HEADER HYDROLASE 17-FEB-10 3LU9 TITLE CRYSTAL STRUCTURE OF HUMAN THROMBIN MUTANT S195A IN COMPLEX WITH THE TITLE 2 EXTRACELLULAR FRAGMENT OF HUMAN PAR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTHROMBIN; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, COMPND 5 ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN LIGHT CHAIN, THROMBIN HEAVY COMPND 6 CHAIN; COMPND 7 EC: 3.4.21.5; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PROTHROMBIN; COMPND 12 CHAIN: B, E; COMPND 13 SYNONYM: COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, COMPND 14 ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN LIGHT CHAIN, THROMBIN HEAVY COMPND 15 CHAIN; COMPND 16 EC: 3.4.21.5; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: PROTEINASE-ACTIVATED RECEPTOR 1; COMPND 20 CHAIN: C, F; COMPND 21 SYNONYM: PAR-1, THROMBIN RECEPTOR, COAGULATION FACTOR II RECEPTOR; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2, HUMAN; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: F2; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: F2R, CF2R, PAR1, TR; SOURCE 20 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS SERINE PROTEASE, ACUTE PHASE, BLOOD COAGULATION, CALCIUM, CLEAVAGE ON KEYWDS 2 PAIR OF BASIC RESIDUES, DISEASE MUTATION, DISULFIDE BOND, GAMMA- KEYWDS 3 CARBOXYGLUTAMIC ACID, GLYCOPROTEIN, HYDROLASE, KRINGLE, KEYWDS 4 PHARMACEUTICAL, POLYMORPHISM, PROTEASE, SECRETED, ZYMOGEN, CELL KEYWDS 5 MEMBRANE, G-PROTEIN COUPLED RECEPTOR, MEMBRANE, PHOSPHOPROTEIN, KEYWDS 6 RECEPTOR, TRANSDUCER, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR P.S.GANDHI,Z.CHEN,E.DI CERA REVDAT 5 06-SEP-23 3LU9 1 REMARK REVDAT 4 13-OCT-21 3LU9 1 REMARK SEQADV HETSYN REVDAT 3 29-JUL-20 3LU9 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 26-MAY-10 3LU9 1 JRNL REVDAT 1 16-MAR-10 3LU9 0 JRNL AUTH P.S.GANDHI,Z.CHEN,E.DI CERA JRNL TITL CRYSTAL STRUCTURE OF THROMBIN BOUND TO THE UNCLEAVED JRNL TITL 2 EXTRACELLULAR FRAGMENT OF PAR1. JRNL REF J.BIOL.CHEM. V. 285 15393 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20236938 JRNL DOI 10.1074/JBC.M110.115337 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.O.PINEDA,C.J.CARRELL,L.A.BUSH,S.PRASAD,S.CACCIA,Z.CHEN, REMARK 1 AUTH 2 F.S.MATHEWS,E.DI CERA REMARK 1 TITL MOLECULAR DISSECTION OF NA+ BINDING TO THROMBIN REMARK 1 REF J.BIOL.CHEM. V. 279 31842 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15152000 REMARK 1 DOI 10.1074/JBC.M401756200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : -1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 60703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3162 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4400 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5215 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 698 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : -0.12000 REMARK 3 B23 (A**2) : 0.06000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.991 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5388 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7279 ; 1.495 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 631 ; 6.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;34.329 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 933 ;16.644 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;15.866 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 752 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4128 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3188 ; 0.753 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5137 ; 1.353 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2200 ; 2.115 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2142 ; 3.331 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1528 8.5286 -14.4363 REMARK 3 T TENSOR REMARK 3 T11: 0.4904 T22: 0.2628 REMARK 3 T33: 0.1551 T12: -0.1457 REMARK 3 T13: -0.0642 T23: 0.0631 REMARK 3 L TENSOR REMARK 3 L11: 0.9623 L22: 4.1827 REMARK 3 L33: 5.1874 L12: 0.7869 REMARK 3 L13: 0.2078 L23: 0.3268 REMARK 3 S TENSOR REMARK 3 S11: -0.3107 S12: 0.4072 S13: 0.2425 REMARK 3 S21: -1.0680 S22: 0.3400 S23: 0.2550 REMARK 3 S31: 0.7135 S32: -0.1611 S33: -0.0294 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2071 18.5126 4.9601 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.0512 REMARK 3 T33: 0.1005 T12: 0.0005 REMARK 3 T13: 0.0142 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 1.8518 L22: 11.0094 REMARK 3 L33: 2.7609 L12: -0.6312 REMARK 3 L13: 0.2162 L23: -3.5804 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: -0.0473 S13: 0.1963 REMARK 3 S21: 0.5999 S22: 0.1176 S23: 0.1781 REMARK 3 S31: -0.4701 S32: 0.0601 S33: -0.0882 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 52 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7555 3.1770 0.5465 REMARK 3 T TENSOR REMARK 3 T11: 0.0460 T22: 0.1436 REMARK 3 T33: 0.2936 T12: -0.0076 REMARK 3 T13: -0.0645 T23: 0.1221 REMARK 3 L TENSOR REMARK 3 L11: 1.4020 L22: 3.5587 REMARK 3 L33: 0.5981 L12: 0.9167 REMARK 3 L13: 0.0920 L23: 0.5466 REMARK 3 S TENSOR REMARK 3 S11: -0.1185 S12: -0.0236 S13: 0.2890 REMARK 3 S21: -0.2321 S22: 0.2798 S23: 0.7014 REMARK 3 S31: -0.0120 S32: -0.1400 S33: -0.1613 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 53 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5264 -1.7969 -3.9119 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.0741 REMARK 3 T33: 0.0988 T12: -0.0712 REMARK 3 T13: -0.1037 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 1.0366 L22: 3.8556 REMARK 3 L33: 1.0691 L12: 0.8026 REMARK 3 L13: -0.4090 L23: -1.1111 REMARK 3 S TENSOR REMARK 3 S11: -0.1963 S12: 0.1443 S13: 0.1091 REMARK 3 S21: -0.7617 S22: 0.3579 S23: 0.4868 REMARK 3 S31: 0.3169 S32: -0.1692 S33: -0.1616 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 141 B 199 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3512 -5.1669 10.9017 REMARK 3 T TENSOR REMARK 3 T11: 0.0466 T22: 0.0563 REMARK 3 T33: 0.0704 T12: 0.0097 REMARK 3 T13: -0.0001 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.8978 L22: 4.3115 REMARK 3 L33: 1.5138 L12: 0.3717 REMARK 3 L13: -0.0154 L23: -1.2327 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.0796 S13: -0.1065 REMARK 3 S21: 0.1993 S22: 0.0111 S23: 0.0046 REMARK 3 S31: 0.1332 S32: -0.0541 S33: -0.0217 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 200 B 361 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7218 -4.8548 0.1493 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.0451 REMARK 3 T33: 0.0695 T12: 0.0020 REMARK 3 T13: 0.0182 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.9738 L22: 3.8643 REMARK 3 L33: 1.7430 L12: 0.6752 REMARK 3 L13: -0.1390 L23: -1.1829 REMARK 3 S TENSOR REMARK 3 S11: -0.1191 S12: 0.0683 S13: -0.0818 REMARK 3 S21: -0.5684 S22: 0.1130 S23: -0.1490 REMARK 3 S31: 0.4172 S32: 0.0212 S33: 0.0062 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 362 B 375 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3363 2.4176 5.0357 REMARK 3 T TENSOR REMARK 3 T11: 0.0452 T22: 0.2831 REMARK 3 T33: 0.7808 T12: 0.0493 REMARK 3 T13: -0.0223 T23: 0.1697 REMARK 3 L TENSOR REMARK 3 L11: 18.1288 L22: 8.1821 REMARK 3 L33: 12.5865 L12: -2.5568 REMARK 3 L13: 10.9436 L23: 0.6043 REMARK 3 S TENSOR REMARK 3 S11: 0.2837 S12: -0.5074 S13: -1.2859 REMARK 3 S21: 0.3881 S22: 0.3198 S23: -1.2336 REMARK 3 S31: 0.5031 S32: -0.1291 S33: -0.6035 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 11 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9253 40.7667 42.6617 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1443 REMARK 3 T33: 0.1995 T12: 0.0822 REMARK 3 T13: 0.0451 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 1.1063 L22: 4.3941 REMARK 3 L33: 10.0287 L12: 0.8161 REMARK 3 L13: -0.2170 L23: 0.8947 REMARK 3 S TENSOR REMARK 3 S11: 0.0621 S12: -0.2458 S13: 0.4065 REMARK 3 S21: -0.1247 S22: -0.0278 S23: 0.0703 REMARK 3 S31: -1.0070 S32: -0.4069 S33: -0.0343 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 12 D 14 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5062 36.6553 30.4829 REMARK 3 T TENSOR REMARK 3 T11: 0.3339 T22: 0.3930 REMARK 3 T33: 0.2442 T12: 0.3301 REMARK 3 T13: 0.0209 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 2.9775 L22: 8.9379 REMARK 3 L33: 9.8458 L12: 4.1151 REMARK 3 L13: 2.5300 L23: 4.0582 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: -0.0356 S13: 0.7014 REMARK 3 S21: -0.5773 S22: -0.4302 S23: 0.9534 REMARK 3 S31: -1.3539 S32: -1.4900 S33: 0.3969 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 16 E 90 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1847 22.7702 39.4769 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.3581 REMARK 3 T33: 0.1427 T12: 0.2426 REMARK 3 T13: -0.1270 T23: -0.1538 REMARK 3 L TENSOR REMARK 3 L11: 1.6149 L22: 2.8769 REMARK 3 L33: 5.6126 L12: 0.3998 REMARK 3 L13: 0.4181 L23: 1.7914 REMARK 3 S TENSOR REMARK 3 S11: 0.2004 S12: -0.0617 S13: -0.0746 REMARK 3 S21: 0.4247 S22: 0.4492 S23: -0.5424 REMARK 3 S31: 0.9921 S32: 1.2789 S33: -0.6496 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 91 E 146 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2431 21.1248 39.6368 REMARK 3 T TENSOR REMARK 3 T11: 0.2574 T22: 0.0790 REMARK 3 T33: 0.0281 T12: 0.0062 REMARK 3 T13: -0.0415 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.3356 L22: 2.4083 REMARK 3 L33: 6.5698 L12: 0.4350 REMARK 3 L13: 0.3348 L23: 2.3777 REMARK 3 S TENSOR REMARK 3 S11: 0.1918 S12: -0.0743 S13: -0.0206 REMARK 3 S21: 0.6085 S22: -0.0051 S23: -0.1471 REMARK 3 S31: 1.2086 S32: -0.0825 S33: -0.1867 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 147 E 152 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5858 19.4220 19.2040 REMARK 3 T TENSOR REMARK 3 T11: 1.4037 T22: 1.0476 REMARK 3 T33: 0.8263 T12: 0.3268 REMARK 3 T13: 0.3328 T23: -0.1762 REMARK 3 L TENSOR REMARK 3 L11: 18.5269 L22: 16.2263 REMARK 3 L33: 35.6705 L12: 1.1013 REMARK 3 L13: -3.6054 L23: 23.5513 REMARK 3 S TENSOR REMARK 3 S11: -1.5015 S12: -0.1745 S13: -1.4017 REMARK 3 S21: 2.8490 S22: 1.5518 S23: -0.5135 REMARK 3 S31: 4.6895 S32: 2.0255 S33: -0.0503 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 153 E 216 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7667 22.1718 30.2672 REMARK 3 T TENSOR REMARK 3 T11: 0.1200 T22: 0.1471 REMARK 3 T33: 0.0325 T12: -0.0471 REMARK 3 T13: 0.0118 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.3663 L22: 2.7536 REMARK 3 L33: 7.5903 L12: 0.3716 REMARK 3 L13: 0.7057 L23: 3.5024 REMARK 3 S TENSOR REMARK 3 S11: 0.1773 S12: 0.0165 S13: 0.0303 REMARK 3 S21: 0.3000 S22: -0.3092 S23: 0.1442 REMARK 3 S31: 0.8254 S32: -0.7578 S33: 0.1320 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 217 E 359 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0289 14.1839 35.7901 REMARK 3 T TENSOR REMARK 3 T11: 0.6066 T22: 0.0238 REMARK 3 T33: 0.0501 T12: -0.0690 REMARK 3 T13: -0.0308 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.6871 L22: 1.8362 REMARK 3 L33: 10.3211 L12: 0.1725 REMARK 3 L13: 0.2045 L23: 2.5743 REMARK 3 S TENSOR REMARK 3 S11: 0.1384 S12: -0.0015 S13: -0.1989 REMARK 3 S21: 0.6781 S22: -0.1018 S23: -0.0712 REMARK 3 S31: 2.3692 S32: -0.3921 S33: -0.0365 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 360 E 375 REMARK 3 ORIGIN FOR THE GROUP (A): 40.9232 25.0112 32.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.3386 T22: 0.8800 REMARK 3 T33: 0.6602 T12: -0.1215 REMARK 3 T13: -0.1202 T23: -0.1483 REMARK 3 L TENSOR REMARK 3 L11: 16.5180 L22: 9.4153 REMARK 3 L33: 31.6370 L12: -0.5670 REMARK 3 L13: 9.1326 L23: 0.0505 REMARK 3 S TENSOR REMARK 3 S11: 0.9216 S12: 0.8618 S13: -2.1834 REMARK 3 S21: -0.7275 S22: 0.3755 S23: 0.7545 REMARK 3 S31: 2.7549 S32: -1.7951 S33: -1.2972 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : BENT GE(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP FROM CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1SHH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM K/NA TARTRATE, 20% PEG3350, PH REMARK 280 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 ARG A 16 REMARK 465 TRP B 147A REMARK 465 THR B 147B REMARK 465 ALA B 147C REMARK 465 ASN B 147D REMARK 465 VAL B 147E REMARK 465 GLY B 147F REMARK 465 GLY B 246 REMARK 465 GLU B 247 REMARK 465 ARG D 15 REMARK 465 TRP E 147A REMARK 465 THR E 147B REMARK 465 ALA E 147C REMARK 465 ASN E 147D REMARK 465 VAL E 147E REMARK 465 GLY E 147F REMARK 465 LYS E 147G REMARK 465 GLU E 247 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER F 42 REMARK 475 PHE F 43 REMARK 475 LEU F 44 REMARK 475 LEU F 45 REMARK 475 ARG F 46 REMARK 475 ASN F 47 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 7 -88.92 -130.29 REMARK 500 ILE A 14K -71.05 -82.73 REMARK 500 ASN B 60G 75.47 -157.96 REMARK 500 HIS B 71 -61.95 -132.82 REMARK 500 ASN B 78 -0.51 73.05 REMARK 500 ASN B 95 77.54 -102.02 REMARK 500 GLU B 97A -81.96 -119.81 REMARK 500 ASP B 186A -1.05 80.89 REMARK 500 ASN B 204B 10.42 -151.08 REMARK 500 LEU C 45 165.07 175.39 REMARK 500 ASN C 49 114.33 124.55 REMARK 500 TRP C 56 -86.84 90.91 REMARK 500 GLU D 1Q -139.14 -108.21 REMARK 500 PHE D 7 -83.66 -125.67 REMARK 500 ASN E 60G 78.99 -152.43 REMARK 500 HIS E 71 -58.63 -131.68 REMARK 500 GLU E 97A -73.69 -103.02 REMARK 500 ASN E 204B 12.45 -146.97 REMARK 500 THR F 34 71.45 -108.05 REMARK 500 ARG F 41 42.05 -80.22 REMARK 500 LEU F 45 136.29 163.82 REMARK 500 ASN F 49 62.92 175.35 REMARK 500 TRP F 56 -121.70 66.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG C 41 SER C 42 148.31 REMARK 500 PHE C 43 LEU C 44 -148.77 REMARK 500 LYS C 51 TYR C 52 148.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 2 O REMARK 620 2 ARG B 221A O 106.3 REMARK 620 3 LYS B 224 O 158.6 94.8 REMARK 620 4 HOH B 278 O 84.2 88.7 92.5 REMARK 620 5 HOH B 515 O 90.9 160.6 67.7 84.1 REMARK 620 6 HOH B 520 O 95.3 97.8 85.6 173.3 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG E 221A O REMARK 620 2 LYS E 224 O 96.2 REMARK 620 3 HOH E 508 O 95.8 79.9 REMARK 620 4 HOH E 510 O 162.3 68.6 90.6 REMARK 620 5 HOH E 513 O 103.1 160.5 96.2 92.5 REMARK 620 6 HOH E 597 O 92.1 97.3 171.9 81.3 84.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SHH RELATED DB: PDB REMARK 900 SLOW FORM OF THROMBIN BOUND WITH PPACK DBREF 3LU9 A 1R 16 UNP P00734 THRB_HUMAN 318 363 DBREF 3LU9 B 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 3LU9 C 33 57 UNP P25116 PAR1_HUMAN 33 57 DBREF 3LU9 D 1R 15 UNP P00734 THRB_HUMAN 318 363 DBREF 3LU9 E 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 3LU9 F 33 57 UNP P25116 PAR1_HUMAN 33 57 SEQADV 3LU9 ALA B 195 UNP P00734 SER 568 ENGINEERED MUTATION SEQADV 3LU9 ALA E 195 UNP P00734 SER 568 ENGINEERED MUTATION SEQRES 1 A 46 SER GLU TYR GLN THR PHE PHE ASN PRO ARG THR PHE GLY SEQRES 2 A 46 SER GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU SEQRES 3 A 46 LYS LYS SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU SEQRES 4 A 46 GLU SER TYR ILE ASP GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 B 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 B 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP ALA GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 C 25 ALA THR ASN ALA THR LEU ASP PRO ARG SER PHE LEU LEU SEQRES 2 C 25 ARG ASN PRO ASN ASP LYS TYR GLU PRO PHE TRP GLU SEQRES 1 D 46 SER GLU TYR GLN THR PHE PHE ASN PRO ARG THR PHE GLY SEQRES 2 D 46 SER GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU SEQRES 3 D 46 LYS LYS SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU SEQRES 4 D 46 GLU SER TYR ILE ASP GLY ARG SEQRES 1 E 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 E 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 E 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 E 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 E 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 E 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 E 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 E 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 E 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 E 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 E 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 E 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 E 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 E 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 E 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 E 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP ALA GLY GLY PRO SEQRES 17 E 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 E 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 E 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 E 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 F 25 ALA THR ASN ALA THR LEU ASP PRO ARG SER PHE LEU LEU SEQRES 2 F 25 ARG ASN PRO ASN ASP LYS TYR GLU PRO PHE TRP GLU MODRES 3LU9 ASN E 60G ASN GLYCOSYLATION SITE MODRES 3LU9 ASN B 60G ASN GLYCOSYLATION SITE HET NAG B 400 14 HET NA B 401 1 HET GOL B 402 6 HET NAG E 400 14 HET NA E 401 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 NAG 2(C8 H15 N O6) FORMUL 8 NA 2(NA 1+) FORMUL 9 GOL C3 H8 O3 FORMUL 12 HOH *698(H2 O) HELIX 1 1 ASN A 1K GLY A 1F 1 6 HELIX 2 2 PHE A 7 SER A 11 5 5 HELIX 3 3 THR A 14B ASP A 14L 1 11 HELIX 4 4 ALA B 55 CYS B 58 5 4 HELIX 5 5 PRO B 60B ASP B 60E 5 4 HELIX 6 6 THR B 60I ASP B 63 5 4 HELIX 7 7 ASP B 125 LEU B 130 1 9 HELIX 8 8 GLU B 164 SER B 171 1 8 HELIX 9 9 LEU B 234 PHE B 245 1 12 HELIX 10 10 ASN D 1K GLY D 1F 1 6 HELIX 11 11 PHE D 7 SER D 11 5 5 HELIX 12 12 THR D 14B ASP D 14L 1 11 HELIX 13 13 ALA E 55 CYS E 58 5 4 HELIX 14 14 PRO E 60B ASP E 60E 5 4 HELIX 15 15 THR E 60I ASN E 62 5 3 HELIX 16 16 ASP E 125 LEU E 130 1 9 HELIX 17 17 GLU E 164 SER E 171 1 8 HELIX 18 18 LEU E 234 GLY E 246 1 13 HELIX 19 19 THR F 34 LEU F 38 5 5 SHEET 1 A 7 SER B 20 ASP B 21 0 SHEET 2 A 7 GLN B 156 PRO B 161 -1 O VAL B 157 N SER B 20 SHEET 3 A 7 LYS B 135 GLY B 140 -1 N VAL B 138 O VAL B 158 SHEET 4 A 7 PRO B 198 LYS B 202 -1 O VAL B 200 N ARG B 137 SHEET 5 A 7 TRP B 207 GLY B 216 -1 O TYR B 208 N MET B 201 SHEET 6 A 7 GLY B 226 HIS B 230 -1 O PHE B 227 N TRP B 215 SHEET 7 A 7 MET B 180 ALA B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 B 6 SER B 20 ASP B 21 0 SHEET 2 B 6 GLN B 156 PRO B 161 -1 O VAL B 157 N SER B 20 SHEET 3 B 6 LYS B 135 GLY B 140 -1 N VAL B 138 O VAL B 158 SHEET 4 B 6 PRO B 198 LYS B 202 -1 O VAL B 200 N ARG B 137 SHEET 5 B 6 TRP B 207 GLY B 216 -1 O TYR B 208 N MET B 201 SHEET 6 B 6 ASP C 39 PRO C 40 -1 O ASP C 39 N GLY B 216 SHEET 1 C 7 GLN B 30 ARG B 35 0 SHEET 2 C 7 GLU B 39 LEU B 46 -1 O GLU B 39 N ARG B 35 SHEET 3 C 7 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 4 C 7 ALA B 104 LEU B 108 -1 O MET B 106 N VAL B 52 SHEET 5 C 7 LYS B 81 ILE B 90 -1 N GLU B 86 O LYS B 107 SHEET 6 C 7 LEU B 65 ILE B 68 -1 N ILE B 68 O LYS B 81 SHEET 7 C 7 GLN B 30 ARG B 35 -1 N MET B 32 O ARG B 67 SHEET 1 D 2 LEU B 60 TYR B 60A 0 SHEET 2 D 2 LYS B 60F ASN B 60G-1 O LYS B 60F N TYR B 60A SHEET 1 E 7 SER E 20 ASP E 21 0 SHEET 2 E 7 GLN E 156 PRO E 161 -1 O VAL E 157 N SER E 20 SHEET 3 E 7 LYS E 135 GLY E 140 -1 N VAL E 138 O VAL E 158 SHEET 4 E 7 PRO E 198 LYS E 202 -1 O VAL E 200 N ARG E 137 SHEET 5 E 7 TRP E 207 GLY E 216 -1 O TYR E 208 N MET E 201 SHEET 6 E 7 GLY E 226 HIS E 230 -1 O PHE E 227 N TRP E 215 SHEET 7 E 7 MET E 180 ALA E 183 -1 N PHE E 181 O TYR E 228 SHEET 1 F 6 SER E 20 ASP E 21 0 SHEET 2 F 6 GLN E 156 PRO E 161 -1 O VAL E 157 N SER E 20 SHEET 3 F 6 LYS E 135 GLY E 140 -1 N VAL E 138 O VAL E 158 SHEET 4 F 6 PRO E 198 LYS E 202 -1 O VAL E 200 N ARG E 137 SHEET 5 F 6 TRP E 207 GLY E 216 -1 O TYR E 208 N MET E 201 SHEET 6 F 6 ASP F 39 PRO F 40 -1 O ASP F 39 N GLY E 216 SHEET 1 G 7 GLN E 30 ARG E 35 0 SHEET 2 G 7 GLU E 39 LEU E 46 -1 O LEU E 41 N LEU E 33 SHEET 3 G 7 TRP E 51 THR E 54 -1 O LEU E 53 N SER E 45 SHEET 4 G 7 ALA E 104 LEU E 108 -1 O MET E 106 N VAL E 52 SHEET 5 G 7 LYS E 81 ILE E 90 -1 N TYR E 89 O LEU E 105 SHEET 6 G 7 LEU E 64 ILE E 68 -1 N ILE E 68 O LYS E 81 SHEET 7 G 7 GLN E 30 ARG E 35 -1 N PHE E 34 O LEU E 65 SHEET 1 H 2 LEU E 60 TYR E 60A 0 SHEET 2 H 2 LYS E 60F ASN E 60G-1 O LYS E 60F N TYR E 60A SSBOND 1 CYS A 1 CYS B 122 1555 1555 2.04 SSBOND 2 CYS B 42 CYS B 58 1555 1555 2.02 SSBOND 3 CYS B 168 CYS B 182 1555 1555 2.05 SSBOND 4 CYS B 191 CYS B 220 1555 1555 2.05 SSBOND 5 CYS D 1 CYS E 122 1555 1555 2.06 SSBOND 6 CYS E 42 CYS E 58 1555 1555 2.02 SSBOND 7 CYS E 168 CYS E 182 1555 1555 2.04 SSBOND 8 CYS E 191 CYS E 220 1555 1555 2.04 LINK ND2 ASN B 60G C1 NAG B 400 1555 1555 1.45 LINK ND2 ASN E 60G C1 NAG E 400 1555 1555 1.45 LINK O HOH B 2 NA NA B 401 1555 1555 2.45 LINK O ARG B 221A NA NA B 401 1555 1555 2.33 LINK O LYS B 224 NA NA B 401 1555 1555 2.40 LINK O HOH B 278 NA NA B 401 1555 1555 2.74 LINK NA NA B 401 O HOH B 515 1555 1555 2.52 LINK NA NA B 401 O HOH B 520 1555 1555 2.33 LINK O ARG E 221A NA NA E 401 1555 1555 2.34 LINK O LYS E 224 NA NA E 401 1555 1555 2.36 LINK NA NA E 401 O HOH E 508 1555 1555 2.46 LINK NA NA E 401 O HOH E 510 1555 1555 2.52 LINK NA NA E 401 O HOH E 513 1555 1555 2.40 LINK NA NA E 401 O HOH E 597 1555 1555 2.56 CISPEP 1 SER B 36A PRO B 37 0 -2.55 CISPEP 2 SER E 36A PRO E 37 0 -10.25 CRYST1 46.334 50.171 85.502 76.39 83.93 73.74 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021582 -0.006297 -0.000962 0.00000 SCALE2 0.000000 0.020763 -0.004580 0.00000 SCALE3 0.000000 0.000000 0.012044 0.00000