HEADER OXIDOREDUCTASE 25-FEB-10 3LXD TITLE CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE ARR FROM NOVOSPHINGOBIUM TITLE 2 AROMATICIVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAD-DEPENDENT PYRIDINE NUCLEOTIDE-DISULPHIDE COMPND 3 OXIDOREDUCTASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: FERREDOXIN REDUCTASE ARR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 STRAIN: DSM 12444; SOURCE 5 GENE: SARO_0216; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLUTATHIONE REDUCTASE (GR)-LIKE ONFR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.YANG,S.G.BELL,H.WANG,M.BARTLAM,L.L.WONG,Z.RAO REVDAT 4 01-NOV-23 3LXD 1 REMARK REVDAT 3 12-FEB-14 3LXD 1 JRNL VERSN REVDAT 2 07-JUL-10 3LXD 1 JRNL REVDAT 1 23-JUN-10 3LXD 0 JRNL AUTH W.YANG,S.G.BELL,H.WANG,W.ZHOU,N.HOSKINS,A.DALE,M.BARTLAM, JRNL AUTH 2 L.L.WONG,Z.RAO JRNL TITL MOLECULAR CHARACTERIZATION OF A CLASS I P450 ELECTRON JRNL TITL 2 TRANSFER SYSTEM FROM NOVOSPHINGOBIUM AROMATICIVORANS JRNL TITL 3 DSM12444 JRNL REF J.BIOL.CHEM. V. 285 27372 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20576606 JRNL DOI 10.1074/JBC.M110.118349 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 401 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.26000 REMARK 3 B22 (A**2) : -1.26000 REMARK 3 B33 (A**2) : 2.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.473 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.277 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.611 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3127 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4255 ; 1.125 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 408 ; 4.980 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;32.208 ;24.127 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;18.694 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 485 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2359 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2016 ; 0.313 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3205 ; 0.595 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1111 ; 0.797 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1050 ; 1.437 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18500 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Q1R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 17% PEG 8000, 0.1M REMARK 280 POTASSIUM PHOSPHATE, PH 7.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.10850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.03550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.03550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.16275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.03550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.03550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.05425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.03550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.03550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.16275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.03550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.03550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 13.05425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.10850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 632 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 796 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 VAL A 5 REMARK 465 GLN A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 376 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 55 -121.92 -131.08 REMARK 500 ASP A 218 -72.10 -93.99 REMARK 500 GLU A 302 78.87 -117.96 REMARK 500 TYR A 336 -129.08 52.93 REMARK 500 MET A 381 58.46 -146.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LXF RELATED DB: PDB REMARK 900 ASSOCIATE [2FE-2S] FERREDOXIN ARX FROM NOVOSPHINGOBIUM REMARK 900 AROMATICIVORANS REMARK 900 RELATED ID: 3LXH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NATIVE CYTOCHROME P450 CYP101D1 REMARK 900 RELATED ID: 3LXI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CAMPHOR-BOUND CYP101D1 DBREF 3LXD A 1 415 UNP Q2GBV9 Q2GBV9_NOVAD 1 415 SEQRES 1 A 415 MET ALA SER GLU VAL GLN ALA GLU ARG ALA ASP VAL VAL SEQRES 2 A 415 ILE VAL GLY ALA GLY HIS GLY GLY ALA GLN ALA ALA ILE SEQRES 3 A 415 ALA LEU ARG GLN ASN GLY PHE GLU GLY ARG VAL LEU VAL SEQRES 4 A 415 ILE GLY ARG GLU PRO GLU ILE PRO TYR GLU ARG PRO PRO SEQRES 5 A 415 LEU SER LYS GLU TYR LEU ALA ARG GLU LYS THR PHE GLU SEQRES 6 A 415 ARG ILE CYS ILE ARG PRO ALA GLN PHE TRP GLU ASP LYS SEQRES 7 A 415 ALA VAL GLU MET LYS LEU GLY ALA GLU VAL VAL SER LEU SEQRES 8 A 415 ASP PRO ALA ALA HIS THR VAL LYS LEU GLY ASP GLY SER SEQRES 9 A 415 ALA ILE GLU TYR GLY LYS LEU ILE TRP ALA THR GLY GLY SEQRES 10 A 415 ASP PRO ARG ARG LEU SER CYS VAL GLY ALA ASP LEU ALA SEQRES 11 A 415 GLY VAL HIS ALA VAL ARG THR LYS GLU ASP ALA ASP ARG SEQRES 12 A 415 LEU MET ALA GLU LEU ASP ALA GLY ALA LYS ASN ALA VAL SEQRES 13 A 415 VAL ILE GLY GLY GLY TYR ILE GLY LEU GLU ALA ALA ALA SEQRES 14 A 415 VAL LEU THR LYS PHE GLY VAL ASN VAL THR LEU LEU GLU SEQRES 15 A 415 ALA LEU PRO ARG VAL LEU ALA ARG VAL ALA GLY GLU ALA SEQRES 16 A 415 LEU SER GLU PHE TYR GLN ALA GLU HIS ARG ALA HIS GLY SEQRES 17 A 415 VAL ASP LEU ARG THR GLY ALA ALA MET ASP CYS ILE GLU SEQRES 18 A 415 GLY ASP GLY THR LYS VAL THR GLY VAL ARG MET GLN ASP SEQRES 19 A 415 GLY SER VAL ILE PRO ALA ASP ILE VAL ILE VAL GLY ILE SEQRES 20 A 415 GLY ILE VAL PRO CYS VAL GLY ALA LEU ILE SER ALA GLY SEQRES 21 A 415 ALA SER GLY GLY ASN GLY VAL ASP VAL ASP GLU PHE CYS SEQRES 22 A 415 ARG THR SER LEU THR ASP VAL TYR ALA ILE GLY ASP CYS SEQRES 23 A 415 ALA ALA HIS ALA ASN ASP PHE ALA ASP GLY ALA VAL ILE SEQRES 24 A 415 ARG LEU GLU SER VAL GLN ASN ALA ASN ASP MET ALA THR SEQRES 25 A 415 ALA ALA ALA LYS ASP ILE CYS GLY ALA PRO VAL PRO TYR SEQRES 26 A 415 LYS ALA THR PRO TRP PHE TRP SER ASN GLN TYR ASP LEU SEQRES 27 A 415 LYS LEU GLN THR VAL GLY LEU SER THR GLY HIS ASP ASN SEQRES 28 A 415 ALA VAL LEU ARG GLY ASP PRO ALA THR ARG SER PHE SER SEQRES 29 A 415 VAL VAL TYR LEU LYS GLY GLY LYS VAL VAL ALA LEU ASP SEQRES 30 A 415 CYS VAL ASN MET VAL LYS ASP TYR VAL GLN GLY LYS LYS SEQRES 31 A 415 LEU VAL GLU ALA ARG ALA GLN ILE ALA PRO GLU GLN LEU SEQRES 32 A 415 ALA ASP ALA GLY VAL PRO LEU LYS GLU MET LEU ALA HET FAD A 416 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *401(H2 O) HELIX 1 1 GLY A 18 ASN A 31 1 14 HELIX 2 2 ARG A 50 LYS A 55 5 6 HELIX 3 3 PHE A 64 CYS A 68 5 5 HELIX 4 4 PRO A 71 LYS A 78 1 8 HELIX 5 5 THR A 137 ALA A 150 1 14 HELIX 6 6 GLY A 161 PHE A 174 1 14 HELIX 7 7 GLY A 193 HIS A 207 1 15 HELIX 8 8 VAL A 253 ALA A 259 1 7 HELIX 9 9 ASP A 292 ASP A 295 5 4 HELIX 10 10 SER A 303 CYS A 319 1 17 HELIX 11 11 PRO A 358 ARG A 361 5 4 HELIX 12 12 MET A 381 ARG A 395 1 15 HELIX 13 13 ALA A 399 ALA A 404 1 6 HELIX 14 14 PRO A 409 LEU A 414 5 6 SHEET 1 A 6 VAL A 80 LEU A 84 0 SHEET 2 A 6 VAL A 37 GLY A 41 1 N VAL A 39 O LYS A 83 SHEET 3 A 6 ARG A 9 VAL A 15 1 N ILE A 14 O LEU A 38 SHEET 4 A 6 ALA A 105 TRP A 113 1 O ILE A 112 N VAL A 15 SHEET 5 A 6 THR A 97 LEU A 100 -1 N VAL A 98 O ILE A 106 SHEET 6 A 6 VAL A 88 ASP A 92 -1 N SER A 90 O LYS A 99 SHEET 1 B 5 VAL A 80 LEU A 84 0 SHEET 2 B 5 VAL A 37 GLY A 41 1 N VAL A 39 O LYS A 83 SHEET 3 B 5 ARG A 9 VAL A 15 1 N ILE A 14 O LEU A 38 SHEET 4 B 5 ALA A 105 TRP A 113 1 O ILE A 112 N VAL A 15 SHEET 5 B 5 VAL A 280 ALA A 282 1 O TYR A 281 N LEU A 111 SHEET 1 C 2 GLY A 117 ASP A 118 0 SHEET 2 C 2 VAL A 250 PRO A 251 -1 O VAL A 250 N ASP A 118 SHEET 1 D 5 VAL A 132 HIS A 133 0 SHEET 2 D 5 ILE A 242 VAL A 245 1 O VAL A 243 N HIS A 133 SHEET 3 D 5 ASN A 154 ILE A 158 1 N ILE A 158 O ILE A 244 SHEET 4 D 5 ASN A 177 GLU A 182 1 O THR A 179 N VAL A 157 SHEET 5 D 5 ASP A 210 THR A 213 1 O ARG A 212 N GLU A 182 SHEET 1 E 3 MET A 217 GLY A 222 0 SHEET 2 E 3 VAL A 227 MET A 232 -1 O ARG A 231 N CYS A 219 SHEET 3 E 3 VAL A 237 PRO A 239 -1 O ILE A 238 N VAL A 230 SHEET 1 F 3 VAL A 267 ASP A 268 0 SHEET 2 F 3 ALA A 287 ALA A 290 1 O ALA A 288 N VAL A 267 SHEET 3 F 3 VAL A 298 ILE A 299 -1 O ILE A 299 N HIS A 289 SHEET 1 G 5 TRP A 330 GLN A 335 0 SHEET 2 G 5 LEU A 338 GLY A 344 -1 O THR A 342 N PHE A 331 SHEET 3 G 5 LYS A 372 VAL A 379 -1 O CYS A 378 N GLN A 341 SHEET 4 G 5 SER A 362 LYS A 369 -1 N TYR A 367 O ALA A 375 SHEET 5 G 5 ASN A 351 ASP A 357 -1 N ARG A 355 O SER A 364 SSBOND 1 CYS A 124 CYS A 219 1555 1555 2.03 CISPEP 1 ALA A 130 GLY A 131 0 -16.73 CISPEP 2 ASP A 234 GLY A 235 0 -14.03 SITE 1 AC1 34 VAL A 15 GLY A 16 GLY A 18 HIS A 19 SITE 2 AC1 34 GLY A 20 ILE A 40 ARG A 42 GLU A 43 SITE 3 AC1 34 ARG A 50 PRO A 51 SER A 54 LYS A 55 SITE 4 AC1 34 GLU A 87 VAL A 88 ALA A 114 THR A 115 SITE 5 AC1 34 GLY A 116 VAL A 135 GLY A 284 ASP A 285 SITE 6 AC1 34 GLU A 302 SER A 303 VAL A 304 ALA A 307 SITE 7 AC1 34 PHE A 331 TRP A 332 HOH A 450 HOH A 454 SITE 8 AC1 34 HOH A 460 HOH A 474 HOH A 478 HOH A 493 SITE 9 AC1 34 HOH A 530 HOH A 573 CRYST1 140.071 140.071 52.217 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007139 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019151 0.00000