HEADER TRANSPORT PROTEIN 20-MAR-10 3M95 TITLE CRYSTAL STRUCTURE OF AUTOPHAGY-RELATED PROTEIN ATG8 FROM THE SILKWORM TITLE 2 BOMBYX MORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY RELATED PROTEIN ATG8; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATG8, GAMMA-AMINOBUTYRIC ACID TYPE A RECEPTOR-ASSOCIATED COMPND 5 PROTEIN, GABA RECEPTOR PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-DERIVED VECTOR KEYWDS ALPHA SLASH BETA, RECEPTOR, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.-B.TENG,C.HU,X.ZHANG,Y.L.JIANG,H.-X.HU,C.Z.ZHOU REVDAT 2 01-NOV-23 3M95 1 SEQADV REVDAT 1 21-JUL-10 3M95 0 JRNL AUTH C.HU,X.ZHANG,Y.-B.TENG,H.-X.HU,W.-F.LI JRNL TITL STRUCTURE OF AUTOPHAGY-RELATED PROTEIN ATG8 FROM THE JRNL TITL 2 SILKWORM BOMBYX MORI JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 787 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20606273 JRNL DOI 10.1107/S1744309110018464 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 14385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 765 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1029 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1950 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1996 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2684 ; 1.941 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 229 ; 7.638 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;31.567 ;23.048 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 363 ;21.687 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.318 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1536 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1158 ; 2.028 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1878 ; 3.303 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 838 ; 2.821 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 806 ; 4.419 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 85 REMARK 3 RESIDUE RANGE : A 89 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): -37.7160 16.6490 -0.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.1996 T22: 0.1830 REMARK 3 T33: 0.0922 T12: -0.0842 REMARK 3 T13: 0.0273 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.0659 L22: 2.7403 REMARK 3 L33: 1.0896 L12: 1.1620 REMARK 3 L13: -0.2909 L23: 0.0712 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: 0.1502 S13: 0.2631 REMARK 3 S21: -0.0882 S22: 0.1312 S23: 0.0425 REMARK 3 S31: -0.0349 S32: 0.2796 S33: -0.1993 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 85 REMARK 3 RESIDUE RANGE : B 89 B 110 REMARK 3 ORIGIN FOR THE GROUP (A): -56.3350 16.3010 16.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.2535 T22: 0.1813 REMARK 3 T33: 0.0585 T12: 0.1009 REMARK 3 T13: 0.0650 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 5.2018 L22: 3.9422 REMARK 3 L33: 1.4713 L12: -2.7539 REMARK 3 L13: -0.9256 L23: 0.6646 REMARK 3 S TENSOR REMARK 3 S11: 0.5268 S12: 0.5078 S13: 0.4893 REMARK 3 S21: -0.2507 S22: -0.3175 S23: -0.2676 REMARK 3 S31: -0.1773 S32: -0.3335 S33: -0.2093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14385 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 96.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KJT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 CITRATE, 0.2M SODIUM/POTASSIUM TARTRATE, PH 5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.15450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.07725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.23175 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 GLY A 116 REMARK 465 ASN A 117 REMARK 465 MET B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 116 REMARK 465 ASN B 117 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 54 O HOH A 121 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 65 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ILE B 68 CG1 - CB - CG2 ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 40 57.97 -103.88 REMARK 500 HIS A 69 38.41 70.16 REMARK 500 VAL A 114 -40.54 -133.57 REMARK 500 TYR B 25 66.14 -154.65 REMARK 500 LYS B 38 49.28 37.29 REMARK 500 ARG B 40 69.24 -101.95 REMARK 500 HIS B 69 43.17 70.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 38 ALA B 39 145.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 3M95 A 1 117 UNP Q2F5R5 Q2F5R5_BOMMO 1 117 DBREF 3M95 B 1 117 UNP Q2F5R5 Q2F5R5_BOMMO 1 117 SEQADV 3M95 MET A -7 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS A -6 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS A -5 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS A -4 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS A -3 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS A -2 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS A -1 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 GLY A 0 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 MET B -7 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS B -6 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS B -5 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS B -4 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS B -3 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS B -2 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 HIS B -1 UNP Q2F5R5 EXPRESSION TAG SEQADV 3M95 GLY B 0 UNP Q2F5R5 EXPRESSION TAG SEQRES 1 A 125 MET HIS HIS HIS HIS HIS HIS GLY MET LYS PHE GLN TYR SEQRES 2 A 125 LYS GLU GLU HIS SER PHE GLU LYS ARG LYS ALA GLU GLY SEQRES 3 A 125 GLU LYS ILE ARG ARG LYS TYR PRO ASP ARG VAL PRO VAL SEQRES 4 A 125 ILE VAL GLU LYS ALA PRO LYS ALA ARG LEU GLY ASP LEU SEQRES 5 A 125 ASP LYS LYS LYS TYR LEU VAL PRO SER ASP LEU THR VAL SEQRES 6 A 125 GLY GLN PHE TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU SEQRES 7 A 125 ARG PRO GLU ASP ALA LEU PHE PHE PHE VAL ASN ASN VAL SEQRES 8 A 125 ILE PRO PRO THR SER ALA THR MET GLY SER LEU TYR GLN SEQRES 9 A 125 GLU HIS HIS ASP GLU ASP PHE PHE LEU TYR ILE ALA PHE SEQRES 10 A 125 SER ASP GLU ASN VAL TYR GLY ASN SEQRES 1 B 125 MET HIS HIS HIS HIS HIS HIS GLY MET LYS PHE GLN TYR SEQRES 2 B 125 LYS GLU GLU HIS SER PHE GLU LYS ARG LYS ALA GLU GLY SEQRES 3 B 125 GLU LYS ILE ARG ARG LYS TYR PRO ASP ARG VAL PRO VAL SEQRES 4 B 125 ILE VAL GLU LYS ALA PRO LYS ALA ARG LEU GLY ASP LEU SEQRES 5 B 125 ASP LYS LYS LYS TYR LEU VAL PRO SER ASP LEU THR VAL SEQRES 6 B 125 GLY GLN PHE TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU SEQRES 7 B 125 ARG PRO GLU ASP ALA LEU PHE PHE PHE VAL ASN ASN VAL SEQRES 8 B 125 ILE PRO PRO THR SER ALA THR MET GLY SER LEU TYR GLN SEQRES 9 B 125 GLU HIS HIS ASP GLU ASP PHE PHE LEU TYR ILE ALA PHE SEQRES 10 B 125 SER ASP GLU ASN VAL TYR GLY ASN FORMUL 3 HOH *59(H2 O) HELIX 1 1 PHE A 3 HIS A 9 1 7 HELIX 2 2 SER A 10 TYR A 25 1 16 HELIX 3 3 THR A 56 ILE A 68 1 13 HELIX 4 4 THR A 90 HIS A 99 1 10 HELIX 5 5 PHE B 3 GLU B 8 1 6 HELIX 6 6 SER B 10 TYR B 25 1 16 HELIX 7 7 THR B 56 ILE B 68 1 13 HELIX 8 8 THR B 90 HIS B 99 1 10 SHEET 1 A 4 LYS A 48 PRO A 52 0 SHEET 2 A 4 ARG A 28 LYS A 35 -1 N VAL A 29 O VAL A 51 SHEET 3 A 4 LEU A 105 SER A 110 1 O ILE A 107 N ILE A 32 SHEET 4 A 4 PHE A 77 PHE A 79 -1 N PHE A 77 O SER A 110 SHEET 1 B 4 LYS B 48 PRO B 52 0 SHEET 2 B 4 ARG B 28 LYS B 35 -1 N VAL B 29 O VAL B 51 SHEET 3 B 4 LEU B 105 SER B 110 1 O ILE B 107 N ILE B 32 SHEET 4 B 4 PHE B 77 PHE B 79 -1 N PHE B 79 O ALA B 108 CRYST1 96.768 96.768 44.309 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022569 0.00000