HEADER OXIDOREDUCTASE 04-MAR-10 3M12 TITLE CRYSTAL STRUCTURE OF THE LYS265ARG PHOSPHATE-CRYTSALLIZED MUTANT OF TITLE 2 MONOMERIC SARCOSINE OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOMERIC SARCOSINE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MSOX; COMPND 5 EC: 1.5.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. B-0618; SOURCE 3 ORGANISM_TAXID: 69000; SOURCE 4 STRAIN: B-0618; SOURCE 5 GENE: SOXA, SOX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOPROTEIN OXIDASE, FAD, OXIDOREDUCTASE, CYTOPLASM, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.S.MATHEWS,Z.-W.CHEN,M.S.JORNS REVDAT 5 21-FEB-24 3M12 1 REMARK REVDAT 4 13-OCT-21 3M12 1 REMARK SEQADV REVDAT 3 08-NOV-17 3M12 1 REMARK REVDAT 2 12-MAY-10 3M12 1 JRNL REVDAT 1 21-APR-10 3M12 0 JRNL AUTH M.S.JORNS,Z.W.CHEN,F.S.MATHEWS JRNL TITL STRUCTURAL CHARACTERIZATION OF MUTATIONS AT THE OXYGEN JRNL TITL 2 ACTIVATION SITE IN MONOMERIC SARCOSINE OXIDASE. JRNL REF BIOCHEMISTRY V. 49 3631 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20353187 JRNL DOI 10.1021/BI100160J REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 93829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6339 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 335 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 792 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6290 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8547 ; 1.123 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 774 ; 6.021 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;33.688 ;24.169 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1009 ;12.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;14.227 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 910 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4847 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3809 ; 0.402 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6129 ; 0.793 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2481 ; 1.272 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2414 ; 2.151 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 381 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6431 32.4988 30.8258 REMARK 3 T TENSOR REMARK 3 T11: 0.0113 T22: 0.0103 REMARK 3 T33: 0.0331 T12: -0.0058 REMARK 3 T13: 0.0001 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.4881 L22: 0.1937 REMARK 3 L33: 0.6229 L12: -0.0569 REMARK 3 L13: -0.1549 L23: 0.1459 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.0384 S13: 0.0393 REMARK 3 S21: -0.0024 S22: 0.0344 S23: -0.0436 REMARK 3 S31: -0.0304 S32: 0.0489 S33: -0.0509 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1001 B 1381 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2542 30.6416 12.0037 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0048 REMARK 3 T33: 0.0213 T12: 0.0080 REMARK 3 T13: -0.0035 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.4862 L22: 0.1846 REMARK 3 L33: 0.7981 L12: -0.0343 REMARK 3 L13: -0.0121 L23: 0.0270 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: -0.0092 S13: -0.0486 REMARK 3 S21: -0.0366 S22: 0.0051 S23: 0.0005 REMARK 3 S31: -0.0321 S32: -0.0276 S33: -0.0098 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3M12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93847 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIRECT REFINEMENT FROM REMARK 200 WILD TYPE COORDINATES REMARK 200 SOFTWARE USED: DIRECT REFINEMENT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M NA/K PHOSPHATE BUFFER, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.62550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 382 REMARK 465 SER A 383 REMARK 465 LEU A 384 REMARK 465 GLN A 385 REMARK 465 LYS A 386 REMARK 465 THR A 387 REMARK 465 THR A 388 REMARK 465 ILE A 389 REMARK 465 LYS B 386 REMARK 465 THR B 387 REMARK 465 THR B 388 REMARK 465 ILE B 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 51.50 -101.17 REMARK 500 PHE A 35 -144.93 -130.40 REMARK 500 ASP A 47 -49.48 78.85 REMARK 500 ASP A 47 -45.82 75.35 REMARK 500 ASN A 306 43.57 -89.20 REMARK 500 HIS A 345 26.97 -143.41 REMARK 500 ALA B 11 54.24 -103.87 REMARK 500 PHE B 35 -147.84 -127.02 REMARK 500 ASP B 47 -45.69 68.88 REMARK 500 ASP B 47 -50.61 73.58 REMARK 500 ASN B 306 47.81 -89.25 REMARK 500 HIS B 345 26.57 -142.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M13 RELATED DB: PDB DBREF 3M12 A 1 389 UNP P40859 MSOX_BACB0 2 390 DBREF 3M12 B 1 389 UNP P40859 MSOX_BACB0 2 390 SEQADV 3M12 ARG A 265 UNP P40859 LYS 266 ENGINEERED MUTATION SEQADV 3M12 ARG B 265 UNP P40859 LYS 266 ENGINEERED MUTATION SEQRES 1 A 389 SER THR HIS PHE ASP VAL ILE VAL VAL GLY ALA GLY SER SEQRES 2 A 389 MET GLY MET ALA ALA GLY TYR GLN LEU ALA LYS GLN GLY SEQRES 3 A 389 VAL LYS THR LEU LEU VAL ASP ALA PHE ASP PRO PRO HIS SEQRES 4 A 389 THR ASN GLY SER HIS HIS GLY ASP THR ARG ILE ILE ARG SEQRES 5 A 389 HIS ALA TYR GLY GLU GLY ARG GLU TYR VAL PRO LEU ALA SEQRES 6 A 389 LEU ARG SER GLN GLU LEU TRP TYR GLU LEU GLU LYS GLU SEQRES 7 A 389 THR HIS HIS LYS ILE PHE THR LYS THR GLY VAL LEU VAL SEQRES 8 A 389 PHE GLY PRO LYS GLY GLU SER ALA PHE VAL ALA GLU THR SEQRES 9 A 389 MET GLU ALA ALA LYS GLU HIS SER LEU THR VAL ASP LEU SEQRES 10 A 389 LEU GLU GLY ASP GLU ILE ASN LYS ARG TRP PRO GLY ILE SEQRES 11 A 389 THR VAL PRO GLU ASN TYR ASN ALA ILE PHE GLU PRO ASN SEQRES 12 A 389 SER GLY VAL LEU PHE SER GLU ASN CYS ILE ARG ALA TYR SEQRES 13 A 389 ARG GLU LEU ALA GLU ALA ARG GLY ALA LYS VAL LEU THR SEQRES 14 A 389 HIS THR ARG VAL GLU ASP PHE ASP ILE SER PRO ASP SER SEQRES 15 A 389 VAL LYS ILE GLU THR ALA ASN GLY SER TYR THR ALA ASP SEQRES 16 A 389 LYS LEU ILE VAL SER MET GLY ALA TRP ASN SER LYS LEU SEQRES 17 A 389 LEU SER LYS LEU ASN LEU ASP ILE PRO LEU GLN PRO TYR SEQRES 18 A 389 ARG GLN VAL VAL GLY PHE PHE GLU SER ASP GLU SER LYS SEQRES 19 A 389 TYR SER ASN ASP ILE ASP PHE PRO GLY PHE MET VAL GLU SEQRES 20 A 389 VAL PRO ASN GLY ILE TYR TYR GLY PHE PRO SER PHE GLY SEQRES 21 A 389 GLY CYS GLY LEU ARG LEU GLY TYR HIS THR PHE GLY GLN SEQRES 22 A 389 LYS ILE ASP PRO ASP THR ILE ASN ARG GLU PHE GLY VAL SEQRES 23 A 389 TYR PRO GLU ASP GLU SER ASN LEU ARG ALA PHE LEU GLU SEQRES 24 A 389 GLU TYR MET PRO GLY ALA ASN GLY GLU LEU LYS ARG GLY SEQRES 25 A 389 ALA VAL CYS MET TYR THR LYS THR LEU ASP GLU HIS PHE SEQRES 26 A 389 ILE ILE ASP LEU HIS PRO GLU HIS SER ASN VAL VAL ILE SEQRES 27 A 389 ALA ALA GLY PHE SER GLY HIS GLY PHE LYS PHE SER SER SEQRES 28 A 389 GLY VAL GLY GLU VAL LEU SER GLN LEU ALA LEU THR GLY SEQRES 29 A 389 LYS THR GLU HIS ASP ILE SER ILE PHE SER ILE ASN ARG SEQRES 30 A 389 PRO ALA LEU LYS GLU SER LEU GLN LYS THR THR ILE SEQRES 1 B 389 SER THR HIS PHE ASP VAL ILE VAL VAL GLY ALA GLY SER SEQRES 2 B 389 MET GLY MET ALA ALA GLY TYR GLN LEU ALA LYS GLN GLY SEQRES 3 B 389 VAL LYS THR LEU LEU VAL ASP ALA PHE ASP PRO PRO HIS SEQRES 4 B 389 THR ASN GLY SER HIS HIS GLY ASP THR ARG ILE ILE ARG SEQRES 5 B 389 HIS ALA TYR GLY GLU GLY ARG GLU TYR VAL PRO LEU ALA SEQRES 6 B 389 LEU ARG SER GLN GLU LEU TRP TYR GLU LEU GLU LYS GLU SEQRES 7 B 389 THR HIS HIS LYS ILE PHE THR LYS THR GLY VAL LEU VAL SEQRES 8 B 389 PHE GLY PRO LYS GLY GLU SER ALA PHE VAL ALA GLU THR SEQRES 9 B 389 MET GLU ALA ALA LYS GLU HIS SER LEU THR VAL ASP LEU SEQRES 10 B 389 LEU GLU GLY ASP GLU ILE ASN LYS ARG TRP PRO GLY ILE SEQRES 11 B 389 THR VAL PRO GLU ASN TYR ASN ALA ILE PHE GLU PRO ASN SEQRES 12 B 389 SER GLY VAL LEU PHE SER GLU ASN CYS ILE ARG ALA TYR SEQRES 13 B 389 ARG GLU LEU ALA GLU ALA ARG GLY ALA LYS VAL LEU THR SEQRES 14 B 389 HIS THR ARG VAL GLU ASP PHE ASP ILE SER PRO ASP SER SEQRES 15 B 389 VAL LYS ILE GLU THR ALA ASN GLY SER TYR THR ALA ASP SEQRES 16 B 389 LYS LEU ILE VAL SER MET GLY ALA TRP ASN SER LYS LEU SEQRES 17 B 389 LEU SER LYS LEU ASN LEU ASP ILE PRO LEU GLN PRO TYR SEQRES 18 B 389 ARG GLN VAL VAL GLY PHE PHE GLU SER ASP GLU SER LYS SEQRES 19 B 389 TYR SER ASN ASP ILE ASP PHE PRO GLY PHE MET VAL GLU SEQRES 20 B 389 VAL PRO ASN GLY ILE TYR TYR GLY PHE PRO SER PHE GLY SEQRES 21 B 389 GLY CYS GLY LEU ARG LEU GLY TYR HIS THR PHE GLY GLN SEQRES 22 B 389 LYS ILE ASP PRO ASP THR ILE ASN ARG GLU PHE GLY VAL SEQRES 23 B 389 TYR PRO GLU ASP GLU SER ASN LEU ARG ALA PHE LEU GLU SEQRES 24 B 389 GLU TYR MET PRO GLY ALA ASN GLY GLU LEU LYS ARG GLY SEQRES 25 B 389 ALA VAL CYS MET TYR THR LYS THR LEU ASP GLU HIS PHE SEQRES 26 B 389 ILE ILE ASP LEU HIS PRO GLU HIS SER ASN VAL VAL ILE SEQRES 27 B 389 ALA ALA GLY PHE SER GLY HIS GLY PHE LYS PHE SER SER SEQRES 28 B 389 GLY VAL GLY GLU VAL LEU SER GLN LEU ALA LEU THR GLY SEQRES 29 B 389 LYS THR GLU HIS ASP ILE SER ILE PHE SER ILE ASN ARG SEQRES 30 B 389 PRO ALA LEU LYS GLU SER LEU GLN LYS THR THR ILE HET FAD A 400 53 HET CL A 405 1 HET FAD B 400 53 HET CL B 406 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CL CHLORIDE ION FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *792(H2 O) HELIX 1 1 GLY A 12 GLN A 25 1 14 HELIX 2 2 GLU A 60 THR A 79 1 20 HELIX 3 3 SER A 98 HIS A 111 1 14 HELIX 4 4 GLY A 120 TRP A 127 1 8 HELIX 5 5 SER A 149 ARG A 163 1 15 HELIX 6 6 MET A 201 ALA A 203 5 3 HELIX 7 7 TRP A 204 LEU A 209 1 6 HELIX 8 8 SER A 210 ASN A 213 5 4 HELIX 9 9 ASP A 231 SER A 236 1 6 HELIX 10 10 ASN A 237 ASP A 240 5 4 HELIX 11 11 PRO A 288 MET A 302 1 15 HELIX 12 12 PRO A 303 ASN A 306 5 4 HELIX 13 13 GLY A 346 LYS A 348 5 3 HELIX 14 14 PHE A 349 GLY A 364 1 16 HELIX 15 15 ILE A 370 SER A 374 5 5 HELIX 16 16 ARG A 377 LYS A 381 5 5 HELIX 17 17 GLY B 12 GLN B 25 1 14 HELIX 18 18 GLY B 58 GLU B 60 5 3 HELIX 19 19 TYR B 61 THR B 79 1 19 HELIX 20 20 SER B 98 HIS B 111 1 14 HELIX 21 21 GLY B 120 TRP B 127 1 8 HELIX 22 22 SER B 149 ARG B 163 1 15 HELIX 23 23 MET B 201 ALA B 203 5 3 HELIX 24 24 TRP B 204 LEU B 209 1 6 HELIX 25 25 SER B 210 LEU B 212 5 3 HELIX 26 26 ASP B 231 SER B 236 1 6 HELIX 27 27 ASN B 237 ASP B 240 5 4 HELIX 28 28 PRO B 288 MET B 302 1 15 HELIX 29 29 PRO B 303 ASN B 306 5 4 HELIX 30 30 GLY B 346 LYS B 348 5 3 HELIX 31 31 PHE B 349 GLY B 364 1 16 HELIX 32 32 ILE B 370 SER B 374 5 5 HELIX 33 33 ARG B 377 LYS B 381 5 5 SHEET 1 A 6 LYS A 166 LEU A 168 0 SHEET 2 A 6 THR A 29 VAL A 32 1 N LEU A 31 O LEU A 168 SHEET 3 A 6 HIS A 3 VAL A 9 1 N VAL A 8 O LEU A 30 SHEET 4 A 6 GLY A 190 VAL A 199 1 O ILE A 198 N VAL A 9 SHEET 5 A 6 VAL A 183 THR A 187 -1 N VAL A 183 O ALA A 194 SHEET 6 A 6 VAL A 173 ILE A 178 -1 N GLU A 174 O GLU A 186 SHEET 1 B 6 LYS A 166 LEU A 168 0 SHEET 2 B 6 THR A 29 VAL A 32 1 N LEU A 31 O LEU A 168 SHEET 3 B 6 HIS A 3 VAL A 9 1 N VAL A 8 O LEU A 30 SHEET 4 B 6 GLY A 190 VAL A 199 1 O ILE A 198 N VAL A 9 SHEET 5 B 6 VAL A 336 ALA A 340 1 O VAL A 337 N VAL A 199 SHEET 6 B 6 ILE A 326 LEU A 329 -1 N ASP A 328 O ILE A 338 SHEET 1 C 3 THR A 48 ILE A 51 0 SHEET 2 C 3 GLY A 145 PHE A 148 -1 O LEU A 147 N ARG A 49 SHEET 3 C 3 PHE A 84 THR A 85 -1 N THR A 85 O VAL A 146 SHEET 1 D 8 ASP A 116 GLU A 119 0 SHEET 2 D 8 TYR A 136 GLU A 141 -1 O PHE A 140 N ASP A 116 SHEET 3 D 8 VAL A 89 PRO A 94 -1 N VAL A 89 O GLU A 141 SHEET 4 D 8 GLY A 243 VAL A 248 1 O GLY A 243 N LEU A 90 SHEET 5 D 8 GLY A 251 PHE A 256 -1 O TYR A 253 N VAL A 246 SHEET 6 D 8 LEU A 264 TYR A 268 -1 O GLY A 267 N TYR A 254 SHEET 7 D 8 GLN A 219 PHE A 228 -1 N PHE A 228 O LEU A 264 SHEET 8 D 8 GLN A 273 LYS A 274 -1 O GLN A 273 N ARG A 222 SHEET 1 E 8 ASP A 116 GLU A 119 0 SHEET 2 E 8 TYR A 136 GLU A 141 -1 O PHE A 140 N ASP A 116 SHEET 3 E 8 VAL A 89 PRO A 94 -1 N VAL A 89 O GLU A 141 SHEET 4 E 8 GLY A 243 VAL A 248 1 O GLY A 243 N LEU A 90 SHEET 5 E 8 GLY A 251 PHE A 256 -1 O TYR A 253 N VAL A 246 SHEET 6 E 8 LEU A 264 TYR A 268 -1 O GLY A 267 N TYR A 254 SHEET 7 E 8 GLN A 219 PHE A 228 -1 N PHE A 228 O LEU A 264 SHEET 8 E 8 LEU A 309 LYS A 319 -1 O CYS A 315 N GLN A 223 SHEET 1 F 6 LYS B 166 LEU B 168 0 SHEET 2 F 6 THR B 29 VAL B 32 1 N LEU B 31 O LEU B 168 SHEET 3 F 6 THR B 2 VAL B 9 1 N VAL B 8 O LEU B 30 SHEET 4 F 6 SER B 191 VAL B 199 1 O ILE B 198 N VAL B 9 SHEET 5 F 6 SER B 182 GLU B 186 -1 N VAL B 183 O ALA B 194 SHEET 6 F 6 PHE B 176 SER B 179 -1 N SER B 179 O SER B 182 SHEET 1 G 6 LYS B 166 LEU B 168 0 SHEET 2 G 6 THR B 29 VAL B 32 1 N LEU B 31 O LEU B 168 SHEET 3 G 6 THR B 2 VAL B 9 1 N VAL B 8 O LEU B 30 SHEET 4 G 6 SER B 191 VAL B 199 1 O ILE B 198 N VAL B 9 SHEET 5 G 6 HIS B 333 ALA B 340 1 O VAL B 337 N LEU B 197 SHEET 6 G 6 ILE B 326 HIS B 330 -1 N ASP B 328 O ILE B 338 SHEET 1 H 3 THR B 48 ILE B 51 0 SHEET 2 H 3 GLY B 145 PHE B 148 -1 O LEU B 147 N ARG B 49 SHEET 3 H 3 PHE B 84 THR B 85 -1 N THR B 85 O VAL B 146 SHEET 1 I 8 ASP B 116 GLU B 119 0 SHEET 2 I 8 TYR B 136 GLU B 141 -1 O PHE B 140 N ASP B 116 SHEET 3 I 8 VAL B 89 PRO B 94 -1 N VAL B 91 O ILE B 139 SHEET 4 I 8 GLY B 243 VAL B 248 1 O GLY B 243 N LEU B 90 SHEET 5 I 8 GLY B 251 PHE B 256 -1 O GLY B 251 N VAL B 248 SHEET 6 I 8 LEU B 264 TYR B 268 -1 O GLY B 267 N TYR B 254 SHEET 7 I 8 GLN B 219 PHE B 228 -1 N PHE B 228 O LEU B 264 SHEET 8 I 8 GLN B 273 LYS B 274 -1 O GLN B 273 N ARG B 222 SHEET 1 J 8 ASP B 116 GLU B 119 0 SHEET 2 J 8 TYR B 136 GLU B 141 -1 O PHE B 140 N ASP B 116 SHEET 3 J 8 VAL B 89 PRO B 94 -1 N VAL B 91 O ILE B 139 SHEET 4 J 8 GLY B 243 VAL B 248 1 O GLY B 243 N LEU B 90 SHEET 5 J 8 GLY B 251 PHE B 256 -1 O GLY B 251 N VAL B 248 SHEET 6 J 8 LEU B 264 TYR B 268 -1 O GLY B 267 N TYR B 254 SHEET 7 J 8 GLN B 219 PHE B 228 -1 N PHE B 228 O LEU B 264 SHEET 8 J 8 LEU B 309 LYS B 319 -1 O CYS B 315 N GLN B 223 SHEET 1 K 2 LEU B 214 ASP B 215 0 SHEET 2 K 2 SER B 383 LEU B 384 -1 O SER B 383 N ASP B 215 CISPEP 1 PRO A 37 PRO A 38 0 0.28 CISPEP 2 PRO B 37 PRO B 38 0 -3.62 SITE 1 AC1 41 GLY A 10 GLY A 12 SER A 13 MET A 14 SITE 2 AC1 41 VAL A 32 ASP A 33 ALA A 34 PHE A 35 SITE 3 AC1 41 HIS A 39 GLY A 42 SER A 43 HIS A 44 SITE 4 AC1 41 ARG A 49 ILE A 50 THR A 171 ARG A 172 SITE 5 AC1 41 VAL A 173 SER A 200 MET A 201 GLY A 202 SITE 6 AC1 41 TRP A 204 LEU A 208 GLN A 223 VAL A 225 SITE 7 AC1 41 TYR A 254 CYS A 315 MET A 316 TYR A 317 SITE 8 AC1 41 PHE A 342 GLY A 344 HIS A 345 GLY A 346 SITE 9 AC1 41 PHE A 347 LYS A 348 HOH A 390 CL A 405 SITE 10 AC1 41 HOH A 406 HOH A 428 HOH A 444 HOH A 462 SITE 11 AC1 41 HOH A 739 SITE 1 AC2 6 TYR A 317 THR A 318 SER A 343 GLY A 344 SITE 2 AC2 6 FAD A 400 HOH A 432 SITE 1 AC3 38 GLY B 10 GLY B 12 SER B 13 MET B 14 SITE 2 AC3 38 VAL B 32 ASP B 33 ALA B 34 PHE B 35 SITE 3 AC3 38 HIS B 39 GLY B 42 SER B 43 HIS B 44 SITE 4 AC3 38 ARG B 49 ILE B 50 THR B 171 ARG B 172 SITE 5 AC3 38 VAL B 173 SER B 200 MET B 201 GLY B 202 SITE 6 AC3 38 TRP B 204 GLN B 223 TYR B 254 CYS B 315 SITE 7 AC3 38 MET B 316 TYR B 317 PHE B 342 GLY B 344 SITE 8 AC3 38 HIS B 345 GLY B 346 PHE B 347 LYS B 348 SITE 9 AC3 38 HOH B 397 HOH B 398 HOH B 399 CL B 406 SITE 10 AC3 38 HOH B 409 HOH B 711 SITE 1 AC4 7 TYR B 317 THR B 318 PHE B 342 SER B 343 SITE 2 AC4 7 GLY B 344 FAD B 400 HOH B 412 CRYST1 72.323 69.251 73.232 90.00 93.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013827 0.000000 0.000889 0.00000 SCALE2 0.000000 0.014440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013683 0.00000