LYS PRO PHE GLU ALA THR VAL VAL SER SEQRES 7 B 217 TYR ASP PRO SER VAL ASP VAL ALA ILE LEU ALA VAL PRO SEQRES 8 B 217 HIS LEU PRO PRO PRO PRO LEU VAL PHE ALA ALA GLU PRO SEQRES 9 B 217 ALA LYS THR GLY ALA ASP VAL VAL VAL LEU GLY TYR PRO SEQRES 10 B 217 GLY GLY GLY ASN PHE THR ALA THR PRO ALA ARG ILE ARG SEQRES 11 B 217 GLU ALA ILE ARG LEU SER GLY PRO ASP ILE TYR GLY ASP SEQRES 12 B 217 PRO GLU PRO VAL THR ARG ASP VAL TYR THR ILE ARG ALA SEQRES 13 B 217 ASP VAL GLU GLN GLY ASP ALA GLY GLY PRO LEU ILE ASP SEQRES 14 B 217 LEU ASN GLY GLN VAL LEU GLY VAL VAL PHE GLY ALA ALA SEQRES 15 B 217 ILE ASP ASP ALA GLU THR GLY PHE VAL LEU THR ALA GLY SEQRES 16 B 217 GLU VAL ALA GLY GLN LEU ALA LYS ILE GLY ALA THR GLN SEQRES 17 B 217 PRO VAL GLY THR GLY ALA CYS VAL SER FORMUL 3 HOH *162(H2 O) HELIX 1 1 ASP A 188 ASN A 193 5 6 HELIX 2 2 ASN A 194 GLU A 201 1 8 HELIX 3 3 ALA A 234 ALA A 238 1 5 HELIX 4 4 TYR A 296 GLY A 300 5 5 HELIX 5 5 GLU A 339 ALA A 343 5 5 HELIX 6 6 ALA A 374 GLN A 388 1 15 HELIX 7 7 ASP B 188 ASN B 193 5 6 HELIX 8 8 ASN B 194 GLU B 201 1 8 HELIX 9 9 TYR B 296 GLY B 300 5 5 HELIX 10 10 GLU B 339 ALA B 343 5 5 HELIX 11 11 ALA B 374 ALA B 386 1 13 SHEET 1 A 7 VAL A 204 SER A 209 0 SHEET 2 A 7 LEU A 218 SER A 226 -1 O LEU A 218 N SER A 209 SHEET 3 A 7 ARG A 229 ASN A 233 -1 O ARG A 229 N SER A 226 SHEET 4 A 7 VAL A 265 ALA A 269 -1 O LEU A 268 N VAL A 230 SHEET 5 A 7 PRO A 251 SER A 258 -1 N THR A 255 O ALA A 269 SHEET 6 A 7 VAL A 243 TYR A 246 -1 N VAL A 245 O PHE A 252 SHEET 7 A 7 VAL A 204 SER A 209 -1 N LYS A 206 O TYR A 246 SHEET 1 B 7 ASP A 290 GLY A 295 0 SHEET 2 B 7 THR A 303 SER A 316 -1 O THR A 305 N VAL A 293 SHEET 3 B 7 THR A 328 ARG A 335 -1 O ARG A 329 N LEU A 315 SHEET 4 B 7 THR A 368 THR A 373 -1 O VAL A 371 N TYR A 332 SHEET 5 B 7 VAL A 354 ALA A 361 -1 N GLY A 360 O PHE A 370 SHEET 6 B 7 PRO A 346 ILE A 348 -1 N LEU A 347 O LEU A 355 SHEET 7 B 7 ASP A 290 GLY A 295 -1 N VAL A 292 O ILE A 348 SHEET 1 C 7 VAL B 204 LEU B 210 0 SHEET 2 C 7 LEU B 218 SER B 226 -1 O GLY B 222 N VAL B 205 SHEET 3 C 7 ARG B 229 ASN B 233 -1 O MET B 231 N PHE B 223 SHEET 4 C 7 VAL B 265 ALA B 269 -1 O ALA B 266 N THR B 232 SHEET 5 C 7 PRO B 251 SER B 258 -1 N THR B 255 O ALA B 269 SHEET 6 C 7 ASN B 242 TYR B 246 -1 N VAL B 245 O PHE B 252 SHEET 7 C 7 VAL B 204 LEU B 210 -1 N ARG B 208 O THR B 244 SHEET 1 D 7 ASP B 290 GLY B 295 0 SHEET 2 D 7 THR B 303 SER B 316 -1 O THR B 305 N VAL B 293 SHEET 3 D 7 THR B 328 ARG B 335 -1 O THR B 333 N ARG B 310 SHEET 4 D 7 THR B 368 THR B 373 -1 O VAL B 371 N TYR B 332 SHEET 5 D 7 VAL B 354 GLY B 360 -1 N GLY B 360 O PHE B 370 SHEET 6 D 7 PRO B 346 ILE B 348 -1 N LEU B 347 O LEU B 355 SHEET 7 D 7 ASP B 290 GLY B 295 -1 N VAL B 292 O ILE B 348 CISPEP 1 GLN A 388 PRO A 389 0 -2.10 CRYST1 42.603 44.207 53.356 101.68 97.56 105.05 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023473 0.006311 0.004824 0.00000 SCALE2 0.000000 0.023424 0.005975 0.00000 SCALE3 0.000000 0.000000 0.019512 0.00000