HEADER HYDROLASE 25-FEB-10 3LY0 TITLE CRYSTAL STRUCTURE OF METALLO PEPTIDASE FROM RHODOBACTER SPHAEROIDES TITLE 2 LIGANDED WITH PHOSPHINATE MIMIC OF DIPEPTIDE L-ALA-D-ALA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDASE AC. METALLO PEPTIDASE. MEROPS FAMILY M19; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 272943; SOURCE 4 STRAIN: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158; SOURCE 5 GENE: RHOS4_24130, RSP_0802; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NYSGRC, TARGET 9523C, METALLO PEPTIDASE, KEYWDS 2 PHOSPHINATE INHIBITOR, PSI-2, PROTEIN STRUCTURE INITIATIVE, NEW YORK KEYWDS 3 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,J.CUMMINGS,F.M.RAUSHEL,S.K.BURLEY,S.C.ALMO, AUTHOR 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 06-SEP-23 3LY0 1 REMARK REVDAT 2 10-FEB-21 3LY0 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 2 1 LINK REVDAT 1 09-MAR-10 3LY0 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,J.CUMMINGS,F.M.RAUSHEL,J.M.SAUDER, JRNL AUTH 2 S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF METALLO PEPTIDASE FROM RHODOBACTER JRNL TITL 2 SPHAEROIDES LIGANDED WITH PHOSPHINATE MIMIC OF DIPEPTIDE JRNL TITL 3 L-ALA-D-ALA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 123178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 6191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1380 - 4.3453 0.90 3690 180 0.1690 0.1685 REMARK 3 2 4.3453 - 3.4502 0.95 3938 211 0.1465 0.1681 REMARK 3 3 3.4502 - 3.0144 0.96 3892 241 0.1624 0.1841 REMARK 3 4 3.0144 - 2.7389 0.96 3948 212 0.1767 0.1947 REMARK 3 5 2.7389 - 2.5427 0.96 3951 200 0.1676 0.2015 REMARK 3 6 2.5427 - 2.3928 0.96 3920 207 0.1668 0.1961 REMARK 3 7 2.3928 - 2.2730 0.96 3967 194 0.1619 0.1945 REMARK 3 8 2.2730 - 2.1741 0.96 3983 211 0.1545 0.1680 REMARK 3 9 2.1741 - 2.0904 0.97 3949 200 0.1518 0.1759 REMARK 3 10 2.0904 - 2.0183 0.97 3997 199 0.1534 0.1763 REMARK 3 11 2.0183 - 1.9552 0.96 4005 198 0.1528 0.1733 REMARK 3 12 1.9552 - 1.8993 0.97 3970 200 0.1523 0.1990 REMARK 3 13 1.8993 - 1.8493 0.96 3935 197 0.1582 0.1836 REMARK 3 14 1.8493 - 1.8042 0.96 3929 212 0.1494 0.1870 REMARK 3 15 1.8042 - 1.7632 0.96 3964 219 0.1556 0.1825 REMARK 3 16 1.7632 - 1.7257 0.96 3861 201 0.1527 0.1853 REMARK 3 17 1.7257 - 1.6911 0.96 3954 224 0.1581 0.1883 REMARK 3 18 1.6911 - 1.6592 0.96 3925 196 0.1528 0.1985 REMARK 3 19 1.6592 - 1.6296 0.95 3918 194 0.1556 0.1951 REMARK 3 20 1.6296 - 1.6020 0.95 3896 219 0.1631 0.1966 REMARK 3 21 1.6020 - 1.5761 0.95 3855 242 0.1742 0.2035 REMARK 3 22 1.5761 - 1.5519 0.94 3902 200 0.1707 0.1983 REMARK 3 23 1.5519 - 1.5291 0.95 3889 200 0.1835 0.1903 REMARK 3 24 1.5291 - 1.5075 0.94 3825 217 0.1849 0.1978 REMARK 3 25 1.5075 - 1.4871 0.94 3876 232 0.1971 0.2205 REMARK 3 26 1.4871 - 1.4678 0.94 3877 178 0.2099 0.2262 REMARK 3 27 1.4678 - 1.4495 0.94 3833 230 0.2219 0.2375 REMARK 3 28 1.4495 - 1.4320 0.94 3860 189 0.2367 0.2489 REMARK 3 29 1.4320 - 1.4154 0.93 3768 209 0.2489 0.2760 REMARK 3 30 1.4154 - 1.3995 0.89 3710 179 0.2617 0.2726 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.14 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92670 REMARK 3 B22 (A**2) : 2.14840 REMARK 3 B33 (A**2) : -3.07510 REMARK 3 B12 (A**2) : -1.48240 REMARK 3 B13 (A**2) : -1.15290 REMARK 3 B23 (A**2) : 2.34020 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5604 REMARK 3 ANGLE : 1.112 7599 REMARK 3 CHIRALITY : 0.076 808 REMARK 3 PLANARITY : 0.005 1013 REMARK 3 DIHEDRAL : 16.362 2075 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057871. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 123178 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3FDG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1M TRIC-HCL, 0.2M REMARK 280 MAGNESIUM CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 SER A 2 REMARK 465 GLY A 354 REMARK 465 GLU A 355 REMARK 465 GLY A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 SER B 2 REMARK 465 GLU B 355 REMARK 465 GLY B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 11 121.03 -170.90 REMARK 500 ARG A 166 140.54 -174.57 REMARK 500 HIS A 210 -24.49 89.17 REMARK 500 HIS A 231 73.66 -150.46 REMARK 500 ASN A 233 -165.32 -113.91 REMARK 500 ALA A 315 -44.54 72.19 REMARK 500 HIS A 342 -31.53 -156.51 REMARK 500 ARG B 166 139.87 -176.63 REMARK 500 HIS B 210 -25.25 88.51 REMARK 500 HIS B 231 74.58 -150.62 REMARK 500 ASN B 233 -164.47 -111.21 REMARK 500 ALA B 315 -44.58 71.44 REMARK 500 HIS B 342 -31.40 -155.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 364 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 11 NE2 REMARK 620 2 ASP A 13 OD2 100.2 REMARK 620 3 ASP A 13 OD1 103.8 58.3 REMARK 620 4 GLU A 137 OE1 88.2 158.2 100.2 REMARK 620 5 LY0 A 363 O31 93.9 87.4 143.4 112.2 REMARK 620 6 LY0 A 363 N1 170.4 87.1 85.3 87.3 80.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 365 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 137 OE2 REMARK 620 2 HIS A 210 NE2 87.5 REMARK 620 3 HIS A 231 NE2 95.8 108.3 REMARK 620 4 LY0 A 363 O32 95.1 86.1 162.3 REMARK 620 5 LY0 A 363 O62 172.2 93.4 91.2 77.3 REMARK 620 6 LY0 A 363 O31 94.8 152.1 99.1 66.0 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 364 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 11 NE2 REMARK 620 2 ASP B 13 OD2 98.0 REMARK 620 3 ASP B 13 OD1 103.2 58.1 REMARK 620 4 GLU B 137 OE1 90.5 157.8 100.1 REMARK 620 5 LY0 B 363 O31 93.1 87.8 143.5 112.3 REMARK 620 6 LY0 B 363 N1 170.8 88.2 85.9 86.2 80.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 365 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 137 OE2 REMARK 620 2 HIS B 210 NE2 88.4 REMARK 620 3 HIS B 231 NE2 97.1 108.0 REMARK 620 4 LY0 B 363 O62 173.2 92.1 89.3 REMARK 620 5 LY0 B 363 O32 93.7 87.0 161.7 79.5 REMARK 620 6 LY0 B 363 O31 94.4 153.1 98.3 82.1 66.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LY0 A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LY0 B 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 365 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9523C RELATED DB: TARGETDB DBREF 3LY0 A 4 354 UNP Q3IZQ3 Q3IZQ3_RHOS4 4 354 DBREF 3LY0 B 4 354 UNP Q3IZQ3 Q3IZQ3_RHOS4 4 354 SEQADV 3LY0 MET A -1 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 SER A 0 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 LEU A 1 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 SER A 2 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 ASP A 3 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 THR A 352 UNP Q3IZQ3 SER 352 CONFLICT SEQADV 3LY0 GLU A 355 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 GLY A 356 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS A 357 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS A 358 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS A 359 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS A 360 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS A 361 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS A 362 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 MET B -1 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 SER B 0 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 LEU B 1 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 SER B 2 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 ASP B 3 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 THR B 352 UNP Q3IZQ3 SER 352 CONFLICT SEQADV 3LY0 GLU B 355 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 GLY B 356 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS B 357 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS B 358 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS B 359 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS B 360 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS B 361 UNP Q3IZQ3 EXPRESSION TAG SEQADV 3LY0 HIS B 362 UNP Q3IZQ3 EXPRESSION TAG SEQRES 1 A 364 MET SER LEU SER ASP THR ILE PRO VAL PHE ASP GLY HIS SEQRES 2 A 364 ASN ASP PHE LEU LEU ARG LEU LEU ARG ASN PRO ALA ASN SEQRES 3 A 364 ARG GLU THR ILE TRP LEU LYS GLY ASP GLY THR GLY HIS SEQRES 4 A 364 LEU ASP LEU PRO ARG MET LYS GLU GLY GLY PHE ALA GLY SEQRES 5 A 364 GLY PHE PHE ALA ILE TYR VAL PRO SER PRO GLN ALA HIS SEQRES 6 A 364 ASP ALA ALA HIS PHE GLU ALA MET MET ASP ALA PRO PRO SEQRES 7 A 364 PHE GLU LEU PRO LEU PRO PRO MET ILE ARG ALA GLU GLN SEQRES 8 A 364 ALA GLN PRO VAL ALA LEU ALA MET ALA GLY HIS LEU LEU SEQRES 9 A 364 TRP MET GLU ARG ALA ALA ARG GLY ARG PHE LYS VAL CYS SEQRES 10 A 364 ARG THR ALA ALA GLU VAL ARG SER CYS HIS ALA ASP GLY SEQRES 11 A 364 ILE VAL SER GLY ILE MET HIS MET GLU GLY ALA GLU ALA SEQRES 12 A 364 ILE GLY ALA ASP LEU ASP ALA LEU HIS LEU PHE HIS SER SEQRES 13 A 364 LEU GLY LEU ARG SER LEU GLY PRO VAL TRP SER ARG PRO SEQRES 14 A 364 THR VAL PHE GLY HIS GLY VAL PRO PHE ARG PHE PRO GLY SEQRES 15 A 364 SER PRO ASP THR GLY GLU GLY LEU THR GLU ALA GLY ARG SEQRES 16 A 364 ARG LEU VAL ALA GLU CYS ASN ARG LEU LYS ILE MET LEU SEQRES 17 A 364 ASP LEU SER HIS LEU ASN GLU LYS GLY PHE ASP ASP VAL SEQRES 18 A 364 ALA ARG LEU SER ASP ALA PRO LEU VAL ALA THR HIS SER SEQRES 19 A 364 ASN ALA HIS ALA VAL THR PRO SER THR ARG ASN LEU THR SEQRES 20 A 364 ASP ARG GLN LEU ALA MET ILE ARG GLU SER ARG GLY MET SEQRES 21 A 364 VAL GLY LEU ASN PHE ALA THR SER PHE LEU ARG GLU ASP SEQRES 22 A 364 GLY ARG ARG SER ALA GLU MET GLY TRP GLU PRO VAL LEU SEQRES 23 A 364 ARG HIS LEU ASP HIS LEU ILE ASP ARG LEU GLY GLU ASP SEQRES 24 A 364 HIS VAL GLY MET GLY SER ASP PHE ASP GLY ALA THR ILE SEQRES 25 A 364 PRO GLN GLY ILE ALA ASP VAL THR GLY LEU PRO ALA LEU SEQRES 26 A 364 GLN ALA ALA MET ARG ALA HIS GLY TYR ASP GLU PRO LEU SEQRES 27 A 364 MET ARG LYS LEU CYS HIS GLU ASN TRP TYR GLY LEU LEU SEQRES 28 A 364 GLU ARG THR TRP GLY GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 364 MET SER LEU SER ASP THR ILE PRO VAL PHE ASP GLY HIS SEQRES 2 B 364 ASN ASP PHE LEU LEU ARG LEU LEU ARG ASN PRO ALA ASN SEQRES 3 B 364 ARG GLU THR ILE TRP LEU LYS GLY ASP GLY THR GLY HIS SEQRES 4 B 364 LEU ASP LEU PRO ARG MET LYS GLU GLY GLY PHE ALA GLY SEQRES 5 B 364 GLY PHE PHE ALA ILE TYR VAL PRO SER PRO GLN ALA HIS SEQRES 6 B 364 ASP ALA ALA HIS PHE GLU ALA MET MET ASP ALA PRO PRO SEQRES 7 B 364 PHE GLU LEU PRO LEU PRO PRO MET ILE ARG ALA GLU GLN SEQRES 8 B 364 ALA GLN PRO VAL ALA LEU ALA MET ALA GLY HIS LEU LEU SEQRES 9 B 364 TRP MET GLU ARG ALA ALA ARG GLY ARG PHE LYS VAL CYS SEQRES 10 B 364 ARG THR ALA ALA GLU VAL ARG SER CYS HIS ALA ASP GLY SEQRES 11 B 364 ILE VAL SER GLY ILE MET HIS MET GLU GLY ALA GLU ALA SEQRES 12 B 364 ILE GLY ALA ASP LEU ASP ALA LEU HIS LEU PHE HIS SER SEQRES 13 B 364 LEU GLY LEU ARG SER LEU GLY PRO VAL TRP SER ARG PRO SEQRES 14 B 364 THR VAL PHE GLY HIS GLY VAL PRO PHE ARG PHE PRO GLY SEQRES 15 B 364 SER PRO ASP THR GLY GLU GLY LEU THR GLU ALA GLY ARG SEQRES 16 B 364 ARG LEU VAL ALA GLU CYS ASN ARG LEU LYS ILE MET LEU SEQRES 17 B 364 ASP LEU SER HIS LEU ASN GLU LYS GLY PHE ASP ASP VAL SEQRES 18 B 364 ALA ARG LEU SER ASP ALA PRO LEU VAL ALA THR HIS SER SEQRES 19 B 364 ASN ALA HIS ALA VAL THR PRO SER THR ARG ASN LEU THR SEQRES 20 B 364 ASP ARG GLN LEU ALA MET ILE ARG GLU SER ARG GLY MET SEQRES 21 B 364 VAL GLY LEU ASN PHE ALA THR SER PHE LEU ARG GLU ASP SEQRES 22 B 364 GLY ARG ARG SER ALA GLU MET GLY TRP GLU PRO VAL LEU SEQRES 23 B 364 ARG HIS LEU ASP HIS LEU ILE ASP ARG LEU GLY GLU ASP SEQRES 24 B 364 HIS VAL GLY MET GLY SER ASP PHE ASP GLY ALA THR ILE SEQRES 25 B 364 PRO GLN GLY ILE ALA ASP VAL THR GLY LEU PRO ALA LEU SEQRES 26 B 364 GLN ALA ALA MET ARG ALA HIS GLY TYR ASP GLU PRO LEU SEQRES 27 B 364 MET ARG LYS LEU CYS HIS GLU ASN TRP TYR GLY LEU LEU SEQRES 28 B 364 GLU ARG THR TRP GLY GLU GLY HIS HIS HIS HIS HIS HIS HET LY0 A 363 12 HET ZN A 364 1 HET ZN A 365 1 HET LY0 B 363 12 HET ZN B 364 1 HET ZN B 365 1 HETNAM LY0 (2R)-3-[(R)-[(1R)-1-AMINOETHYL](HYDROXY)PHOSPHORYL]-2- HETNAM 2 LY0 METHYLPROPANOIC ACID HETNAM ZN ZINC ION FORMUL 3 LY0 2(C6 H14 N O4 P) FORMUL 4 ZN 4(ZN 2+) FORMUL 9 HOH *638(H2 O) HELIX 1 1 ASP A 13 ASN A 21 1 9 HELIX 2 2 ASN A 24 LYS A 31 1 8 HELIX 3 3 ASP A 39 GLY A 47 1 9 HELIX 4 4 ALA A 65 ALA A 74 1 10 HELIX 5 5 ARG A 86 ALA A 108 1 23 HELIX 6 6 THR A 117 GLY A 128 1 12 HELIX 7 7 LEU A 146 GLY A 156 1 11 HELIX 8 8 THR A 189 LYS A 203 1 15 HELIX 9 9 ASN A 212 SER A 223 1 12 HELIX 10 10 THR A 245 SER A 255 1 11 HELIX 11 11 ALA A 264 ARG A 269 1 6 HELIX 12 12 TRP A 280 GLY A 295 1 16 HELIX 13 13 ASP A 316 THR A 318 5 3 HELIX 14 14 GLY A 319 GLY A 331 1 13 HELIX 15 15 ASP A 333 HIS A 342 1 10 HELIX 16 16 HIS A 342 TRP A 353 1 12 HELIX 17 17 ASP B 13 ASN B 21 1 9 HELIX 18 18 ASN B 24 LYS B 31 1 8 HELIX 19 19 ASP B 39 GLY B 47 1 9 HELIX 20 20 ALA B 65 ASP B 73 1 9 HELIX 21 21 ARG B 86 ARG B 109 1 24 HELIX 22 22 THR B 117 GLY B 128 1 12 HELIX 23 23 LEU B 146 GLY B 156 1 11 HELIX 24 24 THR B 189 LYS B 203 1 15 HELIX 25 25 ASN B 212 SER B 223 1 12 HELIX 26 26 THR B 245 SER B 255 1 11 HELIX 27 27 ALA B 264 ARG B 269 1 6 HELIX 28 28 TRP B 280 GLY B 295 1 16 HELIX 29 29 ASP B 316 THR B 318 5 3 HELIX 30 30 GLY B 319 HIS B 330 1 12 HELIX 31 31 ASP B 333 HIS B 342 1 10 HELIX 32 32 HIS B 342 GLY B 354 1 13 SHEET 1 A 4 VAL A 7 ASN A 12 0 SHEET 2 A 4 PHE A 48 ILE A 55 1 O GLY A 50 N ASP A 9 SHEET 3 A 4 VAL A 130 GLU A 137 1 O GLU A 137 N ILE A 55 SHEET 4 A 4 PHE A 112 VAL A 114 1 N LYS A 113 O VAL A 130 SHEET 1 B 5 VAL A 7 ASN A 12 0 SHEET 2 B 5 PHE A 48 ILE A 55 1 O GLY A 50 N ASP A 9 SHEET 3 B 5 VAL A 130 GLU A 137 1 O GLU A 137 N ILE A 55 SHEET 4 B 5 LEU A 157 GLY A 161 1 O GLY A 161 N MET A 136 SHEET 5 B 5 MET A 205 LEU A 206 1 O MET A 205 N LEU A 160 SHEET 1 C 2 PHE A 77 GLU A 78 0 SHEET 2 C 2 ARG A 177 PHE A 178 -1 O PHE A 178 N PHE A 77 SHEET 1 D 3 VAL A 228 ALA A 229 0 SHEET 2 D 3 MET A 258 LEU A 261 1 O GLY A 260 N ALA A 229 SHEET 3 D 3 VAL A 299 MET A 301 1 O GLY A 300 N LEU A 261 SHEET 1 E 4 VAL B 7 ASN B 12 0 SHEET 2 E 4 PHE B 48 TYR B 56 1 O ALA B 54 N ASN B 12 SHEET 3 E 4 VAL B 130 GLU B 137 1 O ILE B 133 N PHE B 53 SHEET 4 E 4 PHE B 112 VAL B 114 1 N LYS B 113 O VAL B 130 SHEET 1 F 5 VAL B 7 ASN B 12 0 SHEET 2 F 5 PHE B 48 TYR B 56 1 O ALA B 54 N ASN B 12 SHEET 3 F 5 VAL B 130 GLU B 137 1 O ILE B 133 N PHE B 53 SHEET 4 F 5 LEU B 157 GLY B 161 1 O GLY B 161 N MET B 136 SHEET 5 F 5 MET B 205 LEU B 206 1 O MET B 205 N LEU B 160 SHEET 1 G 2 PHE B 77 GLU B 78 0 SHEET 2 G 2 ARG B 177 PHE B 178 -1 O PHE B 178 N PHE B 77 SHEET 1 H 3 VAL B 228 ALA B 229 0 SHEET 2 H 3 MET B 258 LEU B 261 1 O GLY B 260 N ALA B 229 SHEET 3 H 3 VAL B 299 MET B 301 1 O GLY B 300 N LEU B 261 LINK NE2 HIS A 11 ZN ZN A 364 1555 1555 2.23 LINK OD2 ASP A 13 ZN ZN A 364 1555 1555 2.22 LINK OD1 ASP A 13 ZN ZN A 364 1555 1555 2.26 LINK OE1 GLU A 137 ZN ZN A 364 1555 1555 2.14 LINK OE2 GLU A 137 ZN ZN A 365 1555 1555 2.10 LINK NE2 HIS A 210 ZN ZN A 365 1555 1555 2.20 LINK NE2 HIS A 231 ZN ZN A 365 1555 1555 2.24 LINK O31 LY0 A 363 ZN ZN A 364 1555 1555 2.21 LINK N1 LY0 A 363 ZN ZN A 364 1555 1555 2.33 LINK O32 LY0 A 363 ZN ZN A 365 1555 1555 2.22 LINK O62 LY0 A 363 ZN ZN A 365 1555 1555 2.24 LINK O31 LY0 A 363 ZN ZN A 365 1555 1555 2.36 LINK NE2 HIS B 11 ZN ZN B 364 1555 1555 2.21 LINK OD2 ASP B 13 ZN ZN B 364 1555 1555 2.25 LINK OD1 ASP B 13 ZN ZN B 364 1555 1555 2.27 LINK OE1 GLU B 137 ZN ZN B 364 1555 1555 2.13 LINK OE2 GLU B 137 ZN ZN B 365 1555 1555 2.11 LINK NE2 HIS B 210 ZN ZN B 365 1555 1555 2.16 LINK NE2 HIS B 231 ZN ZN B 365 1555 1555 2.23 LINK O31 LY0 B 363 ZN ZN B 364 1555 1555 2.25 LINK N1 LY0 B 363 ZN ZN B 364 1555 1555 2.33 LINK O62 LY0 B 363 ZN ZN B 365 1555 1555 2.27 LINK O32 LY0 B 363 ZN ZN B 365 1555 1555 2.27 LINK O31 LY0 B 363 ZN ZN B 365 1555 1555 2.33 CISPEP 1 PRO A 75 PRO A 76 0 2.66 CISPEP 2 PHE A 178 PRO A 179 0 -5.79 CISPEP 3 PRO B 75 PRO B 76 0 2.03 CISPEP 4 PHE B 178 PRO B 179 0 -6.38 SITE 1 AC1 15 HIS A 11 ASP A 13 TYR A 56 HIS A 63 SITE 2 AC1 15 GLU A 137 TRP A 164 PHE A 176 HIS A 210 SITE 3 AC1 15 HIS A 231 ARG A 242 PHE A 267 ASP A 304 SITE 4 AC1 15 GLY A 307 ZN A 364 ZN A 365 SITE 1 AC2 5 HIS A 11 ASP A 13 GLU A 137 LY0 A 363 SITE 2 AC2 5 ZN A 365 SITE 1 AC3 5 GLU A 137 HIS A 210 HIS A 231 LY0 A 363 SITE 2 AC3 5 ZN A 364 SITE 1 AC4 15 HIS B 11 ASP B 13 TYR B 56 HIS B 63 SITE 2 AC4 15 GLU B 137 TRP B 164 PHE B 176 HIS B 210 SITE 3 AC4 15 HIS B 231 ARG B 242 PHE B 267 ASP B 304 SITE 4 AC4 15 GLY B 307 ZN B 364 ZN B 365 SITE 1 AC5 5 HIS B 11 ASP B 13 GLU B 137 LY0 B 363 SITE 2 AC5 5 ZN B 365 SITE 1 AC6 5 GLU B 137 HIS B 210 HIS B 231 LY0 B 363 SITE 2 AC6 5 ZN B 364 CRYST1 46.649 50.325 81.436 83.65 73.64 67.65 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021437 -0.008814 -0.006258 0.00000 SCALE2 0.000000 0.021485 -0.000085 0.00000 SCALE3 0.000000 0.000000 0.012798 0.00000