HEADER ANTIMICROBIAL PROTEIN 16-MAR-10 3M7J TITLE CRYSTAL STRUCTURE OF THE BACTERIOCIN LLPA FROM PSEUDOMONAS SP. IN TITLE 2 COMPLEX WITH MET-MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTIDACIN L1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BACTERIOCIN LLPA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 216978; SOURCE 4 STRAIN: BW11M1; SOURCE 5 GENE: LLPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOCOT MANNOSE-BINDING LECTIN, BACTERIOCIN, LLPA, PSEUDOMONAS, KEYWDS 2 BACTERIAL TOXIN, SIRAS, PROTEIN-SUGAR COMPLEX, MANNOSE, KEYWDS 3 ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.LORIS,A.GARCIA-PINO REVDAT 5 01-NOV-23 3M7J 1 HETSYN REVDAT 4 29-JUL-20 3M7J 1 COMPND REMARK HETNAM SITE REVDAT 3 08-NOV-17 3M7J 1 REMARK REVDAT 2 10-APR-13 3M7J 1 JRNL VERSN REVDAT 1 23-MAR-11 3M7J 0 JRNL AUTH M.G.GHEQUIRE,A.GARCIA-PINO,E.K.LEBBE,S.SPAEPEN,R.LORIS, JRNL AUTH 2 R.DE MOT JRNL TITL STRUCTURAL DETERMINANTS FOR ACTIVITY AND SPECIFICITY OF THE JRNL TITL 2 BACTERIAL TOXIN LLPA JRNL REF PLOS PATHOG. V. 9 03199 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 23468636 JRNL DOI 10.1371/JOURNAL.PPAT.1003199 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 31880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.740 REMARK 3 FREE R VALUE TEST SET COUNT : 2466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6450 - 5.8727 0.83 1727 160 0.1673 0.1905 REMARK 3 2 5.8727 - 4.6821 0.85 1691 153 0.1495 0.1858 REMARK 3 3 4.6821 - 4.0964 0.86 1711 131 0.1199 0.1589 REMARK 3 4 4.0964 - 3.7246 0.87 1679 136 0.1430 0.1784 REMARK 3 5 3.7246 - 3.4592 0.88 1709 146 0.1512 0.1686 REMARK 3 6 3.4592 - 3.2562 0.88 1699 151 0.1683 0.2251 REMARK 3 7 3.2562 - 3.0938 0.88 1654 138 0.1885 0.2048 REMARK 3 8 3.0938 - 2.9596 0.88 1710 143 0.1934 0.2432 REMARK 3 9 2.9596 - 2.8460 0.88 1643 142 0.1942 0.2433 REMARK 3 10 2.8460 - 2.7481 0.86 1673 148 0.2061 0.2337 REMARK 3 11 2.7481 - 2.6624 0.86 1629 121 0.2024 0.2123 REMARK 3 12 2.6624 - 2.5864 0.84 1598 129 0.2024 0.2356 REMARK 3 13 2.5864 - 2.5185 0.86 1656 112 0.2111 0.2715 REMARK 3 14 2.5185 - 2.4572 0.84 1551 142 0.2187 0.2867 REMARK 3 15 2.4572 - 2.4014 0.80 1526 121 0.2216 0.2637 REMARK 3 16 2.4014 - 2.3504 0.81 1549 142 0.2259 0.3048 REMARK 3 17 2.3504 - 2.3034 0.82 1537 132 0.2468 0.2866 REMARK 3 18 2.3034 - 2.2600 0.80 1472 119 0.2375 0.2952 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 50.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.720 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.11300 REMARK 3 B22 (A**2) : -12.62600 REMARK 3 B33 (A**2) : 0.51300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4167 REMARK 3 ANGLE : 0.837 5709 REMARK 3 CHIRALITY : 0.056 620 REMARK 3 PLANARITY : 0.003 749 REMARK 3 DIHEDRAL : 14.769 1413 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:127) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5258 7.2158 8.6378 REMARK 3 T TENSOR REMARK 3 T11: 0.3173 T22: 0.1839 REMARK 3 T33: 0.1842 T12: -0.0137 REMARK 3 T13: 0.0136 T23: 0.0716 REMARK 3 L TENSOR REMARK 3 L11: 1.7716 L22: 3.0893 REMARK 3 L33: 0.6925 L12: 0.9999 REMARK 3 L13: 0.4139 L23: 0.7264 REMARK 3 S TENSOR REMARK 3 S11: 0.2141 S12: -0.0741 S13: -0.1831 REMARK 3 S21: 0.5969 S22: -0.1964 S23: -0.0146 REMARK 3 S31: 0.2926 S32: 0.1322 S33: -0.0053 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 146:275) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4315 30.9802 -1.6545 REMARK 3 T TENSOR REMARK 3 T11: 0.1868 T22: 0.2022 REMARK 3 T33: 0.3134 T12: -0.0406 REMARK 3 T13: 0.0089 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: -0.1707 L22: 1.7455 REMARK 3 L33: 1.0492 L12: -0.4326 REMARK 3 L13: -0.2687 L23: -0.0369 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: 0.0115 S13: -0.0260 REMARK 3 S21: 0.0477 S22: -0.1407 S23: 0.5007 REMARK 3 S31: -0.1179 S32: 0.0320 S33: 0.0609 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 4:127) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0012 -16.0142 4.2702 REMARK 3 T TENSOR REMARK 3 T11: 0.1627 T22: 0.7077 REMARK 3 T33: 0.3330 T12: 0.0435 REMARK 3 T13: 0.0125 T23: 0.2543 REMARK 3 L TENSOR REMARK 3 L11: 1.7058 L22: 0.7423 REMARK 3 L33: 2.1403 L12: -0.4527 REMARK 3 L13: -0.6023 L23: -0.1511 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: 0.3722 S13: -0.1390 REMARK 3 S21: -0.1439 S22: 0.2842 S23: 0.2638 REMARK 3 S31: 0.0120 S32: -1.0733 S33: -0.3581 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 146:275) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3234 -12.8871 3.3678 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.2185 REMARK 3 T33: 0.1915 T12: 0.0409 REMARK 3 T13: 0.0480 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.0797 L22: 0.9179 REMARK 3 L33: 0.8778 L12: 0.6205 REMARK 3 L13: -0.0979 L23: -0.9418 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: -0.0495 S13: 0.1495 REMARK 3 S21: -0.1911 S22: 0.1023 S23: -0.1312 REMARK 3 S31: -0.1140 S32: -0.0804 S33: -0.0741 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3M7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8073 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 19.645 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : 0.12400 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : 0.54200 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3M7H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE, 1.3M SODIUM ACETATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 74.48650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.60050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.48650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.60050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 PHE A 276 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 LEU B 70 REMARK 465 ARG B 71 REMARK 465 ASN B 72 REMARK 465 PHE B 276 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 55 CG1 CG2 REMARK 470 GLU A 60 CD OE1 OE2 REMARK 470 ARG A 71 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 73 CB CG CD CE NZ REMARK 470 LYS A 74 CB CG CD CE NZ REMARK 470 TYR A 90 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 93 CD NE CZ NH1 NH2 REMARK 470 ASN A 106 CG OD1 ND2 REMARK 470 ARG A 198 CZ NH1 NH2 REMARK 470 LYS A 244 CE NZ REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 259 CD1 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 ARG B 4 CB CG CD NE CZ NH1 NH2 REMARK 470 ILE B 7 CD1 REMARK 470 SER B 24 OG REMARK 470 ALA B 25 CB REMARK 470 LYS B 37 NZ REMARK 470 VAL B 57 CG1 CG2 REMARK 470 ALA B 58 CB REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 GLN B 61 CG CD OE1 NE2 REMARK 470 ILE B 68 CD1 REMARK 470 LYS B 73 CB CG CD CE NZ REMARK 470 LYS B 74 CB CG CD CE NZ REMARK 470 ALA B 75 CB REMARK 470 TYR B 90 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 90 OH REMARK 470 ARG B 93 CB CG CD NE CZ NH1 NH2 REMARK 470 THR B 104 CB OG1 CG2 REMARK 470 ASN B 106 CB CG OD1 ND2 REMARK 470 ASN B 110 CB CG OD1 ND2 REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 ARG B 257 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 261 CE NZ REMARK 470 ASP B 265 CB CG OD1 OD2 REMARK 470 GLN B 266 CB CG CD OE1 NE2 REMARK 470 LYS B 267 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 34 -2.22 76.30 REMARK 500 TYR A 83 -73.14 61.43 REMARK 500 ASP A 270 46.38 -78.92 REMARK 500 ASP B 43 1.60 -69.56 REMARK 500 TYR B 83 -69.30 61.97 REMARK 500 ASP B 270 47.10 -76.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M7H RELATED DB: PDB REMARK 900 SUGAR-FREE FORM OF LLPA DBREF 3M7J A 1 276 UNP Q8GEJ9 Q8GEJ9_9PSED 1 276 DBREF 3M7J B 1 276 UNP Q8GEJ9 Q8GEJ9_9PSED 1 276 SEQRES 1 A 276 MET ALA GLY ARG THR ARG ILE PRO PHE ASN GLY VAL GLY SEQRES 2 A 276 THR SER VAL LEU PRO ALA TYR GLN THR LEU SER ALA GLY SEQRES 3 A 276 GLN TYR LEU LEU SER PRO ASN GLN ARG PHE LYS LEU LEU SEQRES 4 A 276 LEU GLN GLY ASP GLY ASN LEU VAL ILE GLN ASP ASN GLY SEQRES 5 A 276 ALA THR VAL TRP VAL ALA ASN GLU GLN GLN PRO PHE SER SEQRES 6 A 276 SER THR ILE PRO LEU ARG ASN LYS LYS ALA PRO LEU ALA SEQRES 7 A 276 PHE TYR VAL GLN TYR GLY ALA PHE LEU ASP ASP TYR SER SEQRES 8 A 276 ARG ARG ARG VAL TRP LEU THR ASP ASN SER THR PHE THR SEQRES 9 A 276 SER ASN ASP GLN TRP ASN ARG THR HIS LEU VAL LEU GLN SEQRES 10 A 276 ASP ASP GLY ASN ILE VAL LEU VAL ASP SER LEU ALA LEU SEQRES 11 A 276 TRP ASN GLY THR PRO ALA ILE PRO LEU VAL PRO GLY ALA SEQRES 12 A 276 ILE ASP SER LEU LEU LEU ALA PRO GLY SER GLU LEU VAL SEQRES 13 A 276 GLN GLY VAL VAL TYR GLY ALA GLY ALA SER LYS LEU VAL SEQRES 14 A 276 PHE GLN GLY ASP GLY ASN LEU VAL ALA TYR GLY PRO ASN SEQRES 15 A 276 GLY ALA ALA THR TRP ASN ALA GLY THR GLN GLY LYS GLY SEQRES 16 A 276 ALA VAL ARG ALA VAL PHE GLN GLY ASP GLY ASN LEU VAL SEQRES 17 A 276 VAL TYR GLY ALA GLY ASN ALA VAL LEU TRP HIS SER HIS SEQRES 18 A 276 THR GLY GLY HIS ALA SER ALA VAL LEU ARG LEU GLN ALA SEQRES 19 A 276 ASN GLY SER ILE ALA ILE LEU ASP GLU LYS PRO VAL TRP SEQRES 20 A 276 ALA ARG PHE GLY PHE GLN PRO THR TYR ARG HIS ILE ARG SEQRES 21 A 276 LYS ILE ASN PRO ASP GLN LYS PRO ILE ASP ILE TRP THR SEQRES 22 A 276 TRP HIS PHE SEQRES 1 B 276 MET ALA GLY ARG THR ARG ILE PRO PHE ASN GLY VAL GLY SEQRES 2 B 276 THR SER VAL LEU PRO ALA TYR GLN THR LEU SER ALA GLY SEQRES 3 B 276 GLN TYR LEU LEU SER PRO ASN GLN ARG PHE LYS LEU LEU SEQRES 4 B 276 LEU GLN GLY ASP GLY ASN LEU VAL ILE GLN ASP ASN GLY SEQRES 5 B 276 ALA THR VAL TRP VAL ALA ASN GLU GLN GLN PRO PHE SER SEQRES 6 B 276 SER THR ILE PRO LEU ARG ASN LYS LYS ALA PRO LEU ALA SEQRES 7 B 276 PHE TYR VAL GLN TYR GLY ALA PHE LEU ASP ASP TYR SER SEQRES 8 B 276 ARG ARG ARG VAL TRP LEU THR ASP ASN SER THR PHE THR SEQRES 9 B 276 SER ASN ASP GLN TRP ASN ARG THR HIS LEU VAL LEU GLN SEQRES 10 B 276 ASP ASP GLY ASN ILE VAL LEU VAL ASP SER LEU ALA LEU SEQRES 11 B 276 TRP ASN GLY THR PRO ALA ILE PRO LEU VAL PRO GLY ALA SEQRES 12 B 276 ILE ASP SER LEU LEU LEU ALA PRO GLY SER GLU LEU VAL SEQRES 13 B 276 GLN GLY VAL VAL TYR GLY ALA GLY ALA SER LYS LEU VAL SEQRES 14 B 276 PHE GLN GLY ASP GLY ASN LEU VAL ALA TYR GLY PRO ASN SEQRES 15 B 276 GLY ALA ALA THR TRP ASN ALA GLY THR GLN GLY LYS GLY SEQRES 16 B 276 ALA VAL ARG ALA VAL PHE GLN GLY ASP GLY ASN LEU VAL SEQRES 17 B 276 VAL TYR GLY ALA GLY ASN ALA VAL LEU TRP HIS SER HIS SEQRES 18 B 276 THR GLY GLY HIS ALA SER ALA VAL LEU ARG LEU GLN ALA SEQRES 19 B 276 ASN GLY SER ILE ALA ILE LEU ASP GLU LYS PRO VAL TRP SEQRES 20 B 276 ALA ARG PHE GLY PHE GLN PRO THR TYR ARG HIS ILE ARG SEQRES 21 B 276 LYS ILE ASN PRO ASP GLN LYS PRO ILE ASP ILE TRP THR SEQRES 22 B 276 TRP HIS PHE HET MMA A 277 13 HET MMA B 277 13 HETNAM MMA METHYL ALPHA-D-MANNOPYRANOSIDE HETSYN MMA O1-METHYL-MANNOSE; METHYL ALPHA-D-MANNOSIDE; METHYL D- HETSYN 2 MMA MANNOSIDE; METHYL MANNOSIDE FORMUL 3 MMA 2(C7 H14 O6) FORMUL 5 HOH *113(H2 O) HELIX 1 1 TYR A 90 ARG A 92 5 3 HELIX 2 2 ASP A 107 ARG A 111 1 5 HELIX 3 3 ALA A 212 ASN A 214 5 3 HELIX 4 4 TYR B 90 ARG B 93 5 4 HELIX 5 5 ASP B 107 ARG B 111 1 5 HELIX 6 6 ALA B 212 ASN B 214 5 3 SHEET 1 A 2 ILE A 7 PRO A 8 0 SHEET 2 A 2 GLN A 21 THR A 22 1 O THR A 22 N ILE A 7 SHEET 1 B 6 VAL A 16 LEU A 17 0 SHEET 2 B 6 THR A 112 LEU A 116 -1 O LEU A 114 N LEU A 17 SHEET 3 B 6 ILE A 122 ASN A 132 -1 O VAL A 125 N HIS A 113 SHEET 4 B 6 ILE A 238 ALA A 248 -1 O VAL A 246 N LEU A 124 SHEET 5 B 6 VAL A 229 LEU A 232 -1 N ARG A 231 O ALA A 239 SHEET 6 B 6 LEU A 147 LEU A 149 -1 N LEU A 147 O LEU A 232 SHEET 1 C 4 TYR A 28 LEU A 30 0 SHEET 2 C 4 PHE A 36 LEU A 40 -1 O LEU A 38 N LEU A 29 SHEET 3 C 4 LEU A 46 ASP A 50 -1 O VAL A 47 N LEU A 39 SHEET 4 C 4 ALA A 53 VAL A 57 -1 O ALA A 53 N ASP A 50 SHEET 1 D 4 SER A 65 PRO A 69 0 SHEET 2 D 4 ARG A 94 THR A 98 -1 O LEU A 97 N SER A 66 SHEET 3 D 4 ALA A 85 ASP A 89 -1 N LEU A 87 O TRP A 96 SHEET 4 D 4 ALA A 78 VAL A 81 -1 N TYR A 80 O PHE A 86 SHEET 1 E 4 SER A 153 LEU A 155 0 SHEET 2 E 4 ARG A 198 PHE A 201 -1 O ALA A 199 N LEU A 155 SHEET 3 E 4 LEU A 207 TYR A 210 -1 O TYR A 210 N ARG A 198 SHEET 4 E 4 VAL A 216 HIS A 219 -1 O TRP A 218 N VAL A 209 SHEET 1 F 4 VAL A 160 ALA A 163 0 SHEET 2 F 4 SER A 166 PHE A 170 -1 O LEU A 168 N TYR A 161 SHEET 3 F 4 LEU A 176 TYR A 179 -1 O TYR A 179 N LYS A 167 SHEET 4 F 4 ALA A 185 ASN A 188 -1 O TRP A 187 N ALA A 178 SHEET 1 G 2 HIS A 258 ILE A 262 0 SHEET 2 G 2 PRO A 268 TRP A 274 -1 O THR A 273 N ILE A 259 SHEET 1 H 2 ILE B 7 PRO B 8 0 SHEET 2 H 2 GLN B 21 THR B 22 1 O THR B 22 N ILE B 7 SHEET 1 I 6 VAL B 16 LEU B 17 0 SHEET 2 I 6 THR B 112 LEU B 116 -1 O LEU B 114 N LEU B 17 SHEET 3 I 6 ILE B 122 ASN B 132 -1 O VAL B 125 N HIS B 113 SHEET 4 I 6 ILE B 238 ALA B 248 -1 O LYS B 244 N ASP B 126 SHEET 5 I 6 VAL B 229 LEU B 232 -1 N ARG B 231 O ALA B 239 SHEET 6 I 6 LEU B 147 LEU B 149 -1 N LEU B 147 O LEU B 232 SHEET 1 J 4 TYR B 28 LEU B 30 0 SHEET 2 J 4 PHE B 36 LEU B 40 -1 O LEU B 38 N LEU B 29 SHEET 3 J 4 LEU B 46 ASP B 50 -1 O VAL B 47 N LEU B 39 SHEET 4 J 4 ALA B 53 VAL B 57 -1 O ALA B 53 N ASP B 50 SHEET 1 K 4 SER B 65 ILE B 68 0 SHEET 2 K 4 ARG B 94 THR B 98 -1 O LEU B 97 N SER B 66 SHEET 3 K 4 ALA B 85 ASP B 89 -1 N LEU B 87 O TRP B 96 SHEET 4 K 4 ALA B 78 VAL B 81 -1 N TYR B 80 O PHE B 86 SHEET 1 L 4 SER B 153 GLU B 154 0 SHEET 2 L 4 ARG B 198 PHE B 201 -1 O PHE B 201 N SER B 153 SHEET 3 L 4 LEU B 207 TYR B 210 -1 O TYR B 210 N ARG B 198 SHEET 4 L 4 VAL B 216 HIS B 219 -1 O LEU B 217 N VAL B 209 SHEET 1 M 4 TYR B 161 ALA B 163 0 SHEET 2 M 4 SER B 166 PHE B 170 -1 O LEU B 168 N TYR B 161 SHEET 3 M 4 LEU B 176 TYR B 179 -1 O TYR B 179 N LYS B 167 SHEET 4 M 4 ALA B 185 ASN B 188 -1 O THR B 186 N ALA B 178 SHEET 1 N 2 HIS B 258 ILE B 262 0 SHEET 2 N 2 PRO B 268 TRP B 274 -1 O ILE B 269 N LYS B 261 CRYST1 148.973 153.201 33.914 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006713 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006527 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029486 0.00000