HEADER TRANSLATION 19-MAR-10 3M94 TITLE COMPLEX CRYSTAL STRUCTURE OF ASCARIS SUUM EIF4E-3 WITH M2,2,7G CAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR 4E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 49-236; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN COMPND 8 1; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: UNP RESIDUES 51-67; COMPND 11 SYNONYM: EIF4E-BINDING PROTEIN 1, 4E-BP1, PHOSPHORYLATED HEAT- AND COMPND 12 ACID-STABLE PROTEIN REGULATED BY INSULIN 1, PHAS-I; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASCARIS SUUM; SOURCE 3 ORGANISM_COMMON: PIG ROUNDWORM; SOURCE 4 ORGANISM_TAXID: 6253; SOURCE 5 STRAIN: ASCARIS SUUM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS EIF4E, BERKELEY STRUCTURAL GENOMICS CENTER, BSGC, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR W.LIU,BERKELEY STRUCTURAL GENOMICS CENTER (BSGC) REVDAT 4 06-SEP-23 3M94 1 REMARK SEQADV REVDAT 3 14-DEC-11 3M94 1 JRNL REVDAT 2 12-OCT-11 3M94 1 JRNL REVDAT 1 20-JUL-11 3M94 0 JRNL AUTH W.LIU,M.JANKOWSKA-ANYSZKA,K.PIECYK,L.DICKSON,A.WALLACE, JRNL AUTH 2 A.NIEDZWIECKA,J.STEPINSKI,R.STOLARSKI,E.DARZYNKIEWICZ, JRNL AUTH 3 J.KIEFT,R.ZHAO,D.N.JONES,R.E.DAVIS JRNL TITL STRUCTURAL BASIS FOR NEMATODE EIF4E BINDING AN M2,2,7G-CAP JRNL TITL 2 AND ITS IMPLICATIONS FOR TRANSLATION INITIATION. JRNL REF NUCLEIC ACIDS RES. V. 39 8820 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21965542 JRNL DOI 10.1093/NAR/GKR650 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1632 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 980 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1558 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : -1.28000 REMARK 3 B33 (A**2) : 2.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.344 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1632 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2222 ; 1.266 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 190 ; 5.326 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;34.119 ;23.718 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;14.506 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.214 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 237 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1233 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 959 ; 0.532 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1534 ; 0.990 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 673 ; 1.639 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 688 ; 2.482 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3442 31.1416 21.2971 REMARK 3 T TENSOR REMARK 3 T11: 0.2630 T22: 0.1500 REMARK 3 T33: 0.2217 T12: 0.0078 REMARK 3 T13: 0.0770 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 2.9018 L22: 2.9678 REMARK 3 L33: 7.6313 L12: -2.6338 REMARK 3 L13: -2.6045 L23: 0.8921 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: 0.0940 S13: -0.0768 REMARK 3 S21: 0.1704 S22: -0.0132 S23: 0.2205 REMARK 3 S31: 0.0575 S32: -0.2981 S33: -0.0128 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5850 20.3185 7.5596 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.1826 REMARK 3 T33: 0.1093 T12: 0.0115 REMARK 3 T13: -0.0545 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 5.1529 L22: 7.0516 REMARK 3 L33: 6.0217 L12: -1.5646 REMARK 3 L13: -1.6813 L23: 4.4347 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.3446 S13: -0.2618 REMARK 3 S21: -0.0538 S22: 0.1747 S23: 0.0003 REMARK 3 S31: 0.2077 S32: 0.0797 S33: -0.1638 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8953 13.9831 -3.0611 REMARK 3 T TENSOR REMARK 3 T11: 0.5062 T22: 0.8037 REMARK 3 T33: 0.3110 T12: 0.1369 REMARK 3 T13: 0.0362 T23: -0.1725 REMARK 3 L TENSOR REMARK 3 L11: 1.4833 L22: 5.6227 REMARK 3 L33: 9.4305 L12: -0.1726 REMARK 3 L13: -2.2494 L23: 4.0800 REMARK 3 S TENSOR REMARK 3 S11: 0.1151 S12: 0.7174 S13: -0.1191 REMARK 3 S21: -0.8883 S22: -0.0477 S23: -0.0441 REMARK 3 S31: -0.1021 S32: 0.0724 S33: -0.0674 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9631 18.6478 15.9373 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.1296 REMARK 3 T33: 0.1671 T12: -0.0116 REMARK 3 T13: -0.0548 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 1.3571 L22: 5.0508 REMARK 3 L33: 2.7252 L12: 0.1489 REMARK 3 L13: -0.1757 L23: 1.9425 REMARK 3 S TENSOR REMARK 3 S11: 0.1908 S12: 0.0945 S13: -0.0530 REMARK 3 S21: 0.1742 S22: -0.0391 S23: -0.0719 REMARK 3 S31: 0.1440 S32: -0.1481 S33: -0.1516 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6359 13.4879 8.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.1318 REMARK 3 T33: 0.2107 T12: 0.0771 REMARK 3 T13: -0.0606 T23: -0.1524 REMARK 3 L TENSOR REMARK 3 L11: 3.7236 L22: 7.9120 REMARK 3 L33: 4.3436 L12: -0.2989 REMARK 3 L13: 0.8907 L23: -0.1115 REMARK 3 S TENSOR REMARK 3 S11: 0.2014 S12: 0.3023 S13: -0.5600 REMARK 3 S21: -0.3359 S22: 0.0553 S23: 0.0550 REMARK 3 S31: 0.4495 S32: 0.3715 S33: -0.2567 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4350 26.7541 4.0054 REMARK 3 T TENSOR REMARK 3 T11: 0.1366 T22: 0.4669 REMARK 3 T33: 0.1792 T12: 0.0210 REMARK 3 T13: 0.0042 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 7.3454 L22: 4.5724 REMARK 3 L33: 9.4645 L12: -3.0246 REMARK 3 L13: -6.8880 L23: 1.2919 REMARK 3 S TENSOR REMARK 3 S11: 0.1747 S12: 0.8020 S13: 0.3012 REMARK 3 S21: -0.5204 S22: -0.0573 S23: -0.2368 REMARK 3 S31: 0.1577 S32: -0.0573 S33: -0.1174 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3979 29.0722 3.3609 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.2741 REMARK 3 T33: 0.1846 T12: -0.0246 REMARK 3 T13: 0.0938 T23: -0.0637 REMARK 3 L TENSOR REMARK 3 L11: 9.9506 L22: 8.7322 REMARK 3 L33: 7.6093 L12: -1.8807 REMARK 3 L13: 3.7641 L23: -4.2673 REMARK 3 S TENSOR REMARK 3 S11: 0.1604 S12: 0.9300 S13: 0.5859 REMARK 3 S21: -0.2795 S22: 0.0704 S23: -0.3266 REMARK 3 S31: -0.1812 S32: 0.2116 S33: -0.2308 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0959 11.3354 18.2919 REMARK 3 T TENSOR REMARK 3 T11: 0.2283 T22: 0.2302 REMARK 3 T33: 0.3880 T12: 0.1094 REMARK 3 T13: -0.1088 T23: -0.0581 REMARK 3 L TENSOR REMARK 3 L11: 3.4716 L22: 9.3254 REMARK 3 L33: 4.8702 L12: 3.2566 REMARK 3 L13: -1.6164 L23: -2.5391 REMARK 3 S TENSOR REMARK 3 S11: -0.1655 S12: -0.2881 S13: -0.6877 REMARK 3 S21: 0.0121 S22: 0.2690 S23: -0.3346 REMARK 3 S31: 0.8764 S32: 0.3866 S33: -0.1035 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2618 23.5019 20.9465 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.1777 REMARK 3 T33: 0.1726 T12: 0.0036 REMARK 3 T13: -0.0314 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 2.8396 L22: 5.8788 REMARK 3 L33: 2.7236 L12: 0.0497 REMARK 3 L13: 0.9283 L23: 0.8958 REMARK 3 S TENSOR REMARK 3 S11: 0.1967 S12: -0.0632 S13: -0.0731 REMARK 3 S21: 0.1914 S22: -0.0476 S23: -0.2384 REMARK 3 S31: 0.0378 S32: 0.2710 S33: -0.1491 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1328 19.5347 11.4618 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.2573 REMARK 3 T33: 0.2997 T12: 0.0481 REMARK 3 T13: 0.0446 T23: -0.1820 REMARK 3 L TENSOR REMARK 3 L11: 4.1511 L22: 0.0940 REMARK 3 L33: 3.3909 L12: 0.3454 REMARK 3 L13: 1.2562 L23: -0.3326 REMARK 3 S TENSOR REMARK 3 S11: 0.2469 S12: 0.3214 S13: -0.2599 REMARK 3 S21: 0.0029 S22: -0.0380 S23: -0.0233 REMARK 3 S31: 0.1304 S32: 0.6291 S33: -0.2089 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2245 29.2759 12.0646 REMARK 3 T TENSOR REMARK 3 T11: 0.0755 T22: 0.2969 REMARK 3 T33: 0.2331 T12: -0.0237 REMARK 3 T13: 0.0419 T23: -0.1177 REMARK 3 L TENSOR REMARK 3 L11: 4.9571 L22: 5.6772 REMARK 3 L33: 3.8077 L12: 2.5005 REMARK 3 L13: 0.8261 L23: -0.2834 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.5189 S13: 0.4593 REMARK 3 S21: -0.2720 S22: 0.1914 S23: -0.1913 REMARK 3 S31: -0.2730 S32: 0.7491 S33: -0.1751 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4469 25.5101 23.7943 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.2038 REMARK 3 T33: 0.1500 T12: 0.0134 REMARK 3 T13: -0.0600 T23: -0.1127 REMARK 3 L TENSOR REMARK 3 L11: 6.1306 L22: 8.5059 REMARK 3 L33: 4.9128 L12: 3.9274 REMARK 3 L13: -0.6978 L23: -2.7854 REMARK 3 S TENSOR REMARK 3 S11: 0.2446 S12: -0.4837 S13: -0.0782 REMARK 3 S21: 0.5476 S22: -0.0170 S23: -0.2004 REMARK 3 S31: -0.0282 S32: 0.0697 S33: -0.2276 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1174 20.2939 16.9283 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.2235 REMARK 3 T33: 0.2870 T12: 0.0289 REMARK 3 T13: -0.0179 T23: -0.1028 REMARK 3 L TENSOR REMARK 3 L11: 5.2389 L22: 4.5790 REMARK 3 L33: 9.6130 L12: -1.3188 REMARK 3 L13: 1.4209 L23: -3.6971 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: 0.0170 S13: -0.3307 REMARK 3 S21: -0.1720 S22: -0.0466 S23: -0.3860 REMARK 3 S31: 0.7574 S32: 0.4722 S33: -0.0433 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8339 23.5461 10.3970 REMARK 3 T TENSOR REMARK 3 T11: 0.2780 T22: 0.4316 REMARK 3 T33: 0.6217 T12: 0.1168 REMARK 3 T13: 0.1652 T23: 0.1155 REMARK 3 L TENSOR REMARK 3 L11: 7.5387 L22: 4.0900 REMARK 3 L33: 9.8317 L12: -3.9791 REMARK 3 L13: -7.1793 L23: 6.1460 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: -0.1251 S13: 0.4991 REMARK 3 S21: -0.3184 S22: 0.0422 S23: -0.2647 REMARK 3 S31: -0.2726 S32: 0.2830 S33: -0.1764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3M94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15993 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 2V8W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% MMG PEG 2000, 0.2 M (NH4)2SO4 AND REMARK 280 100 MM NA-CRITATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.48850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.48850 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.45300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.48850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.72650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.48850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.17950 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.48850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.48850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.45300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 52.48850 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 35.17950 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 52.48850 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 11.72650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 215 REMARK 465 SER A 216 REMARK 465 SER A 217 REMARK 465 VAL A 218 REMARK 465 ARG A 219 REMARK 465 LYS A 233 REMARK 465 ASP A 234 REMARK 465 ASN A 235 REMARK 465 ARG A 236 REMARK 465 ASN C 14 REMARK 465 SER C 15 REMARK 465 PRO C 16 REMARK 465 VAL C 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 ARG A 65 CD NE CZ NH1 NH2 REMARK 470 LYS A 67 CD CE NZ REMARK 470 LYS A 74 CE NZ REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 132 CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 GLN A 171 CG CD OE1 NE2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 VAL A 224 CG1 CG2 REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 SER A 232 OG REMARK 470 GLU C 11 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 80 20.56 -142.89 REMARK 500 GLU A 156 -128.29 61.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M7M A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE C 0 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M93 RELATED DB: PDB DBREF 3M94 A 49 236 UNP Q6PKX2 Q6PKX2_ASCSU 49 236 DBREF 3M94 C 1 17 UNP Q13541 4EBP1_HUMAN 51 67 SEQADV 3M94 MET A 48 UNP Q6PKX2 INITIATING METHIONINE SEQRES 1 A 189 MET ARG HIS PRO LEU GLN CYS HIS TRP ALA LEU TRP TYR SEQRES 2 A 189 LEU LYS ALA ASP ARG SER LYS ASP TRP GLU ASP CYS LEU SEQRES 3 A 189 LYS GLN VAL ALA VAL PHE ASP THR VAL GLU ASP PHE TRP SEQRES 4 A 189 SER LEU TYR ASN HIS ILE GLN ALA ALA SER GLY LEU THR SEQRES 5 A 189 TRP GLY SER ASP TYR TYR LEU PHE LYS GLU GLY ILE LYS SEQRES 6 A 189 PRO MET TRP GLU ASP GLU ASN ASN VAL LYS GLY GLY ARG SEQRES 7 A 189 TRP LEU VAL VAL VAL ASP LYS GLN LYS ARG ALA GLN LEU SEQRES 8 A 189 LEU ASP HIS TYR TRP LEU GLU LEU LEU MET ALA ILE ILE SEQRES 9 A 189 GLY GLU GLN PHE GLU ASP ASN GLY GLU TYR ILE CYS GLY SEQRES 10 A 189 ALA VAL VAL ASN VAL ARG GLN LYS GLY ASP LYS VAL SER SEQRES 11 A 189 LEU TRP THR ARG ASP SER LEU LYS ASP ASP VAL ASN LEU SEQRES 12 A 189 ARG ILE GLY GLN ILE LEU LYS ALA LYS LEU GLU ILE PRO SEQRES 13 A 189 ASP THR GLU PRO ILE ARG TYR GLU VAL HIS LYS ASP SER SEQRES 14 A 189 SER VAL ARG THR GLY SER MET VAL LYS PRO ARG ILE VAL SEQRES 15 A 189 ILE PRO SER LYS ASP ASN ARG SEQRES 1 C 17 ARG ILE ILE TYR ASP ARG LYS PHE LEU MET GLU CYS ARG SEQRES 2 C 17 ASN SER PRO VAL HET M7M A 1 31 HET ACE C 0 3 HETNAM M7M N,N,7-TRIMETHYLGUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE) HETNAM ACE ACETYL GROUP FORMUL 3 M7M C13 H23 N5 O11 P2 FORMUL 4 ACE C2 H4 O FORMUL 5 HOH *39(H2 O) HELIX 1 1 ASP A 68 ASP A 71 5 4 HELIX 2 2 VAL A 82 ASN A 90 1 9 HELIX 3 3 ALA A 94 LEU A 98 5 5 HELIX 4 4 LYS A 134 GLY A 152 1 19 HELIX 5 5 PHE A 155 GLU A 160 5 6 HELIX 6 6 LYS A 185 GLU A 201 1 17 HELIX 7 7 ASP C 5 ARG C 13 1 9 SHEET 1 A 8 LEU A 73 THR A 81 0 SHEET 2 A 8 PRO A 51 LEU A 61 -1 N LEU A 58 O VAL A 76 SHEET 3 A 8 ASP A 103 LYS A 108 -1 O PHE A 107 N ALA A 57 SHEET 4 A 8 ILE A 162 ASN A 168 -1 O ALA A 165 N LEU A 106 SHEET 5 A 8 ASP A 174 THR A 180 -1 O TRP A 179 N CYS A 163 SHEET 6 A 8 GLY A 124 VAL A 130 -1 N VAL A 130 O ASP A 174 SHEET 7 A 8 ILE A 208 VAL A 212 -1 O ARG A 209 N LEU A 127 SHEET 8 A 8 ILE A 228 ILE A 230 -1 O ILE A 228 N TYR A 210 CISPEP 1 ILE A 230 PRO A 231 0 0.54 SITE 1 AC1 7 TRP A 69 MET A 114 TRP A 115 GLU A 116 SITE 2 AC1 7 ASN A 168 ARG A 170 LYS A 175 SITE 1 AC2 5 TYR A 60 LEU A 98 TYR A 104 ARG C 1 SITE 2 AC2 5 ILE C 2 CRYST1 104.977 104.977 46.906 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021319 0.00000