data_3M93 # _entry.id 3M93 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3M93 pdb_00003m93 10.2210/pdb3m93/pdb RCSB RCSB058262 ? ? WWPDB D_1000058262 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-20 2 'Structure model' 1 1 2011-10-12 3 'Structure model' 1 2 2011-12-14 4 'Structure model' 1 3 2023-09-06 5 'Structure model' 2 0 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Non-polymer description' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' entity # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 5 'Structure model' '_chem_comp.formula' 8 5 'Structure model' '_chem_comp.formula_weight' 9 5 'Structure model' '_entity.formula_weight' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3M93 _pdbx_database_status.recvd_initial_deposition_date 2010-03-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3M94 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, W.' 1 'Berkeley Structural Genomics Center (BSGC)' 2 # _citation.id primary _citation.title 'Structural basis for nematode eIF4E binding an m2,2,7G-Cap and its implications for translation initiation.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 39 _citation.page_first 8820 _citation.page_last 8832 _citation.year 2011 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21965542 _citation.pdbx_database_id_DOI 10.1093/nar/gkr650 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, W.' 1 ? primary 'Jankowska-Anyszka, M.' 2 ? primary 'Piecyk, K.' 3 ? primary 'Dickson, L.' 4 ? primary 'Wallace, A.' 5 ? primary 'Niedzwiecka, A.' 6 ? primary 'Stepinski, J.' 7 ? primary 'Stolarski, R.' 8 ? primary 'Darzynkiewicz, E.' 9 ? primary 'Kieft, J.' 10 ? primary 'Zhao, R.' 11 ? primary 'Jones, D.N.' 12 ? primary 'Davis, R.E.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Translation initiation factor 4E' 22169.328 1 ? ? 'UNP residues 49-236' ? 2 polymer syn 'Eukaryotic translation initiation factor 4E-binding protein 1' 2144.564 1 ? ? 'UNP residues 51-67' ? 3 non-polymer syn "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" 458.235 1 ? ? ? ? 4 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'eIF4E-binding protein 1, 4E-BP1, Phosphorylated heat- and acid-stable protein regulated by insulin 1, PHAS-I' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWL VVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEP IRYEVHKDSSVRTGSMVKPRIVIPSKDNR ; ;MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWL VVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEP IRYEVHKDSSVRTGSMVKPRIVIPSKDNR ; A ? 2 'polypeptide(L)' no no RIIYDRKFLMECRNSPV RIIYDRKFLMECRNSPV C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" M7G 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 HIS n 1 4 PRO n 1 5 LEU n 1 6 GLN n 1 7 CYS n 1 8 HIS n 1 9 TRP n 1 10 ALA n 1 11 LEU n 1 12 TRP n 1 13 TYR n 1 14 LEU n 1 15 LYS n 1 16 ALA n 1 17 ASP n 1 18 ARG n 1 19 SER n 1 20 LYS n 1 21 ASP n 1 22 TRP n 1 23 GLU n 1 24 ASP n 1 25 CYS n 1 26 LEU n 1 27 LYS n 1 28 GLN n 1 29 VAL n 1 30 ALA n 1 31 VAL n 1 32 PHE n 1 33 ASP n 1 34 THR n 1 35 VAL n 1 36 GLU n 1 37 ASP n 1 38 PHE n 1 39 TRP n 1 40 SER n 1 41 LEU n 1 42 TYR n 1 43 ASN n 1 44 HIS n 1 45 ILE n 1 46 GLN n 1 47 ALA n 1 48 ALA n 1 49 SER n 1 50 GLY n 1 51 LEU n 1 52 THR n 1 53 TRP n 1 54 GLY n 1 55 SER n 1 56 ASP n 1 57 TYR n 1 58 TYR n 1 59 LEU n 1 60 PHE n 1 61 LYS n 1 62 GLU n 1 63 GLY n 1 64 ILE n 1 65 LYS n 1 66 PRO n 1 67 MET n 1 68 TRP n 1 69 GLU n 1 70 ASP n 1 71 GLU n 1 72 ASN n 1 73 ASN n 1 74 VAL n 1 75 LYS n 1 76 GLY n 1 77 GLY n 1 78 ARG n 1 79 TRP n 1 80 LEU n 1 81 VAL n 1 82 VAL n 1 83 VAL n 1 84 ASP n 1 85 LYS n 1 86 GLN n 1 87 LYS n 1 88 ARG n 1 89 ALA n 1 90 GLN n 1 91 LEU n 1 92 LEU n 1 93 ASP n 1 94 HIS n 1 95 TYR n 1 96 TRP n 1 97 LEU n 1 98 GLU n 1 99 LEU n 1 100 LEU n 1 101 MET n 1 102 ALA n 1 103 ILE n 1 104 ILE n 1 105 GLY n 1 106 GLU n 1 107 GLN n 1 108 PHE n 1 109 GLU n 1 110 ASP n 1 111 ASN n 1 112 GLY n 1 113 GLU n 1 114 TYR n 1 115 ILE n 1 116 CYS n 1 117 GLY n 1 118 ALA n 1 119 VAL n 1 120 VAL n 1 121 ASN n 1 122 VAL n 1 123 ARG n 1 124 GLN n 1 125 LYS n 1 126 GLY n 1 127 ASP n 1 128 LYS n 1 129 VAL n 1 130 SER n 1 131 LEU n 1 132 TRP n 1 133 THR n 1 134 ARG n 1 135 ASP n 1 136 SER n 1 137 LEU n 1 138 LYS n 1 139 ASP n 1 140 ASP n 1 141 VAL n 1 142 ASN n 1 143 LEU n 1 144 ARG n 1 145 ILE n 1 146 GLY n 1 147 GLN n 1 148 ILE n 1 149 LEU n 1 150 LYS n 1 151 ALA n 1 152 LYS n 1 153 LEU n 1 154 GLU n 1 155 ILE n 1 156 PRO n 1 157 ASP n 1 158 THR n 1 159 GLU n 1 160 PRO n 1 161 ILE n 1 162 ARG n 1 163 TYR n 1 164 GLU n 1 165 VAL n 1 166 HIS n 1 167 LYS n 1 168 ASP n 1 169 SER n 1 170 SER n 1 171 VAL n 1 172 ARG n 1 173 THR n 1 174 GLY n 1 175 SER n 1 176 MET n 1 177 VAL n 1 178 LYS n 1 179 PRO n 1 180 ARG n 1 181 ILE n 1 182 VAL n 1 183 ILE n 1 184 PRO n 1 185 SER n 1 186 LYS n 1 187 ASP n 1 188 ASN n 1 189 ARG n 2 1 ARG n 2 2 ILE n 2 3 ILE n 2 4 TYR n 2 5 ASP n 2 6 ARG n 2 7 LYS n 2 8 PHE n 2 9 LEU n 2 10 MET n 2 11 GLU n 2 12 CYS n 2 13 ARG n 2 14 ASN n 2 15 SER n 2 16 PRO n 2 17 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Pig roundworm' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Ascaris suum' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'pig roundworm' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ascaris suum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6253 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Rosetta _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET30a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M7G non-polymer . "7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE" ? 'C11 H18 N5 O11 P2 1' 458.235 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 48 48 MET MET A . n A 1 2 ARG 2 49 49 ARG ARG A . n A 1 3 HIS 3 50 50 HIS HIS A . n A 1 4 PRO 4 51 51 PRO PRO A . n A 1 5 LEU 5 52 52 LEU LEU A . n A 1 6 GLN 6 53 53 GLN GLN A . n A 1 7 CYS 7 54 54 CYS CYS A . n A 1 8 HIS 8 55 55 HIS HIS A . n A 1 9 TRP 9 56 56 TRP TRP A . n A 1 10 ALA 10 57 57 ALA ALA A . n A 1 11 LEU 11 58 58 LEU LEU A . n A 1 12 TRP 12 59 59 TRP TRP A . n A 1 13 TYR 13 60 60 TYR TYR A . n A 1 14 LEU 14 61 61 LEU LEU A . n A 1 15 LYS 15 62 62 LYS LYS A . n A 1 16 ALA 16 63 63 ALA ALA A . n A 1 17 ASP 17 64 64 ASP ASP A . n A 1 18 ARG 18 65 65 ARG ARG A . n A 1 19 SER 19 66 66 SER SER A . n A 1 20 LYS 20 67 67 LYS LYS A . n A 1 21 ASP 21 68 68 ASP ASP A . n A 1 22 TRP 22 69 69 TRP TRP A . n A 1 23 GLU 23 70 70 GLU GLU A . n A 1 24 ASP 24 71 71 ASP ASP A . n A 1 25 CYS 25 72 72 CYS CYS A . n A 1 26 LEU 26 73 73 LEU LEU A . n A 1 27 LYS 27 74 74 LYS LYS A . n A 1 28 GLN 28 75 75 GLN GLN A . n A 1 29 VAL 29 76 76 VAL VAL A . n A 1 30 ALA 30 77 77 ALA ALA A . n A 1 31 VAL 31 78 78 VAL VAL A . n A 1 32 PHE 32 79 79 PHE PHE A . n A 1 33 ASP 33 80 80 ASP ASP A . n A 1 34 THR 34 81 81 THR THR A . n A 1 35 VAL 35 82 82 VAL VAL A . n A 1 36 GLU 36 83 83 GLU GLU A . n A 1 37 ASP 37 84 84 ASP ASP A . n A 1 38 PHE 38 85 85 PHE PHE A . n A 1 39 TRP 39 86 86 TRP TRP A . n A 1 40 SER 40 87 87 SER SER A . n A 1 41 LEU 41 88 88 LEU LEU A . n A 1 42 TYR 42 89 89 TYR TYR A . n A 1 43 ASN 43 90 90 ASN ASN A . n A 1 44 HIS 44 91 91 HIS HIS A . n A 1 45 ILE 45 92 92 ILE ILE A . n A 1 46 GLN 46 93 93 GLN GLN A . n A 1 47 ALA 47 94 94 ALA ALA A . n A 1 48 ALA 48 95 95 ALA ALA A . n A 1 49 SER 49 96 96 SER SER A . n A 1 50 GLY 50 97 97 GLY GLY A . n A 1 51 LEU 51 98 98 LEU LEU A . n A 1 52 THR 52 99 99 THR THR A . n A 1 53 TRP 53 100 100 TRP TRP A . n A 1 54 GLY 54 101 101 GLY GLY A . n A 1 55 SER 55 102 102 SER SER A . n A 1 56 ASP 56 103 103 ASP ASP A . n A 1 57 TYR 57 104 104 TYR TYR A . n A 1 58 TYR 58 105 105 TYR TYR A . n A 1 59 LEU 59 106 106 LEU LEU A . n A 1 60 PHE 60 107 107 PHE PHE A . n A 1 61 LYS 61 108 108 LYS LYS A . n A 1 62 GLU 62 109 109 GLU GLU A . n A 1 63 GLY 63 110 110 GLY GLY A . n A 1 64 ILE 64 111 111 ILE ILE A . n A 1 65 LYS 65 112 112 LYS LYS A . n A 1 66 PRO 66 113 113 PRO PRO A . n A 1 67 MET 67 114 114 MET MET A . n A 1 68 TRP 68 115 115 TRP TRP A . n A 1 69 GLU 69 116 116 GLU GLU A . n A 1 70 ASP 70 117 117 ASP ASP A . n A 1 71 GLU 71 118 118 GLU GLU A . n A 1 72 ASN 72 119 119 ASN ASN A . n A 1 73 ASN 73 120 120 ASN ASN A . n A 1 74 VAL 74 121 121 VAL VAL A . n A 1 75 LYS 75 122 122 LYS LYS A . n A 1 76 GLY 76 123 123 GLY GLY A . n A 1 77 GLY 77 124 124 GLY GLY A . n A 1 78 ARG 78 125 125 ARG ARG A . n A 1 79 TRP 79 126 126 TRP TRP A . n A 1 80 LEU 80 127 127 LEU LEU A . n A 1 81 VAL 81 128 128 VAL VAL A . n A 1 82 VAL 82 129 129 VAL VAL A . n A 1 83 VAL 83 130 130 VAL VAL A . n A 1 84 ASP 84 131 131 ASP ASP A . n A 1 85 LYS 85 132 132 LYS LYS A . n A 1 86 GLN 86 133 133 GLN GLN A . n A 1 87 LYS 87 134 134 LYS LYS A . n A 1 88 ARG 88 135 135 ARG ARG A . n A 1 89 ALA 89 136 136 ALA ALA A . n A 1 90 GLN 90 137 137 GLN GLN A . n A 1 91 LEU 91 138 138 LEU LEU A . n A 1 92 LEU 92 139 139 LEU LEU A . n A 1 93 ASP 93 140 140 ASP ASP A . n A 1 94 HIS 94 141 141 HIS HIS A . n A 1 95 TYR 95 142 142 TYR TYR A . n A 1 96 TRP 96 143 143 TRP TRP A . n A 1 97 LEU 97 144 144 LEU LEU A . n A 1 98 GLU 98 145 145 GLU GLU A . n A 1 99 LEU 99 146 146 LEU LEU A . n A 1 100 LEU 100 147 147 LEU LEU A . n A 1 101 MET 101 148 148 MET MET A . n A 1 102 ALA 102 149 149 ALA ALA A . n A 1 103 ILE 103 150 150 ILE ILE A . n A 1 104 ILE 104 151 151 ILE ILE A . n A 1 105 GLY 105 152 152 GLY GLY A . n A 1 106 GLU 106 153 153 GLU GLU A . n A 1 107 GLN 107 154 154 GLN GLN A . n A 1 108 PHE 108 155 155 PHE PHE A . n A 1 109 GLU 109 156 156 GLU GLU A . n A 1 110 ASP 110 157 157 ASP ASP A . n A 1 111 ASN 111 158 158 ASN ASN A . n A 1 112 GLY 112 159 159 GLY GLY A . n A 1 113 GLU 113 160 160 GLU GLU A . n A 1 114 TYR 114 161 161 TYR TYR A . n A 1 115 ILE 115 162 162 ILE ILE A . n A 1 116 CYS 116 163 163 CYS CYS A . n A 1 117 GLY 117 164 164 GLY GLY A . n A 1 118 ALA 118 165 165 ALA ALA A . n A 1 119 VAL 119 166 166 VAL VAL A . n A 1 120 VAL 120 167 167 VAL VAL A . n A 1 121 ASN 121 168 168 ASN ASN A . n A 1 122 VAL 122 169 169 VAL VAL A . n A 1 123 ARG 123 170 170 ARG ARG A . n A 1 124 GLN 124 171 171 GLN GLN A . n A 1 125 LYS 125 172 172 LYS LYS A . n A 1 126 GLY 126 173 173 GLY GLY A . n A 1 127 ASP 127 174 174 ASP ASP A . n A 1 128 LYS 128 175 175 LYS LYS A . n A 1 129 VAL 129 176 176 VAL VAL A . n A 1 130 SER 130 177 177 SER SER A . n A 1 131 LEU 131 178 178 LEU LEU A . n A 1 132 TRP 132 179 179 TRP TRP A . n A 1 133 THR 133 180 180 THR THR A . n A 1 134 ARG 134 181 181 ARG ARG A . n A 1 135 ASP 135 182 182 ASP ASP A . n A 1 136 SER 136 183 183 SER SER A . n A 1 137 LEU 137 184 184 LEU LEU A . n A 1 138 LYS 138 185 185 LYS LYS A . n A 1 139 ASP 139 186 186 ASP ASP A . n A 1 140 ASP 140 187 187 ASP ASP A . n A 1 141 VAL 141 188 188 VAL VAL A . n A 1 142 ASN 142 189 189 ASN ASN A . n A 1 143 LEU 143 190 190 LEU LEU A . n A 1 144 ARG 144 191 191 ARG ARG A . n A 1 145 ILE 145 192 192 ILE ILE A . n A 1 146 GLY 146 193 193 GLY GLY A . n A 1 147 GLN 147 194 194 GLN GLN A . n A 1 148 ILE 148 195 195 ILE ILE A . n A 1 149 LEU 149 196 196 LEU LEU A . n A 1 150 LYS 150 197 197 LYS LYS A . n A 1 151 ALA 151 198 198 ALA ALA A . n A 1 152 LYS 152 199 199 LYS LYS A . n A 1 153 LEU 153 200 200 LEU LEU A . n A 1 154 GLU 154 201 201 GLU GLU A . n A 1 155 ILE 155 202 202 ILE ILE A . n A 1 156 PRO 156 203 203 PRO PRO A . n A 1 157 ASP 157 204 204 ASP ASP A . n A 1 158 THR 158 205 205 THR THR A . n A 1 159 GLU 159 206 206 GLU GLU A . n A 1 160 PRO 160 207 207 PRO PRO A . n A 1 161 ILE 161 208 208 ILE ILE A . n A 1 162 ARG 162 209 209 ARG ARG A . n A 1 163 TYR 163 210 210 TYR TYR A . n A 1 164 GLU 164 211 211 GLU GLU A . n A 1 165 VAL 165 212 212 VAL VAL A . n A 1 166 HIS 166 213 213 HIS HIS A . n A 1 167 LYS 167 214 ? ? ? A . n A 1 168 ASP 168 215 ? ? ? A . n A 1 169 SER 169 216 ? ? ? A . n A 1 170 SER 170 217 ? ? ? A . n A 1 171 VAL 171 218 ? ? ? A . n A 1 172 ARG 172 219 ? ? ? A . n A 1 173 THR 173 220 220 THR ALA A . n A 1 174 GLY 174 221 221 GLY GLY A . n A 1 175 SER 175 222 222 SER SER A . n A 1 176 MET 176 223 223 MET MET A . n A 1 177 VAL 177 224 224 VAL VAL A . n A 1 178 LYS 178 225 225 LYS LYS A . n A 1 179 PRO 179 226 226 PRO PRO A . n A 1 180 ARG 180 227 227 ARG ARG A . n A 1 181 ILE 181 228 228 ILE ILE A . n A 1 182 VAL 182 229 229 VAL VAL A . n A 1 183 ILE 183 230 230 ILE ILE A . n A 1 184 PRO 184 231 231 PRO PRO A . n A 1 185 SER 185 232 232 SER SER A . n A 1 186 LYS 186 233 233 LYS LYS A . n A 1 187 ASP 187 234 ? ? ? A . n A 1 188 ASN 188 235 ? ? ? A . n A 1 189 ARG 189 236 ? ? ? A . n B 2 1 ARG 1 1 1 ARG ARG C . n B 2 2 ILE 2 2 2 ILE ILE C . n B 2 3 ILE 3 3 3 ILE ILE C . n B 2 4 TYR 4 4 4 TYR TYR C . n B 2 5 ASP 5 5 5 ASP ASP C . n B 2 6 ARG 6 6 6 ARG ARG C . n B 2 7 LYS 7 7 7 LYS LYS C . n B 2 8 PHE 8 8 8 PHE PHE C . n B 2 9 LEU 9 9 9 LEU LEU C . n B 2 10 MET 10 10 10 MET MET C . n B 2 11 GLU 11 11 11 GLU GLU C . n B 2 12 CYS 12 12 12 CYS CYS C . n B 2 13 ARG 13 13 13 ARG ARG C . n B 2 14 ASN 14 14 ? ? ? C . n B 2 15 SER 15 15 ? ? ? C . n B 2 16 PRO 16 16 ? ? ? C . n B 2 17 VAL 17 17 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 M7G 1 1 1 M7G M7G A . D 4 HOH 1 2 2 HOH HOH A . D 4 HOH 2 237 1 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 62 ? CG ? A LYS 15 CG 2 1 Y 1 A LYS 62 ? CD ? A LYS 15 CD 3 1 Y 1 A LYS 62 ? CE ? A LYS 15 CE 4 1 Y 1 A LYS 62 ? NZ ? A LYS 15 NZ 5 1 Y 1 A ARG 65 ? CG ? A ARG 18 CG 6 1 Y 1 A ARG 65 ? CD ? A ARG 18 CD 7 1 Y 1 A ARG 65 ? NE ? A ARG 18 NE 8 1 Y 1 A ARG 65 ? CZ ? A ARG 18 CZ 9 1 Y 1 A ARG 65 ? NH1 ? A ARG 18 NH1 10 1 Y 1 A ARG 65 ? NH2 ? A ARG 18 NH2 11 1 Y 1 A LYS 67 ? CG ? A LYS 20 CG 12 1 Y 1 A LYS 67 ? CD ? A LYS 20 CD 13 1 Y 1 A LYS 67 ? CE ? A LYS 20 CE 14 1 Y 1 A LYS 67 ? NZ ? A LYS 20 NZ 15 1 Y 1 A LYS 112 ? CG ? A LYS 65 CG 16 1 Y 1 A LYS 112 ? CD ? A LYS 65 CD 17 1 Y 1 A LYS 112 ? CE ? A LYS 65 CE 18 1 Y 1 A LYS 112 ? NZ ? A LYS 65 NZ 19 1 Y 1 A LYS 122 ? CG ? A LYS 75 CG 20 1 Y 1 A LYS 122 ? CD ? A LYS 75 CD 21 1 Y 1 A LYS 122 ? CE ? A LYS 75 CE 22 1 Y 1 A LYS 122 ? NZ ? A LYS 75 NZ 23 1 Y 1 A LYS 132 ? CG ? A LYS 85 CG 24 1 Y 1 A LYS 132 ? CD ? A LYS 85 CD 25 1 Y 1 A LYS 132 ? CE ? A LYS 85 CE 26 1 Y 1 A LYS 132 ? NZ ? A LYS 85 NZ 27 1 Y 1 A LYS 134 ? CG ? A LYS 87 CG 28 1 Y 1 A LYS 134 ? CD ? A LYS 87 CD 29 1 Y 1 A LYS 134 ? CE ? A LYS 87 CE 30 1 Y 1 A LYS 134 ? NZ ? A LYS 87 NZ 31 1 Y 1 A GLN 171 ? CG ? A GLN 124 CG 32 1 Y 1 A GLN 171 ? CD ? A GLN 124 CD 33 1 Y 1 A GLN 171 ? OE1 ? A GLN 124 OE1 34 1 Y 1 A GLN 171 ? NE2 ? A GLN 124 NE2 35 1 Y 1 A LYS 172 ? CG ? A LYS 125 CG 36 1 Y 1 A LYS 172 ? CD ? A LYS 125 CD 37 1 Y 1 A LYS 172 ? CE ? A LYS 125 CE 38 1 Y 1 A LYS 172 ? NZ ? A LYS 125 NZ 39 1 Y 1 A LYS 185 ? CG ? A LYS 138 CG 40 1 Y 1 A LYS 185 ? CD ? A LYS 138 CD 41 1 Y 1 A LYS 185 ? CE ? A LYS 138 CE 42 1 Y 1 A LYS 185 ? NZ ? A LYS 138 NZ 43 1 Y 1 A GLU 206 ? CG ? A GLU 159 CG 44 1 Y 1 A GLU 206 ? CD ? A GLU 159 CD 45 1 Y 1 A GLU 206 ? OE1 ? A GLU 159 OE1 46 1 Y 1 A GLU 206 ? OE2 ? A GLU 159 OE2 47 1 Y 1 A THR 220 ? OG1 ? A THR 173 OG1 48 1 Y 1 A THR 220 ? CG2 ? A THR 173 CG2 49 1 Y 1 A VAL 224 ? CG1 ? A VAL 177 CG1 50 1 Y 1 A VAL 224 ? CG2 ? A VAL 177 CG2 51 1 Y 1 A LYS 225 ? CG ? A LYS 178 CG 52 1 Y 1 A LYS 225 ? CD ? A LYS 178 CD 53 1 Y 1 A LYS 225 ? CE ? A LYS 178 CE 54 1 Y 1 A LYS 225 ? NZ ? A LYS 178 NZ 55 1 Y 1 A LYS 233 ? CG ? A LYS 186 CG 56 1 Y 1 A LYS 233 ? CD ? A LYS 186 CD 57 1 Y 1 A LYS 233 ? CE ? A LYS 186 CE 58 1 Y 1 A LYS 233 ? NZ ? A LYS 186 NZ 59 1 Y 1 C LYS 7 ? CG ? B LYS 7 CG 60 1 Y 1 C LYS 7 ? CD ? B LYS 7 CD 61 1 Y 1 C LYS 7 ? CE ? B LYS 7 CE 62 1 Y 1 C LYS 7 ? NZ ? B LYS 7 NZ 63 1 Y 1 C GLU 11 ? CG ? B GLU 11 CG 64 1 Y 1 C GLU 11 ? CD ? B GLU 11 CD 65 1 Y 1 C GLU 11 ? OE1 ? B GLU 11 OE1 66 1 Y 1 C GLU 11 ? OE2 ? B GLU 11 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal d*TREK 'data scaling' . ? 1 PHASES phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 d*TREK 'data reduction' . ? 4 # _cell.entry_id 3M93 _cell.length_a 104.620 _cell.length_b 104.620 _cell.length_c 47.220 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3M93 _symmetry.space_group_name_H-M 'I 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3M93 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_percent_sol 53.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '20% MMG PEG 2000, 0.2 M (NH4)2SO4, and 100 mM Na-Critate, pH 5.6, VAPOR DIFFUSION, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2009-02-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 3M93 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 2.90 _reflns.d_resolution_low 36.99 _reflns.d_resolution_high 2.9 _reflns.number_obs 5719 _reflns.number_all ? _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rsym_value 0.113 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 2.974 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3M93 _refine.ls_number_reflns_obs 5122 _refine.ls_number_reflns_all 5719 _refine.pdbx_ls_sigma_I 2.9 _refine.pdbx_ls_sigma_F 1.8 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.92 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 98.56 _refine.ls_R_factor_obs 0.24469 _refine.ls_R_factor_all 0.298 _refine.ls_R_factor_R_work 0.23934 _refine.ls_R_factor_R_free 0.29372 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.7 _refine.ls_number_reflns_R_free 550 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.906 _refine.correlation_coeff_Fo_to_Fc_free 0.861 _refine.B_iso_mean 43.926 _refine.aniso_B[1][1] -2.00 _refine.aniso_B[2][2] -2.00 _refine.aniso_B[3][3] 4.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2V8W _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.491 _refine.overall_SU_ML 0.392 _refine.overall_SU_B 21.211 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1541 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 1572 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 14.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 1612 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.353 1.954 ? 2202 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.940 5.000 ? 190 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.062 23.718 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.155 15.000 ? 247 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.467 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.093 0.200 ? 236 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 1235 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.551 1.500 ? 958 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.035 2.000 ? 1527 'X-RAY DIFFRACTION' ? r_scbond_it 1.045 3.000 ? 654 'X-RAY DIFFRACTION' ? r_scangle_it 1.770 4.500 ? 675 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 2.974 _refine_ls_shell.number_reflns_R_work 374 _refine_ls_shell.R_factor_R_work 0.357 _refine_ls_shell.percent_reflns_obs 98.30 _refine_ls_shell.R_factor_R_free 0.311 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3M93 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3M93 _struct.title 'Complex crystal structure of Ascaris suum eIF4E-3 with m7G cap' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3M93 _struct_keywords.pdbx_keywords TRANSLATION _struct_keywords.text 'eIF4E, Berkeley Structural Genomics Center, BSGC, TRANSLATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q6PKX2_ASCSU Q6PKX2 1 ;RHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWLV VVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNLRIGQILKAKLEIPDTEPI RYEVHKDSSVRTGSMVKPRIVIPSKDNR ; 49 ? 2 UNP 4EBP1_HUMAN Q13541 2 RIIYDRKFLMECRNSPV 51 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3M93 A 2 ? 189 ? Q6PKX2 49 ? 236 ? 49 236 2 2 3M93 C 1 ? 17 ? Q13541 51 ? 67 ? 1 17 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3M93 _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q6PKX2 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 48 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1940 ? 1 MORE -10 ? 1 'SSA (A^2)' 9880 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TRP A 22 ? ASP A 24 ? TRP A 69 ASP A 71 5 ? 3 HELX_P HELX_P2 2 VAL A 35 ? ILE A 45 ? VAL A 82 ILE A 92 1 ? 11 HELX_P HELX_P3 3 LYS A 87 ? GLY A 105 ? LYS A 134 GLY A 152 1 ? 19 HELX_P HELX_P4 4 PHE A 108 ? GLU A 113 ? PHE A 155 GLU A 160 5 ? 6 HELX_P HELX_P5 5 LYS A 138 ? GLU A 154 ? LYS A 185 GLU A 201 1 ? 17 HELX_P HELX_P6 6 ASP B 5 ? CYS B 12 ? ASP C 5 CYS C 12 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 183 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 230 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 184 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 231 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.37 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 26 ? THR A 34 ? LEU A 73 THR A 81 A 2 PRO A 4 ? LEU A 14 ? PRO A 51 LEU A 61 A 3 ASP A 56 ? LYS A 61 ? ASP A 103 LYS A 108 A 4 ILE A 115 ? ASN A 121 ? ILE A 162 ASN A 168 A 5 ASP A 127 ? THR A 133 ? ASP A 174 THR A 180 A 6 GLY A 77 ? VAL A 83 ? GLY A 124 VAL A 130 A 7 ILE A 161 ? VAL A 165 ? ILE A 208 VAL A 212 A 8 ILE A 181 ? ILE A 183 ? ILE A 228 ILE A 230 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 33 ? O ASP A 80 N LEU A 5 ? N LEU A 52 A 2 3 N TRP A 12 ? N TRP A 59 O TYR A 58 ? O TYR A 105 A 3 4 N TYR A 57 ? N TYR A 104 O VAL A 120 ? O VAL A 167 A 4 5 N CYS A 116 ? N CYS A 163 O TRP A 132 ? O TRP A 179 A 5 6 O ASP A 127 ? O ASP A 174 N VAL A 83 ? N VAL A 130 A 6 7 N LEU A 80 ? N LEU A 127 O ARG A 162 ? O ARG A 209 A 7 8 N ILE A 161 ? N ILE A 208 O ILE A 183 ? O ILE A 230 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id M7G _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE M7G A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 TRP A 22 ? TRP A 69 . ? 1_555 ? 2 AC1 5 MET A 67 ? MET A 114 . ? 1_555 ? 3 AC1 5 TRP A 68 ? TRP A 115 . ? 1_555 ? 4 AC1 5 GLU A 69 ? GLU A 116 . ? 1_555 ? 5 AC1 5 ARG A 123 ? ARG A 170 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 186 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 186 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CB _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 186 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 81.40 _pdbx_validate_rmsd_angle.angle_target_value 110.60 _pdbx_validate_rmsd_angle.angle_deviation -29.20 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.80 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 80 ? ? -150.23 20.45 2 1 PHE A 155 ? ? -97.98 31.86 3 1 GLU A 156 ? ? 58.39 -141.82 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'Berkeley Structural Genomics Center' _pdbx_SG_project.initial_of_center BSGC # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 214 ? A LYS 167 2 1 Y 1 A ASP 215 ? A ASP 168 3 1 Y 1 A SER 216 ? A SER 169 4 1 Y 1 A SER 217 ? A SER 170 5 1 Y 1 A VAL 218 ? A VAL 171 6 1 Y 1 A ARG 219 ? A ARG 172 7 1 Y 1 A ASP 234 ? A ASP 187 8 1 Y 1 A ASN 235 ? A ASN 188 9 1 Y 1 A ARG 236 ? A ARG 189 10 1 Y 1 C ASN 14 ? B ASN 14 11 1 Y 1 C SER 15 ? B SER 15 12 1 Y 1 C PRO 16 ? B PRO 16 13 1 Y 1 C VAL 17 ? B VAL 17 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 M7G PA P N N 230 M7G O1A O N N 231 M7G O2A O N N 232 M7G O3A O N N 233 M7G "O5'" O N N 234 M7G PB P N N 235 M7G O1B O N N 236 M7G O2B O N N 237 M7G O3B O N N 238 M7G "C5'" C N N 239 M7G "C4'" C N R 240 M7G "O4'" O N N 241 M7G "C3'" C N S 242 M7G "O3'" O N N 243 M7G "C2'" C N R 244 M7G "O2'" O N N 245 M7G "C1'" C N R 246 M7G N9 N Y N 247 M7G C8 C Y N 248 M7G N7 N Y N 249 M7G CM7 C N N 250 M7G C5 C Y N 251 M7G C6 C N N 252 M7G O6 O N N 253 M7G N1 N N N 254 M7G C2 C N N 255 M7G N2 N N N 256 M7G N3 N N N 257 M7G C4 C Y N 258 M7G HOA2 H N N 259 M7G HOB2 H N N 260 M7G HOB3 H N N 261 M7G "H5'1" H N N 262 M7G "H5'2" H N N 263 M7G "H4'" H N N 264 M7G "H3'" H N N 265 M7G "HO3'" H N N 266 M7G "H2'" H N N 267 M7G "HO2'" H N N 268 M7G "H1'" H N N 269 M7G H81 H N N 270 M7G HM71 H N N 271 M7G HM72 H N N 272 M7G HM73 H N N 273 M7G HN1 H N N 274 M7G HN21 H N N 275 M7G HN22 H N N 276 MET N N N N 277 MET CA C N S 278 MET C C N N 279 MET O O N N 280 MET CB C N N 281 MET CG C N N 282 MET SD S N N 283 MET CE C N N 284 MET OXT O N N 285 MET H H N N 286 MET H2 H N N 287 MET HA H N N 288 MET HB2 H N N 289 MET HB3 H N N 290 MET HG2 H N N 291 MET HG3 H N N 292 MET HE1 H N N 293 MET HE2 H N N 294 MET HE3 H N N 295 MET HXT H N N 296 PHE N N N N 297 PHE CA C N S 298 PHE C C N N 299 PHE O O N N 300 PHE CB C N N 301 PHE CG C Y N 302 PHE CD1 C Y N 303 PHE CD2 C Y N 304 PHE CE1 C Y N 305 PHE CE2 C Y N 306 PHE CZ C Y N 307 PHE OXT O N N 308 PHE H H N N 309 PHE H2 H N N 310 PHE HA H N N 311 PHE HB2 H N N 312 PHE HB3 H N N 313 PHE HD1 H N N 314 PHE HD2 H N N 315 PHE HE1 H N N 316 PHE HE2 H N N 317 PHE HZ H N N 318 PHE HXT H N N 319 PRO N N N N 320 PRO CA C N S 321 PRO C C N N 322 PRO O O N N 323 PRO CB C N N 324 PRO CG C N N 325 PRO CD C N N 326 PRO OXT O N N 327 PRO H H N N 328 PRO HA H N N 329 PRO HB2 H N N 330 PRO HB3 H N N 331 PRO HG2 H N N 332 PRO HG3 H N N 333 PRO HD2 H N N 334 PRO HD3 H N N 335 PRO HXT H N N 336 SER N N N N 337 SER CA C N S 338 SER C C N N 339 SER O O N N 340 SER CB C N N 341 SER OG O N N 342 SER OXT O N N 343 SER H H N N 344 SER H2 H N N 345 SER HA H N N 346 SER HB2 H N N 347 SER HB3 H N N 348 SER HG H N N 349 SER HXT H N N 350 THR N N N N 351 THR CA C N S 352 THR C C N N 353 THR O O N N 354 THR CB C N R 355 THR OG1 O N N 356 THR CG2 C N N 357 THR OXT O N N 358 THR H H N N 359 THR H2 H N N 360 THR HA H N N 361 THR HB H N N 362 THR HG1 H N N 363 THR HG21 H N N 364 THR HG22 H N N 365 THR HG23 H N N 366 THR HXT H N N 367 TRP N N N N 368 TRP CA C N S 369 TRP C C N N 370 TRP O O N N 371 TRP CB C N N 372 TRP CG C Y N 373 TRP CD1 C Y N 374 TRP CD2 C Y N 375 TRP NE1 N Y N 376 TRP CE2 C Y N 377 TRP CE3 C Y N 378 TRP CZ2 C Y N 379 TRP CZ3 C Y N 380 TRP CH2 C Y N 381 TRP OXT O N N 382 TRP H H N N 383 TRP H2 H N N 384 TRP HA H N N 385 TRP HB2 H N N 386 TRP HB3 H N N 387 TRP HD1 H N N 388 TRP HE1 H N N 389 TRP HE3 H N N 390 TRP HZ2 H N N 391 TRP HZ3 H N N 392 TRP HH2 H N N 393 TRP HXT H N N 394 TYR N N N N 395 TYR CA C N S 396 TYR C C N N 397 TYR O O N N 398 TYR CB C N N 399 TYR CG C Y N 400 TYR CD1 C Y N 401 TYR CD2 C Y N 402 TYR CE1 C Y N 403 TYR CE2 C Y N 404 TYR CZ C Y N 405 TYR OH O N N 406 TYR OXT O N N 407 TYR H H N N 408 TYR H2 H N N 409 TYR HA H N N 410 TYR HB2 H N N 411 TYR HB3 H N N 412 TYR HD1 H N N 413 TYR HD2 H N N 414 TYR HE1 H N N 415 TYR HE2 H N N 416 TYR HH H N N 417 TYR HXT H N N 418 VAL N N N N 419 VAL CA C N S 420 VAL C C N N 421 VAL O O N N 422 VAL CB C N N 423 VAL CG1 C N N 424 VAL CG2 C N N 425 VAL OXT O N N 426 VAL H H N N 427 VAL H2 H N N 428 VAL HA H N N 429 VAL HB H N N 430 VAL HG11 H N N 431 VAL HG12 H N N 432 VAL HG13 H N N 433 VAL HG21 H N N 434 VAL HG22 H N N 435 VAL HG23 H N N 436 VAL HXT H N N 437 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 M7G PA O1A doub N N 218 M7G PA O2A sing N N 219 M7G PA O3A sing N N 220 M7G PA "O5'" sing N N 221 M7G O2A HOA2 sing N N 222 M7G O3A PB sing N N 223 M7G "O5'" "C5'" sing N N 224 M7G PB O1B doub N N 225 M7G PB O2B sing N N 226 M7G PB O3B sing N N 227 M7G O2B HOB2 sing N N 228 M7G O3B HOB3 sing N N 229 M7G "C5'" "C4'" sing N N 230 M7G "C5'" "H5'1" sing N N 231 M7G "C5'" "H5'2" sing N N 232 M7G "C4'" "O4'" sing N N 233 M7G "C4'" "C3'" sing N N 234 M7G "C4'" "H4'" sing N N 235 M7G "O4'" "C1'" sing N N 236 M7G "C3'" "O3'" sing N N 237 M7G "C3'" "C2'" sing N N 238 M7G "C3'" "H3'" sing N N 239 M7G "O3'" "HO3'" sing N N 240 M7G "C2'" "O2'" sing N N 241 M7G "C2'" "C1'" sing N N 242 M7G "C2'" "H2'" sing N N 243 M7G "O2'" "HO2'" sing N N 244 M7G "C1'" N9 sing N N 245 M7G "C1'" "H1'" sing N N 246 M7G N9 C8 sing Y N 247 M7G N9 C4 sing Y N 248 M7G C8 N7 doub Y N 249 M7G C8 H81 sing N N 250 M7G N7 CM7 sing N N 251 M7G N7 C5 sing Y N 252 M7G CM7 HM71 sing N N 253 M7G CM7 HM72 sing N N 254 M7G CM7 HM73 sing N N 255 M7G C5 C6 sing N N 256 M7G C5 C4 doub Y N 257 M7G C6 O6 doub N N 258 M7G C6 N1 sing N N 259 M7G N1 C2 sing N N 260 M7G N1 HN1 sing N N 261 M7G C2 N2 sing N N 262 M7G C2 N3 doub N N 263 M7G N2 HN21 sing N N 264 M7G N2 HN22 sing N N 265 M7G N3 C4 sing N N 266 MET N CA sing N N 267 MET N H sing N N 268 MET N H2 sing N N 269 MET CA C sing N N 270 MET CA CB sing N N 271 MET CA HA sing N N 272 MET C O doub N N 273 MET C OXT sing N N 274 MET CB CG sing N N 275 MET CB HB2 sing N N 276 MET CB HB3 sing N N 277 MET CG SD sing N N 278 MET CG HG2 sing N N 279 MET CG HG3 sing N N 280 MET SD CE sing N N 281 MET CE HE1 sing N N 282 MET CE HE2 sing N N 283 MET CE HE3 sing N N 284 MET OXT HXT sing N N 285 PHE N CA sing N N 286 PHE N H sing N N 287 PHE N H2 sing N N 288 PHE CA C sing N N 289 PHE CA CB sing N N 290 PHE CA HA sing N N 291 PHE C O doub N N 292 PHE C OXT sing N N 293 PHE CB CG sing N N 294 PHE CB HB2 sing N N 295 PHE CB HB3 sing N N 296 PHE CG CD1 doub Y N 297 PHE CG CD2 sing Y N 298 PHE CD1 CE1 sing Y N 299 PHE CD1 HD1 sing N N 300 PHE CD2 CE2 doub Y N 301 PHE CD2 HD2 sing N N 302 PHE CE1 CZ doub Y N 303 PHE CE1 HE1 sing N N 304 PHE CE2 CZ sing Y N 305 PHE CE2 HE2 sing N N 306 PHE CZ HZ sing N N 307 PHE OXT HXT sing N N 308 PRO N CA sing N N 309 PRO N CD sing N N 310 PRO N H sing N N 311 PRO CA C sing N N 312 PRO CA CB sing N N 313 PRO CA HA sing N N 314 PRO C O doub N N 315 PRO C OXT sing N N 316 PRO CB CG sing N N 317 PRO CB HB2 sing N N 318 PRO CB HB3 sing N N 319 PRO CG CD sing N N 320 PRO CG HG2 sing N N 321 PRO CG HG3 sing N N 322 PRO CD HD2 sing N N 323 PRO CD HD3 sing N N 324 PRO OXT HXT sing N N 325 SER N CA sing N N 326 SER N H sing N N 327 SER N H2 sing N N 328 SER CA C sing N N 329 SER CA CB sing N N 330 SER CA HA sing N N 331 SER C O doub N N 332 SER C OXT sing N N 333 SER CB OG sing N N 334 SER CB HB2 sing N N 335 SER CB HB3 sing N N 336 SER OG HG sing N N 337 SER OXT HXT sing N N 338 THR N CA sing N N 339 THR N H sing N N 340 THR N H2 sing N N 341 THR CA C sing N N 342 THR CA CB sing N N 343 THR CA HA sing N N 344 THR C O doub N N 345 THR C OXT sing N N 346 THR CB OG1 sing N N 347 THR CB CG2 sing N N 348 THR CB HB sing N N 349 THR OG1 HG1 sing N N 350 THR CG2 HG21 sing N N 351 THR CG2 HG22 sing N N 352 THR CG2 HG23 sing N N 353 THR OXT HXT sing N N 354 TRP N CA sing N N 355 TRP N H sing N N 356 TRP N H2 sing N N 357 TRP CA C sing N N 358 TRP CA CB sing N N 359 TRP CA HA sing N N 360 TRP C O doub N N 361 TRP C OXT sing N N 362 TRP CB CG sing N N 363 TRP CB HB2 sing N N 364 TRP CB HB3 sing N N 365 TRP CG CD1 doub Y N 366 TRP CG CD2 sing Y N 367 TRP CD1 NE1 sing Y N 368 TRP CD1 HD1 sing N N 369 TRP CD2 CE2 doub Y N 370 TRP CD2 CE3 sing Y N 371 TRP NE1 CE2 sing Y N 372 TRP NE1 HE1 sing N N 373 TRP CE2 CZ2 sing Y N 374 TRP CE3 CZ3 doub Y N 375 TRP CE3 HE3 sing N N 376 TRP CZ2 CH2 doub Y N 377 TRP CZ2 HZ2 sing N N 378 TRP CZ3 CH2 sing Y N 379 TRP CZ3 HZ3 sing N N 380 TRP CH2 HH2 sing N N 381 TRP OXT HXT sing N N 382 TYR N CA sing N N 383 TYR N H sing N N 384 TYR N H2 sing N N 385 TYR CA C sing N N 386 TYR CA CB sing N N 387 TYR CA HA sing N N 388 TYR C O doub N N 389 TYR C OXT sing N N 390 TYR CB CG sing N N 391 TYR CB HB2 sing N N 392 TYR CB HB3 sing N N 393 TYR CG CD1 doub Y N 394 TYR CG CD2 sing Y N 395 TYR CD1 CE1 sing Y N 396 TYR CD1 HD1 sing N N 397 TYR CD2 CE2 doub Y N 398 TYR CD2 HD2 sing N N 399 TYR CE1 CZ doub Y N 400 TYR CE1 HE1 sing N N 401 TYR CE2 CZ sing Y N 402 TYR CE2 HE2 sing N N 403 TYR CZ OH sing N N 404 TYR OH HH sing N N 405 TYR OXT HXT sing N N 406 VAL N CA sing N N 407 VAL N H sing N N 408 VAL N H2 sing N N 409 VAL CA C sing N N 410 VAL CA CB sing N N 411 VAL CA HA sing N N 412 VAL C O doub N N 413 VAL C OXT sing N N 414 VAL CB CG1 sing N N 415 VAL CB CG2 sing N N 416 VAL CB HB sing N N 417 VAL CG1 HG11 sing N N 418 VAL CG1 HG12 sing N N 419 VAL CG1 HG13 sing N N 420 VAL CG2 HG21 sing N N 421 VAL CG2 HG22 sing N N 422 VAL CG2 HG23 sing N N 423 VAL OXT HXT sing N N 424 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2V8W _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 3M93 _atom_sites.fract_transf_matrix[1][1] 0.009558 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009558 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021177 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_