HEADER TRANSFERASE 16-MAR-10 3M6X TITLE MULTI-SITE-SPECIFIC 16S RRNA METHYLTRANSFERASE RSMF FROM THERMUS TITLE 2 THERMOPHILUS IN SPACE GROUP P21212 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RRNA METHYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHA1387; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CP79; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLJ102 KEYWDS RRNA METHYLTRANSFERASE, 5-METHYLCYTIDINE, RSMF, ADOMET, MULTI- KEYWDS 2 SPECIFIC, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI,H.G.L.LARSEN,T.HANSEN,A.RASMUSSEN,A.CADAMBI,S.T.GREGORY, AUTHOR 2 F.KIRPEKAR,G.JOGL REVDAT 6 22-NOV-23 3M6X 1 REMARK REVDAT 5 06-SEP-23 3M6X 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3M6X 1 REMARK REVDAT 3 28-JUL-10 3M6X 1 JRNL REVDAT 2 30-JUN-10 3M6X 1 JRNL REVDAT 1 31-MAR-10 3M6X 0 JRNL AUTH H.DEMIRCI,L.H.LARSEN,T.HANSEN,A.RASMUSSEN,A.CADAMBI, JRNL AUTH 2 S.T.GREGORY,F.KIRPEKAR,G.JOGL JRNL TITL MULTI-SITE-SPECIFIC 16S RRNA METHYLTRANSFERASE RSMF FROM JRNL TITL 2 THERMUS THERMOPHILUS. JRNL REF RNA V. 16 1584 2010 JRNL REFN ISSN 1355-8382 JRNL PMID 20558545 JRNL DOI 10.1261/RNA.2088310 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.760 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 109375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 5569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5740 - 5.1990 1.00 3482 187 0.1780 0.1630 REMARK 3 2 5.1990 - 4.1300 1.00 3514 192 0.1420 0.1600 REMARK 3 3 4.1300 - 3.6090 1.00 3450 225 0.1440 0.1630 REMARK 3 4 3.6090 - 3.2790 1.00 3525 170 0.1580 0.1550 REMARK 3 5 3.2790 - 3.0450 1.00 3476 206 0.1710 0.1960 REMARK 3 6 3.0450 - 2.8650 1.00 3487 187 0.1740 0.1730 REMARK 3 7 2.8650 - 2.7220 1.00 3525 168 0.1720 0.2230 REMARK 3 8 2.7220 - 2.6030 1.00 3525 158 0.1700 0.1720 REMARK 3 9 2.6030 - 2.5030 0.99 3477 181 0.1760 0.1900 REMARK 3 10 2.5030 - 2.4170 1.00 3439 209 0.1680 0.1770 REMARK 3 11 2.4170 - 2.3410 1.00 3497 207 0.1680 0.1970 REMARK 3 12 2.3410 - 2.2740 0.97 3402 184 0.1680 0.2150 REMARK 3 13 2.2740 - 2.2150 0.99 3438 178 0.1750 0.2000 REMARK 3 14 2.2150 - 2.1610 0.98 3471 209 0.1620 0.1980 REMARK 3 15 2.1610 - 2.1120 1.00 3469 181 0.1570 0.1720 REMARK 3 16 2.1120 - 2.0670 1.00 3540 165 0.1510 0.1900 REMARK 3 17 2.0670 - 2.0250 1.00 3435 196 0.1590 0.2030 REMARK 3 18 2.0250 - 1.9870 1.00 3505 211 0.1620 0.1880 REMARK 3 19 1.9870 - 1.9520 0.99 3434 167 0.1660 0.2060 REMARK 3 20 1.9520 - 1.9180 0.99 3483 224 0.1780 0.1950 REMARK 3 21 1.9180 - 1.8880 0.99 3429 172 0.1790 0.2250 REMARK 3 22 1.8880 - 1.8590 0.99 3522 176 0.1810 0.1950 REMARK 3 23 1.8590 - 1.8310 1.00 3451 158 0.1690 0.2150 REMARK 3 24 1.8310 - 1.8050 0.99 3523 161 0.1740 0.2110 REMARK 3 25 1.8050 - 1.7810 0.99 3491 194 0.1760 0.2420 REMARK 3 26 1.7810 - 1.7580 0.99 3420 205 0.1820 0.2060 REMARK 3 27 1.7580 - 1.7360 0.98 3457 181 0.1850 0.2370 REMARK 3 28 1.7360 - 1.7150 0.98 3445 170 0.1950 0.2050 REMARK 3 29 1.7150 - 1.6950 0.99 3410 187 0.2050 0.2380 REMARK 3 30 1.6950 - 1.6760 0.87 3084 160 0.2170 0.2660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 33.53 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31900 REMARK 3 B22 (A**2) : 0.32600 REMARK 3 B33 (A**2) : 1.99300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3684 REMARK 3 ANGLE : 0.936 5011 REMARK 3 CHIRALITY : 0.061 523 REMARK 3 PLANARITY : 0.005 665 REMARK 3 DIHEDRAL : 17.410 1379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 1:47 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8797 -11.5430 26.6150 REMARK 3 T TENSOR REMARK 3 T11: -0.0074 T22: 0.0170 REMARK 3 T33: 0.0582 T12: -0.0022 REMARK 3 T13: 0.0019 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.0294 L22: 0.7733 REMARK 3 L33: 0.1206 L12: 0.1557 REMARK 3 L13: 0.0291 L23: 0.1408 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0169 S13: 0.0001 REMARK 3 S21: -0.0016 S22: -0.0034 S23: -0.1524 REMARK 3 S31: -0.0023 S32: 0.0414 S33: -0.0027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 48:179 REMARK 3 ORIGIN FOR THE GROUP (A): -23.2370 -19.3462 15.0158 REMARK 3 T TENSOR REMARK 3 T11: -0.0023 T22: -0.0253 REMARK 3 T33: 0.0024 T12: 0.0097 REMARK 3 T13: 0.0140 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.2036 L22: 0.2129 REMARK 3 L33: 0.1207 L12: -0.1179 REMARK 3 L13: 0.0216 L23: 0.1012 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: 0.0094 S13: 0.0012 REMARK 3 S21: 0.0039 S22: 0.0030 S23: 0.0459 REMARK 3 S31: -0.0069 S32: 0.0151 S33: 0.0238 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 180:313 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1742 -4.7926 23.9417 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.0569 REMARK 3 T33: 0.0834 T12: 0.0067 REMARK 3 T13: -0.0012 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.2036 L22: 0.1250 REMARK 3 L33: 0.4428 L12: 0.0030 REMARK 3 L13: 0.1856 L23: 0.1366 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: 0.0148 S13: 0.0248 REMARK 3 S21: -0.0012 S22: -0.0247 S23: 0.0045 REMARK 3 S31: -0.0475 S32: -0.0067 S33: 0.0459 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 314:343 REMARK 3 ORIGIN FOR THE GROUP (A): -37.4267 -31.7759 -6.5885 REMARK 3 T TENSOR REMARK 3 T11: 0.0203 T22: 0.0725 REMARK 3 T33: 0.1160 T12: 0.0027 REMARK 3 T13: -0.0400 T23: -0.0685 REMARK 3 L TENSOR REMARK 3 L11: 0.3377 L22: 1.5194 REMARK 3 L33: 0.7054 L12: -0.6469 REMARK 3 L13: 0.1178 L23: 0.2061 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: 0.1425 S13: -0.2155 REMARK 3 S21: -0.0196 S22: -0.1639 S23: 0.2551 REMARK 3 S31: -0.0075 S32: -0.0133 S33: 0.0589 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESSEQ 344:461 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8120 -32.8739 -0.9003 REMARK 3 T TENSOR REMARK 3 T11: 0.0076 T22: 0.0194 REMARK 3 T33: 0.0187 T12: 0.0098 REMARK 3 T13: 0.0044 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 0.6044 L22: 0.3173 REMARK 3 L33: 0.1310 L12: -0.1718 REMARK 3 L13: 0.0778 L23: 0.1572 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: 0.1175 S13: -0.1091 REMARK 3 S21: -0.0085 S22: -0.0249 S23: 0.0340 REMARK 3 S31: -0.0036 S32: 0.0219 S33: -0.0029 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANOMALOUS SCATTERER GROUPS DETAILS. REMARK 3 NUMBER OF ANOMALOUS SCATTERER GROUPS : 1 REMARK 3 ANOMALOUS SCATTERER GROUP : 1 REMARK 3 SELECTION: NAME SE REMARK 3 FP : -8.0000 REMARK 3 FDP : 5.6051 REMARK 4 REMARK 4 3M6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SYSTEM CONSISTING OF A REMARK 200 HORIZONTALLY DEFLECTING AND REMARK 200 FOCUSING CRYSTAL PRECEDED BY A REMARK 200 VERTICALLY FOCUSING MIRROR. REMARK 200 DISTANCE FROM MONOCHROMATOR TO REMARK 200 SAMPLE IS VARIABLE BETWEEN 2.5 REMARK 200 AND 4.5 M. DISTANCE FROM THE REMARK 200 MONOCHROMATOR TO SOURCE IS ~10.5 REMARK 200 M. REMARK 200 OPTICS : SLITS: VARIABLE VERTICAL AND REMARK 200 HORIZONTAL SLITS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110000 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3M6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 160 MM MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 80 MM TRIS-HCL (PH 8.5) AND 24 % W/V PEG4000, MICROBATCH UNDER REMARK 280 OIL, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.89300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.54650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.89300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.54650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 548 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 460 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 237 -97.26 -112.13 REMARK 500 GLU A 335 55.26 -115.63 REMARK 500 ALA A 387 -61.49 -108.71 REMARK 500 ASP A 440 168.71 177.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 465 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FRX RELATED DB: PDB REMARK 900 E. COLI YEBU REMARK 900 RELATED ID: 3M6U RELATED DB: PDB REMARK 900 RELATED ID: 3M6V RELATED DB: PDB REMARK 900 RELATED ID: 3M6W RELATED DB: PDB DBREF 3M6X A 1 456 UNP Q5SII2 Q5SII2_THET8 1 456 SEQADV 3M6X ARG A 457 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6X SER A 458 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6X HIS A 459 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6X HIS A 460 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6X HIS A 461 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6X HIS A 462 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6X HIS A 463 UNP Q5SII2 EXPRESSION TAG SEQADV 3M6X HIS A 464 UNP Q5SII2 EXPRESSION TAG SEQRES 1 A 464 CXM LEU PRO LYS ALA PHE LEU SER ARG MSE ALA GLU LEU SEQRES 2 A 464 LEU GLY GLU GLU PHE PRO ALA PHE LEU LYS ALA LEU THR SEQRES 3 A 464 GLU GLY LYS ARG THR TYR GLY LEU ARG VAL ASN THR LEU SEQRES 4 A 464 LYS LEU PRO PRO GLU ALA PHE GLN ARG ILE SER PRO TRP SEQRES 5 A 464 PRO LEU ARG PRO ILE PRO TRP CYS GLN GLU GLY PHE TYR SEQRES 6 A 464 TYR PRO GLU GLU ALA ARG PRO GLY PRO HIS PRO PHE PHE SEQRES 7 A 464 TYR ALA GLY LEU TYR TYR ILE GLN GLU PRO SER ALA GLN SEQRES 8 A 464 ALA VAL GLY VAL LEU LEU ASP PRO LYS PRO GLY GLU ARG SEQRES 9 A 464 VAL LEU ASP LEU ALA ALA ALA PRO GLY GLY LYS THR THR SEQRES 10 A 464 HIS LEU ALA ALA ARG MSE GLY GLY LYS GLY LEU LEU LEU SEQRES 11 A 464 ALA ASN GLU VAL ASP GLY LYS ARG VAL ARG GLY LEU LEU SEQRES 12 A 464 GLU ASN VAL GLU ARG TRP GLY ALA PRO LEU ALA VAL THR SEQRES 13 A 464 GLN ALA PRO PRO ARG ALA LEU ALA GLU ALA PHE GLY THR SEQRES 14 A 464 TYR PHE HIS ARG VAL LEU LEU ASP ALA PRO CYS SER GLY SEQRES 15 A 464 GLU GLY MSE PHE ARG LYS ASP ARG GLU ALA ALA ARG HIS SEQRES 16 A 464 TRP GLY PRO SER ALA PRO LYS ARG MSE ALA GLU VAL GLN SEQRES 17 A 464 LYS ALA LEU LEU ALA GLN ALA SER ARG LEU LEU GLY PRO SEQRES 18 A 464 GLY GLY VAL LEU VAL TYR SER THR CYS THR PHE ALA PRO SEQRES 19 A 464 GLU GLU ASN GLU GLY VAL VAL ALA HIS PHE LEU LYS ALA SEQRES 20 A 464 HIS PRO GLU PHE ARG LEU GLU ASP ALA ARG LEU HIS PRO SEQRES 21 A 464 LEU PHE ALA PRO GLY VAL PRO GLU TRP GLY GLU GLY ASN SEQRES 22 A 464 PRO GLU LEU LEU LYS THR ALA ARG LEU TRP PRO HIS ARG SEQRES 23 A 464 LEU GLU GLY GLU GLY HIS PHE LEU ALA ARG PHE ARG LYS SEQRES 24 A 464 GLU GLY GLY ALA TRP SER THR PRO ARG LEU GLU ARG PRO SEQRES 25 A 464 SER PRO LEU SER GLN GLU ALA LEU ARG ALA PHE ARG GLY SEQRES 26 A 464 PHE LEU GLU GLU ALA GLY LEU THR LEU GLU GLY PRO VAL SEQRES 27 A 464 LEU ASP ARG ALA GLY HIS LEU TYR LEU LEU PRO GLU GLY SEQRES 28 A 464 LEU PRO THR LEU LEU GLY LEU LYS ALA PRO ALA PRO GLY SEQRES 29 A 464 LEU TYR LEU GLY LYS VAL GLN LYS GLY ARG PHE LEU PRO SEQRES 30 A 464 ALA ARG ALA LEU ALA LEU ALA PHE GLY ALA THR LEU PRO SEQRES 31 A 464 TRP PRO GLU GLY LEU PRO ARG LEU ALA LEU THR PRO GLU SEQRES 32 A 464 ASP PRO ARG ALA LEU ALA PHE ALA THR GLY GLU GLY VAL SEQRES 33 A 464 ALA TRP GLU GLY GLU ASP HIS PRO LEU ALA LEU VAL VAL SEQRES 34 A 464 LEU LYS THR ALA ALA GLY GLU PHE PRO LEU ASP PHE GLY SEQRES 35 A 464 LYS ALA LYS ARG GLY VAL LEU ARG PRO VAL GLY VAL GLY SEQRES 36 A 464 LEU ARG SER HIS HIS HIS HIS HIS HIS MODRES 3M6X CXM A 1 MET N-CARBOXYMETHIONINE MODRES 3M6X MSE A 10 MET SELENOMETHIONINE MODRES 3M6X MSE A 123 MET SELENOMETHIONINE MODRES 3M6X MSE A 185 MET SELENOMETHIONINE MODRES 3M6X MSE A 204 MET SELENOMETHIONINE HET CXM A 1 11 HET MSE A 10 8 HET MSE A 123 8 HET MSE A 185 8 HET MSE A 204 8 HET CL A 465 1 HETNAM CXM N-CARBOXYMETHIONINE HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 CXM C6 H11 N O4 S FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 HOH *665(H2 O) HELIX 1 1 PRO A 3 GLY A 15 1 13 HELIX 2 2 GLU A 17 GLU A 27 1 11 HELIX 3 3 PRO A 42 SER A 50 1 9 HELIX 4 4 HIS A 75 ALA A 80 1 6 HELIX 5 5 PRO A 88 ALA A 90 5 3 HELIX 6 6 GLN A 91 ASP A 98 1 8 HELIX 7 7 GLY A 113 MSE A 123 1 11 HELIX 8 8 ASP A 135 GLY A 150 1 16 HELIX 9 9 PRO A 159 GLY A 168 1 10 HELIX 10 10 GLY A 182 PHE A 186 5 5 HELIX 11 11 ALA A 192 TRP A 196 5 5 HELIX 12 12 SER A 199 ARG A 217 1 19 HELIX 13 13 ALA A 233 GLU A 236 5 4 HELIX 14 14 ASN A 237 HIS A 248 1 12 HELIX 15 15 VAL A 266 GLY A 270 5 5 HELIX 16 16 ASN A 273 LYS A 278 5 6 HELIX 17 17 SER A 316 GLY A 331 1 16 HELIX 18 18 ALA A 378 PHE A 385 1 8 HELIX 19 19 ASP A 404 THR A 412 1 9 SHEET 1 A 4 ARG A 55 ILE A 57 0 SHEET 2 A 4 CYS A 60 TYR A 65 -1 O TYR A 65 N ARG A 55 SHEET 3 A 4 GLY A 33 VAL A 36 -1 N VAL A 36 O GLU A 62 SHEET 4 A 4 TYR A 83 TYR A 84 -1 O TYR A 84 N ARG A 35 SHEET 1 B 7 ALA A 154 THR A 156 0 SHEET 2 B 7 LEU A 128 ASN A 132 1 N ALA A 131 O ALA A 154 SHEET 3 B 7 ARG A 104 ASP A 107 1 N ASP A 107 O ASN A 132 SHEET 4 B 7 PHE A 171 ASP A 177 1 O LEU A 175 N LEU A 106 SHEET 5 B 7 LEU A 219 THR A 229 1 O VAL A 226 N LEU A 176 SHEET 6 B 7 HIS A 292 LYS A 299 -1 O PHE A 297 N LEU A 225 SHEET 7 B 7 PHE A 251 GLU A 254 -1 N GLU A 254 O ARG A 296 SHEET 1 C 8 ALA A 154 THR A 156 0 SHEET 2 C 8 LEU A 128 ASN A 132 1 N ALA A 131 O ALA A 154 SHEET 3 C 8 ARG A 104 ASP A 107 1 N ASP A 107 O ASN A 132 SHEET 4 C 8 PHE A 171 ASP A 177 1 O LEU A 175 N LEU A 106 SHEET 5 C 8 LEU A 219 THR A 229 1 O VAL A 226 N LEU A 176 SHEET 6 C 8 HIS A 292 LYS A 299 -1 O PHE A 297 N LEU A 225 SHEET 7 C 8 ALA A 280 LEU A 282 -1 N LEU A 282 O HIS A 292 SHEET 8 C 8 ALA A 263 PRO A 264 -1 N ALA A 263 O ARG A 281 SHEET 1 D 4 VAL A 338 ARG A 341 0 SHEET 2 D 4 HIS A 344 LEU A 347 -1 O HIS A 344 N ARG A 341 SHEET 3 D 4 LEU A 365 GLN A 371 -1 O LEU A 365 N LEU A 347 SHEET 4 D 4 ARG A 374 PRO A 377 -1 O ARG A 374 N GLN A 371 SHEET 1 E 5 ARG A 397 LEU A 400 0 SHEET 2 E 5 HIS A 423 THR A 432 1 O VAL A 429 N LEU A 398 SHEET 3 E 5 GLY A 435 LYS A 445 -1 O PHE A 437 N LEU A 430 SHEET 4 E 5 VAL A 448 PRO A 451 -1 O ARG A 450 N LYS A 443 SHEET 5 E 5 VAL A 416 ALA A 417 -1 N VAL A 416 O LEU A 449 LINK C CXM A 1 N LEU A 2 1555 1555 1.33 LINK C ARG A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N ALA A 11 1555 1555 1.33 LINK C ARG A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N GLY A 124 1555 1555 1.33 LINK C GLY A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N PHE A 186 1555 1555 1.33 LINK C ARG A 203 N MSE A 204 1555 1555 1.33 LINK C MSE A 204 N ALA A 205 1555 1555 1.33 CISPEP 1 ALA A 111 PRO A 112 0 3.20 SITE 1 AC1 4 ARG A 71 PRO A 72 GLY A 73 HOH A1040 CRYST1 89.786 109.093 50.800 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011138 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019685 0.00000 HETATM 1 N CXM A 1 -0.597 -4.832 20.157 1.00 21.50 N ANISOU 1 N CXM A 1 2284 2486 3398 -134 330 -192 N HETATM 2 CA CXM A 1 -0.453 -3.395 20.122 1.00 20.32 C ANISOU 2 CA CXM A 1 2142 2335 3245 -152 334 -196 C HETATM 3 CB CXM A 1 -0.434 -2.844 18.692 1.00 28.70 C ANISOU 3 CB CXM A 1 3240 3376 4288 -178 401 -201 C HETATM 4 CG CXM A 1 0.267 -1.497 18.686 1.00 37.25 C ANISOU 4 CG CXM A 1 4313 4446 5395 -200 417 -210 C HETATM 5 SD CXM A 1 2.008 -1.665 18.181 1.00 31.38 S ANISOU 5 SD CXM A 1 3515 3666 4742 -216 482 -232 S HETATM 6 CE CXM A 1 1.927 -2.148 16.447 1.00 49.67 C ANISOU 6 CE CXM A 1 5888 5953 7032 -236 568 -238 C HETATM 7 C CXM A 1 -1.632 -2.798 20.911 1.00 17.93 C ANISOU 7 C CXM A 1 1869 2059 2885 -143 279 -184 C HETATM 8 O CXM A 1 -2.729 -3.306 20.845 1.00 18.62 O ANISOU 8 O CXM A 1 1989 2161 2924 -132 263 -175 O HETATM 9 CN CXM A 1 0.558 -5.580 20.224 1.00 21.51 C ANISOU 9 CN CXM A 1 2237 2469 3468 -130 346 -203 C HETATM 10 ON1 CXM A 1 1.693 -5.127 20.430 1.00 19.10 O ANISOU 10 ON1 CXM A 1 1886 2146 3225 -138 356 -215 O HETATM 11 ON2 CXM A 1 0.378 -6.869 19.866 1.00 20.55 O ANISOU 11 ON2 CXM A 1 2120 2344 3344 -119 359 -200 O