HEADER BIOSYNTHETIC PROTEIN 01-MAR-10 3LZE TITLE PLASMODIUM VIVAX 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE (PTPS), E37C TITLE 2 CATALYTIC RESIDUE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 6-PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.3.12; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_TAXID: 5855; SOURCE 4 GENE: PVX_114505; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BG1861 KEYWDS PTS, PTP SYNTHASE, PTPS, METAL-BINDING, TETRAHYDROBIOPTERIN KEYWDS 2 BIOSYNTHESIS, FOLATE BIOSYNTHESIS, STRUCTURAL GENOMICS, MEDICAL KEYWDS 3 STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA, MSGPP, BIOSYNTHETIC KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 4 06-SEP-23 3LZE 1 REMARK REVDAT 3 13-OCT-21 3LZE 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3LZE 1 REMARK REVDAT 1 07-APR-10 3LZE 0 JRNL AUTH E.T.LARSON,J.BOSCH,J.E.KIM,A.KELLEY,L.CASTANEDA,A.NAPULI, JRNL AUTH 2 N.MUELLER,C.L.M.J.VERLINDE,W.C.VAN VOORHIS,F.S.BUCKNER, JRNL AUTH 3 E.FAN,W.G.J.HOL,E.A.MERRITT JRNL TITL STRUCTURAL ANALYSIS OF THE DUAL-FUNCTIONAL JRNL TITL 2 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE FROM MALARIA PARASITES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0106 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1322 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1327 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.81000 REMARK 3 B22 (A**2) : -1.81000 REMARK 3 B33 (A**2) : 2.71000 REMARK 3 B12 (A**2) : -0.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.364 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1422 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 970 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1933 ; 1.542 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2372 ; 0.862 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 175 ; 6.417 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;37.703 ;24.533 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 259 ;14.500 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.421 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 213 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1589 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 289 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 839 ; 2.775 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 333 ; 0.960 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1380 ; 4.025 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 583 ; 4.700 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 547 ; 6.613 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5090 6.0220 21.8000 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.1925 REMARK 3 T33: 0.2571 T12: 0.0799 REMARK 3 T13: 0.0654 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 12.9164 L22: 9.4395 REMARK 3 L33: 17.9805 L12: -14.4825 REMARK 3 L13: -9.7999 L23: 7.1801 REMARK 3 S TENSOR REMARK 3 S11: -0.3609 S12: -0.2816 S13: 0.7219 REMARK 3 S21: -0.1256 S22: 0.4532 S23: -1.0271 REMARK 3 S31: 0.4643 S32: -0.1838 S33: -0.0923 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1300 19.2790 28.5980 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.1696 REMARK 3 T33: 0.1647 T12: -0.0289 REMARK 3 T13: -0.0323 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 1.8095 L22: 0.1482 REMARK 3 L33: 4.5082 L12: 0.7058 REMARK 3 L13: 0.1433 L23: 1.6869 REMARK 3 S TENSOR REMARK 3 S11: 0.1053 S12: -0.3152 S13: -0.3074 REMARK 3 S21: -0.2746 S22: -0.0196 S23: -0.0936 REMARK 3 S31: 0.1972 S32: -0.5335 S33: -0.0857 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5530 11.3000 23.4990 REMARK 3 T TENSOR REMARK 3 T11: 0.1891 T22: 0.1790 REMARK 3 T33: 0.1821 T12: 0.0358 REMARK 3 T13: 0.0551 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 2.5009 L22: 0.5368 REMARK 3 L33: 0.9516 L12: -1.0233 REMARK 3 L13: -1.2157 L23: 0.5106 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.1085 S13: -0.0367 REMARK 3 S21: -0.0693 S22: -0.0803 S23: -0.0261 REMARK 3 S31: 0.0932 S32: 0.0185 S33: 0.1241 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1380 17.2620 26.8970 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.1953 REMARK 3 T33: 0.3509 T12: 0.0737 REMARK 3 T13: -0.0031 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 13.6624 L22: 12.4852 REMARK 3 L33: 4.1123 L12: -12.3732 REMARK 3 L13: -6.8762 L23: 8.2568 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: -0.5643 S13: 0.5393 REMARK 3 S21: -0.2258 S22: 0.2014 S23: -0.5124 REMARK 3 S31: -0.0926 S32: 0.0783 S33: -0.1516 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0180 25.6210 30.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.2294 T22: 0.1919 REMARK 3 T33: 0.1775 T12: -0.0001 REMARK 3 T13: 0.0253 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.6739 L22: 1.8685 REMARK 3 L33: 4.1688 L12: 1.6038 REMARK 3 L13: 1.0315 L23: 0.4536 REMARK 3 S TENSOR REMARK 3 S11: 0.1536 S12: -0.2087 S13: 0.2580 REMARK 3 S21: -0.1056 S22: -0.1154 S23: -0.2895 REMARK 3 S31: 0.1083 S32: 0.1486 S33: -0.0381 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): -19.5030 32.6970 28.1550 REMARK 3 T TENSOR REMARK 3 T11: 0.2746 T22: 0.2476 REMARK 3 T33: 0.0339 T12: -0.0019 REMARK 3 T13: -0.0217 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.5290 L22: 1.1850 REMARK 3 L33: 2.2226 L12: -0.1993 REMARK 3 L13: -0.9175 L23: 0.2063 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.1057 S13: 0.0107 REMARK 3 S21: -0.1544 S22: -0.1583 S23: -0.0481 REMARK 3 S31: -0.0610 S32: -0.3817 S33: 0.0989 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2870 24.1200 23.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.2102 T22: 0.1428 REMARK 3 T33: 0.1630 T12: -0.0036 REMARK 3 T13: 0.0147 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.7101 L22: 3.8414 REMARK 3 L33: 1.6905 L12: -1.6295 REMARK 3 L13: -0.3606 L23: 1.1421 REMARK 3 S TENSOR REMARK 3 S11: 0.2132 S12: -0.1767 S13: -0.1279 REMARK 3 S21: -0.3172 S22: -0.0716 S23: -0.0787 REMARK 3 S31: -0.0462 S32: 0.1334 S33: -0.1416 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6140 13.7880 17.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.2158 T22: 0.1465 REMARK 3 T33: 0.2006 T12: 0.0445 REMARK 3 T13: 0.0462 T23: 0.0649 REMARK 3 L TENSOR REMARK 3 L11: 4.5015 L22: 2.6281 REMARK 3 L33: 0.6168 L12: 0.2673 REMARK 3 L13: -1.7052 L23: -0.9270 REMARK 3 S TENSOR REMARK 3 S11: 0.1335 S12: 0.1709 S13: 0.2561 REMARK 3 S21: -0.2614 S22: -0.2012 S23: -0.2204 REMARK 3 S31: 0.0933 S32: -0.0337 S33: 0.0677 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3LZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19289 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.66100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.5.0106 REMARK 200 STARTING MODEL: 3LX3 WITH MUTATION AND WITHOUT LIGAND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 UL 17 MG/ML PROTEIN (IN SGPP BUFFER) REMARK 280 MIXED WITH 1 UL 0.1 M SODIUM ACETATE (PH 5.2), 24% PEG 3350, 1 REMARK 280 MM TCEP; CRYOPROTECTED BY 5 SEC DIP IN 96 MM SODIUM ACETATE (PH REMARK 280 5.2), 24% PEG 3350, 134 MM NACL, 20% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 65.74750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.95934 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.55667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 65.74750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.95934 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.55667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 65.74750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.95934 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 24.55667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 65.74750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.95934 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.55667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 65.74750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.95934 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 24.55667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 65.74750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.95934 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.55667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.91867 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 49.11333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 75.91867 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 49.11333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 75.91867 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 49.11333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 75.91867 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.11333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 75.91867 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 49.11333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 75.91867 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 49.11333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 73.67000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 73.67000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 73.67000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 HIS A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 GLU A 7 REMARK 465 PRO A 8 REMARK 465 ARG A 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 135 NH2 ARG A 170 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 94 NE2 GLN A 118 17555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 146.65 -170.28 REMARK 500 HIS A 40 -157.65 -160.74 REMARK 500 ASN A 96 -116.18 49.85 REMARK 500 SER A 124 44.90 -80.58 REMARK 500 ASP A 142 121.91 95.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 28 NE2 REMARK 620 2 HIS A 40 NE2 90.1 REMARK 620 3 HIS A 42 NE2 103.0 103.0 REMARK 620 4 HOH A 231 O 93.2 97.4 153.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE0 A 211 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A0S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE (PTPS) REMARK 900 FROM PLASMODIUM VIVAX AT 2.2 A RESOLUTION REMARK 900 RELATED ID: 3LX3 RELATED DB: PDB REMARK 900 PLASMODIUM VIVAX 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE (PTPS) IN REMARK 900 COMPLEX WITH XANTHOPTERIN REMARK 900 RELATED ID: 1Y13 RELATED DB: PDB REMARK 900 STRUCTURAL ANALYSIS OF PLASMODIUM FALCIPARUM 6-PYRUVOYL REMARK 900 TETRAHYDROPTERIN SYNTHASE (PTPS) REMARK 900 RELATED ID: 3M0N RELATED DB: PDB REMARK 900 PLASMODIUM VIVAX 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE (PTPS), E37A REMARK 900 CATALYTIC RESIDUE MUTANT REMARK 900 RELATED ID: PVIV004546AAA RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 E37C MUTATION CONFIRMED FROM PLASMID DNA SEQUENCE DBREF 3LZE A 1 172 UNP A5K2B2 A5K2B2_PLAVI 1 172 SEQADV 3LZE MET A -7 UNP A5K2B2 EXPRESSION TAG SEQADV 3LZE ALA A -6 UNP A5K2B2 EXPRESSION TAG SEQADV 3LZE HIS A -5 UNP A5K2B2 EXPRESSION TAG SEQADV 3LZE HIS A -4 UNP A5K2B2 EXPRESSION TAG SEQADV 3LZE HIS A -3 UNP A5K2B2 EXPRESSION TAG SEQADV 3LZE HIS A -2 UNP A5K2B2 EXPRESSION TAG SEQADV 3LZE HIS A -1 UNP A5K2B2 EXPRESSION TAG SEQADV 3LZE HIS A 0 UNP A5K2B2 EXPRESSION TAG SEQADV 3LZE CYS A 37 UNP A5K2B2 GLU 37 ENGINEERED MUTATION SEQRES 1 A 180 MET ALA HIS HIS HIS HIS HIS HIS MET ASN PRO HIS PRO SEQRES 2 A 180 VAL GLU PRO ARG ASP GLN ILE ALA GLU LEU LEU VAL GLU SEQRES 3 A 180 SER PRO LEU PHE SER PHE ASN CYS ALA HIS PHE ILE ALA SEQRES 4 A 180 PHE LYS GLY PHE ARG CYS THR LEU HIS GLY HIS ASN TYR SEQRES 5 A 180 ASN VAL SER LEU ARG LEU ARG GLY ASN ILE GLN GLY ASP SEQRES 6 A 180 GLY TYR VAL ILE ASP PHE SER ILE LEU LYS GLU LYS VAL SEQRES 7 A 180 ARG LYS VAL CYS LYS GLN LEU ASP HIS HIS PHE ILE LEU SEQRES 8 A 180 PRO MET TYR SER ASP VAL LEU ASN ILE GLN GLU VAL ASN SEQRES 9 A 180 ASP ASN PHE LYS ILE THR CYS GLU ASP ASN SER GLU TYR SEQRES 10 A 180 SER PHE PRO LYS ARG ASP CYS VAL GLN ILE PRO ILE LYS SEQRES 11 A 180 HIS SER SER THR GLU GLU ILE GLY LEU TYR ILE LEU ASN SEQRES 12 A 180 GLN LEU ILE GLU GLU ILE ASP LEU PRO PHE LEU LYS THR SEQRES 13 A 180 ARG SER VAL ASN TYR MET GLU VAL THR VAL SER GLU SER SEQRES 14 A 180 PRO SER GLN LYS ALA THR VAL HIS ARG ASN ILE HET ZN A 201 1 HET PE0 A 211 12 HETNAM ZN ZINC ION HETNAM PE0 PTERINE FORMUL 2 ZN ZN 2+ FORMUL 3 PE0 C6 H5 N5 O FORMUL 4 HOH *54(H2 O) HELIX 1 1 ASP A 62 ASP A 78 1 17 HELIX 2 2 SER A 125 ASP A 142 1 18 HELIX 3 3 ASP A 142 ARG A 149 1 8 SHEET 1 A 3 ILE A 12 VAL A 17 0 SHEET 2 A 3 HIS A 40 ASN A 53 -1 O LEU A 48 N VAL A 17 SHEET 3 A 3 SER A 23 HIS A 28 -1 N CYS A 26 O HIS A 42 SHEET 1 B 4 ILE A 12 VAL A 17 0 SHEET 2 B 4 HIS A 40 ASN A 53 -1 O LEU A 48 N VAL A 17 SHEET 3 B 4 TYR A 153 SER A 161 -1 O GLU A 155 N ARG A 49 SHEET 4 B 4 GLN A 164 ASN A 171 -1 O ALA A 166 N VAL A 158 SHEET 1 C 2 ALA A 31 PHE A 32 0 SHEET 2 C 2 PHE A 35 ARG A 36 -1 O PHE A 35 N PHE A 32 SHEET 1 D 2 PHE A 81 PRO A 84 0 SHEET 2 D 2 CYS A 116 ILE A 119 1 O VAL A 117 N LEU A 83 SHEET 1 E 3 LEU A 90 VAL A 95 0 SHEET 2 E 3 ASN A 98 CYS A 103 -1 O LYS A 100 N GLN A 93 SHEET 3 E 3 GLU A 108 PRO A 112 -1 O PHE A 111 N PHE A 99 LINK NE2 HIS A 28 ZN ZN A 201 1555 1555 2.11 LINK NE2 HIS A 40 ZN ZN A 201 1555 1555 1.98 LINK NE2 HIS A 42 ZN ZN A 201 1555 1555 2.06 LINK ZN ZN A 201 O HOH A 231 1555 1555 2.24 SITE 1 AC1 5 HIS A 28 HIS A 40 HIS A 42 GLU A 160 SITE 2 AC1 5 HOH A 231 SITE 1 AC2 9 TYR A 59 ILE A 61 ASP A 62 PHE A 63 SITE 2 AC2 9 SER A 125 THR A 126 GLU A 127 GLU A 160 SITE 3 AC2 9 HOH A 231 CRYST1 131.495 131.495 73.670 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007605 0.004391 0.000000 0.00000 SCALE2 0.000000 0.008781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013574 0.00000