HEADER CELL ADHESION 15-FEB-10 3LT7 TITLE A TRANSITION FROM STRONG RIGHT-HANDED TO CANONICAL LEFT-HANDED TITLE 2 SUPERCOILING IN A CONSERVED COILED COIL SEGMENT OF TRIMERIC TITLE 3 AUTOTRANSPORTER ADHESINS - THE M3 MUTANT STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESIN YADA; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 GENE: YADA, INVA, YOP1, YOPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ADHESION, COILED COIL, TRIMERIC AUTOTRANSPORTER, CELL ADHESION, CELL KEYWDS 2 MEMBRANE, CELL OUTER MEMBRANE, MEMBRANE, PLASMID, VIRULENCE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,B.HERNANDEZ-ALVAREZ,A.N.LUPAS REVDAT 3 21-FEB-24 3LT7 1 SEQADV REVDAT 2 05-MAY-10 3LT7 1 JRNL REVDAT 1 31-MAR-10 3LT7 0 JRNL AUTH B.H.ALVAREZ,M.GRUBER,A.URSINUS,S.DUNIN-HORKAWICZ,A.N.LUPAS, JRNL AUTH 2 K.ZETH JRNL TITL A TRANSITION FROM STRONG RIGHT-HANDED TO CANONICAL JRNL TITL 2 LEFT-HANDED SUPERCOILING IN A CONSERVED COILED-COIL SEGMENT JRNL TITL 3 OF TRIMERIC AUTOTRANSPORTER ADHESINS. JRNL REF J.STRUCT.BIOL. V. 170 236 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20178846 JRNL DOI 10.1016/J.JSB.2010.02.009 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.3 REMARK 3 NUMBER OF REFLECTIONS : 54137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2931 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3941 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2795 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.49000 REMARK 3 B22 (A**2) : 22.27000 REMARK 3 B33 (A**2) : -15.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.027 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.021 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.780 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2864 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3856 ; 1.792 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 5.495 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;37.349 ;24.580 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;19.767 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.116 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2038 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1755 ; 1.462 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2833 ; 2.000 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1109 ; 3.142 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1016 ; 4.283 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2864 ; 1.902 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 145 ; 5.421 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2828 ; 2.751 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 387 ; 0.23 ; 5.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 387 ; 1.54 ; 10.00 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.536 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H,-K,-L REMARK 3 TWIN FRACTION : 0.464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54137 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : 0.02660 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.42350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 47 REMARK 465 SER A 48 REMARK 465 SER A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 LEU A 52 REMARK 465 ASN A 53 REMARK 465 SER A 54 REMARK 465 LEU A 55 REMARK 465 PHE A 56 REMARK 465 LYS B -7 REMARK 465 SER B -6 REMARK 465 SER B -5 REMARK 465 LYS C -7 REMARK 465 SER C -6 REMARK 465 SER C -5 REMARK 465 LEU C 55 REMARK 465 PHE C 56 REMARK 465 ALA D 47 REMARK 465 SER D 48 REMARK 465 SER D 49 REMARK 465 ALA D 50 REMARK 465 ALA D 51 REMARK 465 LEU D 52 REMARK 465 ASN D 53 REMARK 465 SER D 54 REMARK 465 LEU D 55 REMARK 465 PHE D 56 REMARK 465 LYS E -7 REMARK 465 SER E -6 REMARK 465 SER E -5 REMARK 465 LYS F -7 REMARK 465 SER F -6 REMARK 465 SER F -5 REMARK 465 LEU F 55 REMARK 465 PHE F 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 54 OG REMARK 470 PHE B 56 O CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS C -4 CG ND1 CD2 CE1 NE2 REMARK 470 SER E 54 OG REMARK 470 PHE E 56 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS F -4 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR F 23 O HOH F 66 1.75 REMARK 500 OE1 GLN D 22 O HOH D 72 1.86 REMARK 500 O ALA F 16 O HOH F 126 1.88 REMARK 500 O GLU F 32 O HOH F 67 1.90 REMARK 500 O HOH C 64 O HOH C 79 1.92 REMARK 500 CE1 PHE B 28 OE2 GLU B 32 1.92 REMARK 500 CE LYS E 27 O HOH E 71 1.92 REMARK 500 O THR B 5 O HOH B 70 1.93 REMARK 500 OG SER B 10 O HOH B 141 1.98 REMARK 500 N THR B 8 O HOH B 70 2.02 REMARK 500 O VAL B 9 O HOH B 146 2.05 REMARK 500 O ARG C 34 O HOH C 125 2.06 REMARK 500 OE2 GLU C 39 O HOH C 70 2.09 REMARK 500 NZ LYS D 27 O HOH D 62 2.11 REMARK 500 CE1 HIS F 29 O HOH F 100 2.13 REMARK 500 OG1 THR B 0 O HOH B 83 2.15 REMARK 500 CG2 THR F 13 O HOH F 142 2.17 REMARK 500 O VAL A 7 OG SER A 10 2.18 REMARK 500 O HOH E 59 O HOH E 117 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN F 22 O HOH A 112 1655 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 46 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG F 18 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -6 -4.94 -158.67 REMARK 500 THR A 5 -38.28 -34.42 REMARK 500 SER D -6 -30.21 -139.34 REMARK 500 LEU D 45 -39.60 -37.76 REMARK 500 SER F 49 -71.17 -50.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LT6 RELATED DB: PDB REMARK 900 RELATED ID: 3H7X RELATED DB: PDB REMARK 900 RELATED ID: 3H7Z RELATED DB: PDB DBREF 3LT7 A -7 56 UNP P31489 YADA1_YEREN 333 396 DBREF 3LT7 B -7 56 UNP P31489 YADA1_YEREN 333 396 DBREF 3LT7 C -7 56 UNP P31489 YADA1_YEREN 333 396 DBREF 3LT7 D -7 56 UNP P31489 YADA1_YEREN 333 396 DBREF 3LT7 E -7 56 UNP P31489 YADA1_YEREN 333 396 DBREF 3LT7 F -7 56 UNP P31489 YADA1_YEREN 333 396 SEQADV 3LT7 HIS A 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT7 GLU A 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT7 GLU A 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT7 LYS A 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT7 LEU A 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT7 LEU A 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT7 LEU A 45 UNP P31489 GLY 385 CONFLICT SEQADV 3LT7 HIS B 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT7 GLU B 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT7 GLU B 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT7 LYS B 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT7 LEU B 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT7 LEU B 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT7 LEU B 45 UNP P31489 GLY 385 CONFLICT SEQADV 3LT7 HIS C 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT7 GLU C 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT7 GLU C 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT7 LYS C 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT7 LEU C 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT7 LEU C 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT7 LEU C 45 UNP P31489 GLY 385 CONFLICT SEQADV 3LT7 HIS D 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT7 GLU D 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT7 GLU D 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT7 LYS D 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT7 LEU D 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT7 LEU D 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT7 LEU D 45 UNP P31489 GLY 385 CONFLICT SEQADV 3LT7 HIS E 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT7 GLU E 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT7 GLU E 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT7 LYS E 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT7 LEU E 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT7 LEU E 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT7 LEU E 45 UNP P31489 GLY 385 CONFLICT SEQADV 3LT7 HIS F 29 UNP P31489 ARG 369 CONFLICT SEQADV 3LT7 GLU F 32 UNP P31489 ASP 372 CONFLICT SEQADV 3LT7 GLU F 39 UNP P31489 ASP 379 CONFLICT SEQADV 3LT7 LYS F 40 UNP P31489 THR 380 CONFLICT SEQADV 3LT7 LEU F 42 UNP P31489 VAL 382 CONFLICT SEQADV 3LT7 LEU F 43 UNP P31489 ASP 383 CONFLICT SEQADV 3LT7 LEU F 45 UNP P31489 GLY 385 CONFLICT SEQRES 1 A 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 A 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 A 64 GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN LEU SEQRES 4 A 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 A 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE SEQRES 1 B 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 B 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 B 64 GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN LEU SEQRES 4 B 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 B 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE SEQRES 1 C 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 C 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 C 64 GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN LEU SEQRES 4 C 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 C 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE SEQRES 1 D 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 D 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 D 64 GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN LEU SEQRES 4 D 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 D 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE SEQRES 1 E 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 E 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 E 64 GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN LEU SEQRES 4 E 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 E 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE SEQRES 1 F 64 LYS SER SER HIS THR LEU LYS THR ALA ASN SER TYR THR SEQRES 2 F 64 ASP VAL THR VAL SER ASN SER THR LYS LYS ALA ILE ARG SEQRES 3 F 64 GLU SER ASN GLN TYR THR ASP HIS LYS PHE HIS GLN LEU SEQRES 4 F 64 GLU ASN ARG LEU ASP LYS LEU GLU LYS ARG LEU LEU LYS SEQRES 5 F 64 LEU LEU ALA SER SER ALA ALA LEU ASN SER LEU PHE FORMUL 7 HOH *145(H2 O) HELIX 1 1 SER A -6 LEU A 46 1 53 HELIX 2 2 HIS B -4 PHE B 56 1 61 HELIX 3 3 HIS C -4 ASN C 53 1 58 HELIX 4 4 SER D -6 LEU D 46 1 53 HELIX 5 5 HIS E -4 PHE E 56 1 61 HELIX 6 6 HIS F -4 ALA F 50 1 55 CISPEP 1 LYS A -7 SER A -6 0 10.42 CISPEP 2 ASN C 53 SER C 54 0 -6.59 CISPEP 3 LYS D -7 SER D -6 0 4.65 CISPEP 4 ASN F 53 SER F 54 0 7.85 CRYST1 40.032 114.847 48.188 90.00 90.00 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020752 0.00000