HEADER VIRAL PROTEIN 26-FEB-10 3LYF TITLE CRYSTAL STRUCTURE OF THE RIFT VALLEY FEVER VIRUS NUCLEOCAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RIFT VALLEY FEVER VIRUS; SOURCE 3 ORGANISM_COMMON: RVFV; SOURCE 4 ORGANISM_TAXID: 11588; SOURCE 5 STRAIN: ZH-501; SOURCE 6 GENE: N; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 AI/PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSUMO KEYWDS NUCLEOCAPSID PROTEIN, N PROTEIN, RIFT VALLEY FEVER VIRUS, KEYWDS 2 RIBONUCLEOPROTEIN, VIRAL NUCLEOPROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.D.RAYMOND,J.L.SMITH REVDAT 3 21-FEB-24 3LYF 1 REMARK REVDAT 2 21-JUL-10 3LYF 1 JRNL REVDAT 1 30-JUN-10 3LYF 0 JRNL AUTH D.D.RAYMOND,M.E.PIPER,S.R.GERRARD,J.L.SMITH JRNL TITL STRUCTURE OF THE RIFT VALLEY FEVER VIRUS NUCLEOCAPSID JRNL TITL 2 PROTEIN REVEALS ANOTHER ARCHITECTURE FOR RNA ENCAPSIDATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 11769 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20547879 JRNL DOI 10.1073/PNAS.1001760107 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 83342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4393 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6041 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 323 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7557 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 616 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : -0.48000 REMARK 3 B23 (A**2) : 0.23000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.640 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7727 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5404 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10412 ; 1.293 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13113 ; 0.902 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 960 ; 5.252 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 343 ;34.996 ;23.411 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1381 ;13.777 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 66 ;18.381 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1138 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8544 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1570 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4821 ; 0.851 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1943 ; 0.196 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7690 ; 1.538 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2906 ; 2.297 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2721 ; 3.672 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-09; 16-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 23-ID-B; 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794,0.9796; 1.033 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS FOR REMARK 200 VERTICAL AND HORIZONTAL FOCUSING; REMARK 200 K-B PAIR OF BIOMORPH MIRRORS REMARK 200 FOR VERTICAL AND HORIZONTAL REMARK 200 FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; MARMOSAIC REMARK 200 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87736 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 3350, 100 MM NA/K PHOSPHATE PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 17 REMARK 465 ARG B 18 REMARK 465 VAL C 16 REMARK 465 ASP C 17 REMARK 465 ARG C 18 REMARK 465 ASN C 19 REMARK 465 VAL D 16 REMARK 465 ASP D 17 REMARK 465 ARG D 18 REMARK 465 ASN D 19 REMARK 465 PHE D 28 REMARK 465 ALA D 29 REMARK 465 TYR D 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 254 O HOH C 542 2.05 REMARK 500 O HOH A 254 O HOH A 454 2.17 REMARK 500 O HOH A 299 O HOH B 546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 38.71 -95.91 REMARK 500 MET A 145 49.48 -87.60 REMARK 500 ILE A 209 117.79 72.49 REMARK 500 ASN B 96 79.81 -119.20 REMARK 500 LEU B 111 44.93 -109.07 REMARK 500 MET B 145 46.00 -91.02 REMARK 500 ILE B 209 118.81 73.14 REMARK 500 GLN C 14 54.67 -115.31 REMARK 500 LYS C 74 78.96 -108.46 REMARK 500 ASN C 96 77.04 -117.97 REMARK 500 LEU C 111 45.63 -107.73 REMARK 500 MET C 145 48.86 -86.21 REMARK 500 ILE C 209 115.05 65.08 REMARK 500 MET D 145 43.27 -91.41 REMARK 500 ILE D 209 118.07 71.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 246 DBREF 3LYF A 1 245 UNP D3K5I7 D3K5I7_RVFV 1 245 DBREF 3LYF B 1 245 UNP D3K5I7 D3K5I7_RVFV 1 245 DBREF 3LYF C 1 245 UNP D3K5I7 D3K5I7_RVFV 1 245 DBREF 3LYF D 1 245 UNP D3K5I7 D3K5I7_RVFV 1 245 SEQRES 1 A 245 MET ASP ASN TYR GLN GLU LEU ALA ILE GLN PHE ALA ALA SEQRES 2 A 245 GLN ALA VAL ASP ARG ASN GLU ILE GLU GLN TRP VAL ARG SEQRES 3 A 245 GLU PHE ALA TYR GLN GLY PHE ASP ALA ARG ARG VAL ILE SEQRES 4 A 245 GLU LEU LEU LYS GLN TYR GLY GLY ALA ASP TRP GLU LYS SEQRES 5 A 245 ASP ALA LYS LYS MET ILE VAL LEU ALA LEU THR ARG GLY SEQRES 6 A 245 ASN LYS PRO ARG ARG MET MET MET LYS MET SER LYS GLU SEQRES 7 A 245 GLY LYS ALA THR VAL GLU ALA LEU ILE ASN LYS TYR LYS SEQRES 8 A 245 LEU LYS GLU GLY ASN PRO SER ARG ASP GLU LEU THR LEU SEQRES 9 A 245 SER ARG VAL ALA ALA ALA LEU ALA GLY ARG THR CYS GLN SEQRES 10 A 245 ALA LEU VAL VAL LEU SER GLU TRP LEU PRO VAL THR GLY SEQRES 11 A 245 THR THR MET ASP GLY LEU SER PRO ALA TYR PRO ARG HIS SEQRES 12 A 245 MET MET HIS PRO SER PHE ALA GLY MET VAL ASP PRO SER SEQRES 13 A 245 LEU PRO GLY ASP TYR LEU ARG ALA ILE LEU ASP ALA HIS SEQRES 14 A 245 SER LEU TYR LEU LEU GLN PHE SER ARG VAL ILE ASN PRO SEQRES 15 A 245 ASN LEU ARG GLY ARG THR LYS GLU GLU VAL ALA ALA THR SEQRES 16 A 245 PHE THR GLN PRO MET ASN ALA ALA VAL ASN SER ASN PHE SEQRES 17 A 245 ILE SER HIS GLU LYS ARG ARG GLU PHE LEU LYS ALA PHE SEQRES 18 A 245 GLY LEU VAL ASP SER ASN GLY LYS PRO SER ALA ALA VAL SEQRES 19 A 245 MET ALA ALA ALA GLN ALA TYR LYS THR ALA ALA SEQRES 1 B 245 MET ASP ASN TYR GLN GLU LEU ALA ILE GLN PHE ALA ALA SEQRES 2 B 245 GLN ALA VAL ASP ARG ASN GLU ILE GLU GLN TRP VAL ARG SEQRES 3 B 245 GLU PHE ALA TYR GLN GLY PHE ASP ALA ARG ARG VAL ILE SEQRES 4 B 245 GLU LEU LEU LYS GLN TYR GLY GLY ALA ASP TRP GLU LYS SEQRES 5 B 245 ASP ALA LYS LYS MET ILE VAL LEU ALA LEU THR ARG GLY SEQRES 6 B 245 ASN LYS PRO ARG ARG MET MET MET LYS MET SER LYS GLU SEQRES 7 B 245 GLY LYS ALA THR VAL GLU ALA LEU ILE ASN LYS TYR LYS SEQRES 8 B 245 LEU LYS GLU GLY ASN PRO SER ARG ASP GLU LEU THR LEU SEQRES 9 B 245 SER ARG VAL ALA ALA ALA LEU ALA GLY ARG THR CYS GLN SEQRES 10 B 245 ALA LEU VAL VAL LEU SER GLU TRP LEU PRO VAL THR GLY SEQRES 11 B 245 THR THR MET ASP GLY LEU SER PRO ALA TYR PRO ARG HIS SEQRES 12 B 245 MET MET HIS PRO SER PHE ALA GLY MET VAL ASP PRO SER SEQRES 13 B 245 LEU PRO GLY ASP TYR LEU ARG ALA ILE LEU ASP ALA HIS SEQRES 14 B 245 SER LEU TYR LEU LEU GLN PHE SER ARG VAL ILE ASN PRO SEQRES 15 B 245 ASN LEU ARG GLY ARG THR LYS GLU GLU VAL ALA ALA THR SEQRES 16 B 245 PHE THR GLN PRO MET ASN ALA ALA VAL ASN SER ASN PHE SEQRES 17 B 245 ILE SER HIS GLU LYS ARG ARG GLU PHE LEU LYS ALA PHE SEQRES 18 B 245 GLY LEU VAL ASP SER ASN GLY LYS PRO SER ALA ALA VAL SEQRES 19 B 245 MET ALA ALA ALA GLN ALA TYR LYS THR ALA ALA SEQRES 1 C 245 MET ASP ASN TYR GLN GLU LEU ALA ILE GLN PHE ALA ALA SEQRES 2 C 245 GLN ALA VAL ASP ARG ASN GLU ILE GLU GLN TRP VAL ARG SEQRES 3 C 245 GLU PHE ALA TYR GLN GLY PHE ASP ALA ARG ARG VAL ILE SEQRES 4 C 245 GLU LEU LEU LYS GLN TYR GLY GLY ALA ASP TRP GLU LYS SEQRES 5 C 245 ASP ALA LYS LYS MET ILE VAL LEU ALA LEU THR ARG GLY SEQRES 6 C 245 ASN LYS PRO ARG ARG MET MET MET LYS MET SER LYS GLU SEQRES 7 C 245 GLY LYS ALA THR VAL GLU ALA LEU ILE ASN LYS TYR LYS SEQRES 8 C 245 LEU LYS GLU GLY ASN PRO SER ARG ASP GLU LEU THR LEU SEQRES 9 C 245 SER ARG VAL ALA ALA ALA LEU ALA GLY ARG THR CYS GLN SEQRES 10 C 245 ALA LEU VAL VAL LEU SER GLU TRP LEU PRO VAL THR GLY SEQRES 11 C 245 THR THR MET ASP GLY LEU SER PRO ALA TYR PRO ARG HIS SEQRES 12 C 245 MET MET HIS PRO SER PHE ALA GLY MET VAL ASP PRO SER SEQRES 13 C 245 LEU PRO GLY ASP TYR LEU ARG ALA ILE LEU ASP ALA HIS SEQRES 14 C 245 SER LEU TYR LEU LEU GLN PHE SER ARG VAL ILE ASN PRO SEQRES 15 C 245 ASN LEU ARG GLY ARG THR LYS GLU GLU VAL ALA ALA THR SEQRES 16 C 245 PHE THR GLN PRO MET ASN ALA ALA VAL ASN SER ASN PHE SEQRES 17 C 245 ILE SER HIS GLU LYS ARG ARG GLU PHE LEU LYS ALA PHE SEQRES 18 C 245 GLY LEU VAL ASP SER ASN GLY LYS PRO SER ALA ALA VAL SEQRES 19 C 245 MET ALA ALA ALA GLN ALA TYR LYS THR ALA ALA SEQRES 1 D 245 MET ASP ASN TYR GLN GLU LEU ALA ILE GLN PHE ALA ALA SEQRES 2 D 245 GLN ALA VAL ASP ARG ASN GLU ILE GLU GLN TRP VAL ARG SEQRES 3 D 245 GLU PHE ALA TYR GLN GLY PHE ASP ALA ARG ARG VAL ILE SEQRES 4 D 245 GLU LEU LEU LYS GLN TYR GLY GLY ALA ASP TRP GLU LYS SEQRES 5 D 245 ASP ALA LYS LYS MET ILE VAL LEU ALA LEU THR ARG GLY SEQRES 6 D 245 ASN LYS PRO ARG ARG MET MET MET LYS MET SER LYS GLU SEQRES 7 D 245 GLY LYS ALA THR VAL GLU ALA LEU ILE ASN LYS TYR LYS SEQRES 8 D 245 LEU LYS GLU GLY ASN PRO SER ARG ASP GLU LEU THR LEU SEQRES 9 D 245 SER ARG VAL ALA ALA ALA LEU ALA GLY ARG THR CYS GLN SEQRES 10 D 245 ALA LEU VAL VAL LEU SER GLU TRP LEU PRO VAL THR GLY SEQRES 11 D 245 THR THR MET ASP GLY LEU SER PRO ALA TYR PRO ARG HIS SEQRES 12 D 245 MET MET HIS PRO SER PHE ALA GLY MET VAL ASP PRO SER SEQRES 13 D 245 LEU PRO GLY ASP TYR LEU ARG ALA ILE LEU ASP ALA HIS SEQRES 14 D 245 SER LEU TYR LEU LEU GLN PHE SER ARG VAL ILE ASN PRO SEQRES 15 D 245 ASN LEU ARG GLY ARG THR LYS GLU GLU VAL ALA ALA THR SEQRES 16 D 245 PHE THR GLN PRO MET ASN ALA ALA VAL ASN SER ASN PHE SEQRES 17 D 245 ILE SER HIS GLU LYS ARG ARG GLU PHE LEU LYS ALA PHE SEQRES 18 D 245 GLY LEU VAL ASP SER ASN GLY LYS PRO SER ALA ALA VAL SEQRES 19 D 245 MET ALA ALA ALA GLN ALA TYR LYS THR ALA ALA HET GOL A 246 6 HET GOL B 246 6 HET GOL C 246 6 HET GOL D 246 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *616(H2 O) HELIX 1 1 ASP A 2 PHE A 11 1 10 HELIX 2 2 GLU A 20 VAL A 25 1 6 HELIX 3 3 ASP A 34 GLY A 47 1 14 HELIX 4 4 ASP A 49 ARG A 64 1 16 HELIX 5 5 LYS A 67 MET A 73 1 7 HELIX 6 6 SER A 76 LYS A 91 1 16 HELIX 7 7 THR A 103 LEU A 111 1 9 HELIX 8 8 LEU A 111 SER A 123 1 13 HELIX 9 9 GLU A 124 LEU A 126 5 3 HELIX 10 10 THR A 129 SER A 137 1 9 HELIX 11 11 PRO A 141 MET A 145 5 5 HELIX 12 12 HIS A 146 VAL A 153 5 8 HELIX 13 13 PRO A 158 ASN A 181 1 24 HELIX 14 14 PRO A 182 ARG A 185 5 4 HELIX 15 15 THR A 188 ASN A 205 1 18 HELIX 16 16 SER A 210 PHE A 221 1 12 HELIX 17 17 SER A 231 THR A 243 1 13 HELIX 18 18 ASP B 2 ALA B 12 1 11 HELIX 19 19 ASN B 19 TRP B 24 5 6 HELIX 20 20 ASP B 34 GLY B 47 1 14 HELIX 21 21 ASP B 49 ARG B 64 1 16 HELIX 22 22 LYS B 67 MET B 73 1 7 HELIX 23 23 SER B 76 LYS B 91 1 16 HELIX 24 24 THR B 103 LEU B 111 1 9 HELIX 25 25 LEU B 111 SER B 123 1 13 HELIX 26 26 GLU B 124 LEU B 126 5 3 HELIX 27 27 THR B 129 SER B 137 1 9 HELIX 28 28 PRO B 141 MET B 145 5 5 HELIX 29 29 HIS B 146 VAL B 153 5 8 HELIX 30 30 PRO B 158 ASN B 181 1 24 HELIX 31 31 PRO B 182 ARG B 187 5 6 HELIX 32 32 THR B 188 ASN B 205 1 18 HELIX 33 33 SER B 210 PHE B 221 1 12 HELIX 34 34 SER B 231 ALA B 244 1 14 HELIX 35 35 ASP C 2 PHE C 11 1 10 HELIX 36 36 GLU C 20 VAL C 25 1 6 HELIX 37 37 ASP C 34 GLY C 47 1 14 HELIX 38 38 ASP C 49 ARG C 64 1 16 HELIX 39 39 LYS C 67 LYS C 74 1 8 HELIX 40 40 SER C 76 LYS C 91 1 16 HELIX 41 41 THR C 103 LEU C 111 1 9 HELIX 42 42 LEU C 111 SER C 123 1 13 HELIX 43 43 GLU C 124 LEU C 126 5 3 HELIX 44 44 THR C 129 SER C 137 1 9 HELIX 45 45 PRO C 141 MET C 145 5 5 HELIX 46 46 HIS C 146 VAL C 153 5 8 HELIX 47 47 PRO C 158 ASN C 181 1 24 HELIX 48 48 THR C 188 SER C 206 1 19 HELIX 49 49 SER C 210 PHE C 221 1 12 HELIX 50 50 SER C 231 ALA C 244 1 14 HELIX 51 51 ASP D 2 PHE D 11 1 10 HELIX 52 52 GLU D 20 TRP D 24 5 5 HELIX 53 53 ASP D 34 GLY D 47 1 14 HELIX 54 54 ASP D 49 ARG D 64 1 16 HELIX 55 55 LYS D 67 LYS D 74 1 8 HELIX 56 56 SER D 76 LYS D 91 1 16 HELIX 57 57 THR D 103 LEU D 111 1 9 HELIX 58 58 LEU D 111 SER D 123 1 13 HELIX 59 59 GLU D 124 LEU D 126 5 3 HELIX 60 60 THR D 129 SER D 137 1 9 HELIX 61 61 PRO D 141 MET D 145 5 5 HELIX 62 62 HIS D 146 VAL D 153 5 8 HELIX 63 63 PRO D 158 ASN D 181 1 24 HELIX 64 64 PRO D 182 ARG D 187 5 6 HELIX 65 65 THR D 188 ASN D 205 1 18 HELIX 66 66 SER D 210 PHE D 221 1 12 HELIX 67 67 SER D 231 ALA D 244 1 14 CISPEP 1 GLN C 14 ALA C 15 0 14.31 SITE 1 AC1 7 PRO A 141 ARG A 142 HIS A 143 PHE A 221 SITE 2 AC1 7 GLY A 222 LEU A 223 HOH A 480 SITE 1 AC2 7 HOH A 286 TYR B 140 PRO B 141 ARG B 142 SITE 2 AC2 7 HIS B 143 HOH B 275 HOH B 604 SITE 1 AC3 5 TYR C 140 PRO C 141 ARG C 142 HIS C 143 SITE 2 AC3 5 HOH C 400 SITE 1 AC4 8 PRO D 141 ARG D 142 HIS D 143 PHE D 221 SITE 2 AC4 8 GLY D 222 LEU D 223 HOH D 520 HOH D 528 CRYST1 67.110 69.630 80.620 78.45 69.72 60.97 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014901 -0.008270 -0.005187 0.00000 SCALE2 0.000000 0.016425 -0.000642 0.00000 SCALE3 0.000000 0.000000 0.013234 0.00000