HEADER TRANSCRIPTION 21-MAR-10 3M99 TITLE STRUCTURE OF THE UBP8-SGF11-SGF73-SUS1 SAGA DUB MODULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN THIOESTERASE 8, UBIQUITIN-SPECIFIC-PROCESSING COMPND 5 PROTEASE 8, DEUBIQUITINATING ENZYME 8; COMPND 6 EC: 3.1.2.15; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SAGA-ASSOCIATED FACTOR 11; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: 11 KDA SAGA-ASSOCIATED FACTOR; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROTEIN SUS1; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: SAGA-ASSOCIATED FACTOR 73; COMPND 19 CHAIN: D; COMPND 20 FRAGMENT: UNP RESIDUES: 1-104; COMPND 21 SYNONYM: 73 KDA SAGA-ASSOCIATED FACTOR, SAGA HISTONE COMPND 22 ACETYLTRANSFERASE COMPLEX 73 KDA SUBUNIT; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: UBP8, YM9959.05, YMR223W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 GENE: SGF11, YPL047W; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 17 ORGANISM_COMMON: YEAST; SOURCE 18 ORGANISM_TAXID: 4932; SOURCE 19 GENE: SUS1, YBR111W-A; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 24 ORGANISM_COMMON: YEAST; SOURCE 25 ORGANISM_TAXID: 4932; SOURCE 26 GENE: SGF73, SGF73 (AA 1-104), YGL066W; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC FINGER, ACTIVATOR, CHROMATIN REGULATOR, METAL-BINDING, NUCLEUS, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC-FINGER, MRNA KEYWDS 3 TRANSPORT, UBIQUITINATION, DEUBIQUITINATION, NUCLEAR PORE COMPLEX, KEYWDS 4 PROTEIN MODIFICATION EXPDTA X-RAY DIFFRACTION AUTHOR A.KOHLER,E.ZIMMERMAN,M.SCHNEIDER,E.HURT,N.ZHENG REVDAT 4 06-SEP-23 3M99 1 REMARK SSBOND LINK REVDAT 3 08-NOV-17 3M99 1 REMARK REVDAT 2 07-JUL-10 3M99 1 JRNL REVDAT 1 05-MAY-10 3M99 0 JRNL AUTH A.KOHLER,E.ZIMMERMAN,M.SCHNEIDER,E.HURT,N.ZHENG JRNL TITL STRUCTURAL BASIS FOR ASSEMBLY AND ACTIVATION OF THE JRNL TITL 2 HETEROTETRAMERIC SAGA HISTONE H2B DEUBIQUITINASE MODULE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 141 606 2010 JRNL REFN ISSN 0092-8674 JRNL PMID 20434206 JRNL DOI 10.1016/J.CELL.2010.04.026 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 22908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1240 - 6.6530 0.99 2989 154 0.1850 0.2190 REMARK 3 2 6.6530 - 5.2830 1.00 3018 127 0.2130 0.2990 REMARK 3 3 5.2830 - 4.6160 0.99 2982 168 0.1820 0.2760 REMARK 3 4 4.6160 - 4.1940 0.99 2968 171 0.1810 0.2610 REMARK 3 5 4.1940 - 3.8940 0.99 2957 180 0.2150 0.2660 REMARK 3 6 3.8940 - 3.6640 0.99 3011 143 0.2330 0.3510 REMARK 3 7 3.6640 - 3.4810 0.98 2943 130 0.2450 0.3060 REMARK 3 8 3.4810 - 3.3290 0.97 2902 169 0.2780 0.3470 REMARK 3 9 3.3290 - 3.2010 0.96 2876 139 0.2760 0.3570 REMARK 3 10 3.2010 - 3.0910 0.93 2822 145 0.2760 0.3350 REMARK 3 11 3.0910 - 2.9940 0.88 2641 154 0.3010 0.3700 REMARK 3 12 2.9940 - 2.9080 0.81 2416 124 0.3160 0.4010 REMARK 3 13 2.9080 - 2.8320 0.72 2146 116 0.3230 0.3620 REMARK 3 14 2.8320 - 2.7630 0.62 1913 92 0.3060 0.4280 REMARK 3 15 2.7630 - 2.7000 0.49 1476 61 0.3330 0.3580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 30.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 27.63500 REMARK 3 B22 (A**2) : -6.48900 REMARK 3 B33 (A**2) : -21.14600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -13.82900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5615 REMARK 3 ANGLE : 1.064 7561 REMARK 3 CHIRALITY : 0.074 845 REMARK 3 PLANARITY : 0.003 969 REMARK 3 DIHEDRAL : 19.279 2072 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:225) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9648 -17.3730 51.6486 REMARK 3 T TENSOR REMARK 3 T11: 0.3909 T22: 0.4346 REMARK 3 T33: 0.5115 T12: 0.0410 REMARK 3 T13: -0.0150 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.6556 L22: 1.4371 REMARK 3 L33: 2.4292 L12: 0.1427 REMARK 3 L13: -0.2079 L23: -0.8194 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.1379 S13: 0.0793 REMARK 3 S21: 0.2441 S22: -0.1087 S23: -0.1729 REMARK 3 S31: -0.2186 S32: 0.1598 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 226:272) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5987 -21.3844 22.4964 REMARK 3 T TENSOR REMARK 3 T11: 0.9290 T22: 0.5785 REMARK 3 T33: 0.6696 T12: 0.0575 REMARK 3 T13: 0.0513 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.3444 L22: 0.2673 REMARK 3 L33: 0.4196 L12: 0.7291 REMARK 3 L13: 0.4302 L23: 0.4289 REMARK 3 S TENSOR REMARK 3 S11: -0.2204 S12: 0.5394 S13: -0.6063 REMARK 3 S21: -0.6862 S22: 0.3141 S23: 0.4707 REMARK 3 S31: 0.1748 S32: -0.0556 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 273:322) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7435 -25.3145 24.6900 REMARK 3 T TENSOR REMARK 3 T11: 0.6681 T22: 0.7300 REMARK 3 T33: 0.6546 T12: -0.0215 REMARK 3 T13: -0.1050 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.4791 L22: 0.5066 REMARK 3 L33: 0.4351 L12: 0.0275 REMARK 3 L13: -0.1848 L23: -0.1432 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.4486 S13: -0.0981 REMARK 3 S21: -0.4618 S22: -0.0044 S23: 0.3215 REMARK 3 S31: 0.1538 S32: -0.3206 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 323:372) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2655 -20.7577 20.1249 REMARK 3 T TENSOR REMARK 3 T11: 0.6353 T22: 0.7237 REMARK 3 T33: 0.6707 T12: -0.0301 REMARK 3 T13: -0.1624 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: -0.7894 L22: -0.5241 REMARK 3 L33: -0.0452 L12: -0.0959 REMARK 3 L13: 0.9642 L23: 0.2565 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.1803 S13: 0.0169 REMARK 3 S21: -0.6091 S22: 0.1126 S23: 0.4660 REMARK 3 S31: 0.1522 S32: -0.4719 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 373:471) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3606 -8.5607 34.2219 REMARK 3 T TENSOR REMARK 3 T11: 0.5247 T22: 0.5222 REMARK 3 T33: 0.4973 T12: 0.1031 REMARK 3 T13: -0.0379 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.4092 L22: 1.1860 REMARK 3 L33: 0.7922 L12: 0.9507 REMARK 3 L13: 0.5522 L23: 0.4816 REMARK 3 S TENSOR REMARK 3 S11: -0.0491 S12: 0.0428 S13: 0.2392 REMARK 3 S21: -0.1860 S22: -0.0632 S23: 0.2757 REMARK 3 S31: -0.3583 S32: -0.3490 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 7:19) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3328 -26.7559 66.6069 REMARK 3 T TENSOR REMARK 3 T11: 0.3167 T22: 0.8284 REMARK 3 T33: 0.6832 T12: 0.1640 REMARK 3 T13: 0.1285 T23: 0.0830 REMARK 3 L TENSOR REMARK 3 L11: -0.0502 L22: -0.0221 REMARK 3 L33: 0.0168 L12: 0.0339 REMARK 3 L13: -0.0962 L23: -0.0151 REMARK 3 S TENSOR REMARK 3 S11: -0.1089 S12: -0.5435 S13: -0.0455 REMARK 3 S21: -0.4412 S22: 0.3842 S23: 0.7690 REMARK 3 S31: -0.4112 S32: -0.1963 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 20:46) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7920 -9.5143 58.3635 REMARK 3 T TENSOR REMARK 3 T11: 0.7215 T22: 0.4883 REMARK 3 T33: 0.5807 T12: 0.1271 REMARK 3 T13: -0.0293 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 0.5038 L22: -0.0617 REMARK 3 L33: 0.9033 L12: -0.2398 REMARK 3 L13: 0.5597 L23: -0.2593 REMARK 3 S TENSOR REMARK 3 S11: -0.3255 S12: 0.8769 S13: 0.4696 REMARK 3 S21: 0.1082 S22: 0.4107 S23: 0.0695 REMARK 3 S31: -0.2342 S32: -0.0066 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 47:65) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9926 9.5423 40.6752 REMARK 3 T TENSOR REMARK 3 T11: 1.0687 T22: 0.6057 REMARK 3 T33: 0.7930 T12: -0.0310 REMARK 3 T13: -0.1326 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 0.2489 L22: 0.0807 REMARK 3 L33: 0.0114 L12: -0.0371 REMARK 3 L13: 0.0526 L23: -0.0564 REMARK 3 S TENSOR REMARK 3 S11: 0.3434 S12: -0.0880 S13: 0.1984 REMARK 3 S21: -0.8969 S22: -0.1566 S23: 0.6693 REMARK 3 S31: -0.5480 S32: -0.1407 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 66:76) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7030 6.8688 22.5060 REMARK 3 T TENSOR REMARK 3 T11: 1.2070 T22: 0.7052 REMARK 3 T33: 0.9485 T12: -0.1813 REMARK 3 T13: -0.1554 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 0.1207 L22: 0.0813 REMARK 3 L33: 0.1467 L12: 0.0745 REMARK 3 L13: -0.0700 L23: -0.1287 REMARK 3 S TENSOR REMARK 3 S11: -0.2955 S12: 1.1449 S13: 0.3524 REMARK 3 S21: 0.4249 S22: 0.0710 S23: 0.4907 REMARK 3 S31: -0.4600 S32: 0.6673 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 77:90) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6441 5.5058 17.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.8218 T22: 0.5798 REMARK 3 T33: 0.6335 T12: 0.0743 REMARK 3 T13: 0.1335 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.0708 L22: 0.1753 REMARK 3 L33: 0.3410 L12: 0.1007 REMARK 3 L13: -0.0781 L23: -0.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.5020 S12: 0.5379 S13: 0.0527 REMARK 3 S21: 0.0228 S22: 0.6939 S23: -0.0390 REMARK 3 S31: 0.4610 S32: 0.3534 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 91:95) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8818 0.0054 9.7360 REMARK 3 T TENSOR REMARK 3 T11: 1.0875 T22: 1.0617 REMARK 3 T33: 0.6375 T12: -0.1225 REMARK 3 T13: -0.0350 T23: -0.1894 REMARK 3 L TENSOR REMARK 3 L11: -0.0252 L22: 0.0098 REMARK 3 L33: -0.0121 L12: -0.0664 REMARK 3 L13: -0.0157 L23: 0.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: 0.3318 S13: 0.3360 REMARK 3 S21: -0.2932 S22: 0.2226 S23: -0.7455 REMARK 3 S31: -0.1236 S32: 0.1848 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN C AND RESID 6:14) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9355 -36.6937 70.3356 REMARK 3 T TENSOR REMARK 3 T11: 0.5855 T22: 1.2601 REMARK 3 T33: 0.9208 T12: -0.0674 REMARK 3 T13: 0.1161 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: -0.0119 L22: 0.0071 REMARK 3 L33: 0.0017 L12: -0.0157 REMARK 3 L13: -0.0287 L23: 0.0131 REMARK 3 S TENSOR REMARK 3 S11: 0.4757 S12: -0.6064 S13: 0.4276 REMARK 3 S21: -0.3950 S22: 0.1628 S23: 0.1134 REMARK 3 S31: 0.6093 S32: -0.5256 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN C AND RESID 15:27) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9844 -34.7681 57.0238 REMARK 3 T TENSOR REMARK 3 T11: 0.5725 T22: 0.7889 REMARK 3 T33: 0.5995 T12: -0.0245 REMARK 3 T13: 0.1050 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.0723 L22: 0.0661 REMARK 3 L33: 0.0052 L12: -0.0548 REMARK 3 L13: 0.0234 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: 0.2586 S12: 0.1242 S13: -0.4887 REMARK 3 S21: -0.0380 S22: 0.0136 S23: -0.4683 REMARK 3 S31: -0.0780 S32: -0.7056 S33: -0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN C AND RESID 28:41) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6621 -17.2046 51.5682 REMARK 3 T TENSOR REMARK 3 T11: 0.3454 T22: 0.7052 REMARK 3 T33: 0.6507 T12: 0.1276 REMARK 3 T13: -0.0818 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.1689 L22: 0.1170 REMARK 3 L33: 0.1070 L12: -0.0748 REMARK 3 L13: -0.1028 L23: -0.0203 REMARK 3 S TENSOR REMARK 3 S11: -0.2965 S12: 0.5708 S13: 0.3005 REMARK 3 S21: -0.5540 S22: -0.1211 S23: 0.7726 REMARK 3 S31: -0.1164 S32: -1.0956 S33: -0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN C AND RESID 42:64) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1600 -5.8657 63.4812 REMARK 3 T TENSOR REMARK 3 T11: 0.9179 T22: 0.6377 REMARK 3 T33: 0.6710 T12: 0.1087 REMARK 3 T13: 0.0369 T23: -0.1272 REMARK 3 L TENSOR REMARK 3 L11: 0.1361 L22: 0.1322 REMARK 3 L33: -0.0017 L12: 0.0083 REMARK 3 L13: 0.0369 L23: 0.0089 REMARK 3 S TENSOR REMARK 3 S11: 0.3110 S12: 0.1876 S13: 0.6623 REMARK 3 S21: 0.1088 S22: 0.2353 S23: 0.2034 REMARK 3 S31: -0.4727 S32: 0.9448 S33: -0.0000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN C AND RESID 65:86) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8103 -18.6267 59.8406 REMARK 3 T TENSOR REMARK 3 T11: 0.4071 T22: 0.9876 REMARK 3 T33: 0.7999 T12: 0.1494 REMARK 3 T13: 0.1735 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: -0.0831 L22: 0.0750 REMARK 3 L33: 0.0157 L12: -0.0182 REMARK 3 L13: 0.2990 L23: -0.0281 REMARK 3 S TENSOR REMARK 3 S11: 0.1220 S12: -0.9114 S13: 0.6195 REMARK 3 S21: 0.6946 S22: -0.3223 S23: 1.5436 REMARK 3 S31: -0.5710 S32: -0.8300 S33: 0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN C AND RESID 87:96) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4049 -38.2362 63.9515 REMARK 3 T TENSOR REMARK 3 T11: 1.5410 T22: 1.1532 REMARK 3 T33: 1.0723 T12: -0.1878 REMARK 3 T13: -0.0710 T23: 0.0641 REMARK 3 L TENSOR REMARK 3 L11: 0.0131 L22: 0.0394 REMARK 3 L33: -0.0073 L12: -0.0064 REMARK 3 L13: 0.0158 L23: -0.0301 REMARK 3 S TENSOR REMARK 3 S11: -0.4575 S12: 0.2680 S13: -0.3805 REMARK 3 S21: 0.1124 S22: 0.0064 S23: 0.2508 REMARK 3 S31: -0.0926 S32: -0.0701 S33: -0.0000 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN D AND RESID 7:30) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9574 -44.1149 67.6492 REMARK 3 T TENSOR REMARK 3 T11: 1.1797 T22: 1.3093 REMARK 3 T33: 1.2586 T12: -0.1519 REMARK 3 T13: 0.1727 T23: 0.1488 REMARK 3 L TENSOR REMARK 3 L11: 0.0520 L22: -0.0155 REMARK 3 L33: 0.1442 L12: 0.0971 REMARK 3 L13: 0.1556 L23: -0.0868 REMARK 3 S TENSOR REMARK 3 S11: 0.2799 S12: -0.0758 S13: -0.4451 REMARK 3 S21: -0.5011 S22: 0.2473 S23: 0.6066 REMARK 3 S31: 0.4511 S32: 0.0091 S33: -0.0000 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN D AND RESID 31:98) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5294 -25.0927 46.3008 REMARK 3 T TENSOR REMARK 3 T11: 0.5602 T22: 0.4520 REMARK 3 T33: 0.5307 T12: 0.0375 REMARK 3 T13: 0.0039 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: -0.0387 L22: 0.5426 REMARK 3 L33: 1.0121 L12: -0.2494 REMARK 3 L13: 0.2279 L23: -0.2275 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: 0.0276 S13: -0.0461 REMARK 3 S21: -0.0374 S22: 0.0299 S23: -0.1593 REMARK 3 S31: -0.0815 S32: 0.0429 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3M99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22908 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 35.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 64.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30400 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD+MR REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2HD5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE, 18% PEG 3,350, REMARK 280 PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.75950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 177 REMARK 465 SER A 178 REMARK 465 PRO A 179 REMARK 465 ASN A 199 REMARK 465 THR A 200 REMARK 465 LYS A 201 REMARK 465 GLN A 202 REMARK 465 ALA A 203 REMARK 465 SER A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 SER A 207 REMARK 465 THR A 208 REMARK 465 GLN A 228 REMARK 465 ASN A 229 REMARK 465 LEU A 230 REMARK 465 ALA A 231 REMARK 465 GLY A 232 REMARK 465 TYR A 233 REMARK 465 SER A 234 REMARK 465 GLU A 262 REMARK 465 VAL A 263 REMARK 465 SER A 264 REMARK 465 ARG A 265 REMARK 465 ALA A 266 REMARK 465 TYR A 334 REMARK 465 HIS A 335 REMARK 465 CYS A 336 REMARK 465 GLY A 337 REMARK 465 GLU A 338 REMARK 465 CYS A 339 REMARK 465 ASN A 340 REMARK 465 SER A 341 REMARK 465 THR A 342 REMARK 465 GLN A 343 REMARK 465 ASP A 344 REMARK 465 THR A 394 REMARK 465 LYS A 395 REMARK 465 GLU A 396 REMARK 465 LYS A 397 REMARK 465 ASP A 398 REMARK 465 LYS A 399 REMARK 465 HIS A 400 REMARK 465 SER A 401 REMARK 465 GLU A 402 REMARK 465 ASN A 403 REMARK 465 GLY A 404 REMARK 465 LYS A 405 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 THR B 5 REMARK 465 ILE B 6 REMARK 465 GLY B 96 REMARK 465 ALA B 97 REMARK 465 ARG B 98 REMARK 465 ARG B 99 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 MET C 3 REMARK 465 ASP C 4 REMARK 465 THR C 5 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 SER D 3 REMARK 465 GLY D 4 REMARK 465 ASP D 5 REMARK 465 ALA D 6 REMARK 465 SER D 22 REMARK 465 GLN D 23 REMARK 465 GLY D 24 REMARK 465 SER D 25 REMARK 465 GLY D 26 REMARK 465 PRO D 27 REMARK 465 SER D 28 REMARK 465 ASN D 29 REMARK 465 ALA D 99 REMARK 465 GLY D 100 REMARK 465 ALA D 101 REMARK 465 SER D 102 REMARK 465 GLY D 103 REMARK 465 LYS D 104 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 76 ZN ZN B 100 1.64 REMARK 500 CG1 VAL A 406 CD PRO A 407 1.68 REMARK 500 O LEU C 70 O HOH C 98 1.99 REMARK 500 CA SER D 37 O HOH D 110 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 66 CB - CA - C ANGL. DEV. = -30.8 DEGREES REMARK 500 SER B 67 N - CA - CB ANGL. DEV. = -11.0 DEGREES REMARK 500 SER B 67 N - CA - C ANGL. DEV. = -19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 3 -71.92 -131.27 REMARK 500 CYS A 4 78.18 46.97 REMARK 500 ASP A 18 5.35 -69.33 REMARK 500 THR A 48 -74.00 -90.46 REMARK 500 HIS A 50 -1.30 73.47 REMARK 500 SER A 54 -87.64 -50.03 REMARK 500 CYS A 63 -140.03 -97.57 REMARK 500 CYS A 68 -160.27 -67.41 REMARK 500 TRP A 69 -40.19 -137.24 REMARK 500 SER A 72 49.87 37.81 REMARK 500 ILE A 81 -15.94 -151.08 REMARK 500 ASN A 91 -6.03 -149.92 REMARK 500 GLU A 100 33.51 74.96 REMARK 500 ASN A 105 -32.70 -7.63 REMARK 500 ASP A 111 35.97 -95.04 REMARK 500 TYR A 117 -17.71 -151.49 REMARK 500 ASP A 119 -75.37 -57.58 REMARK 500 THR A 125 -175.43 179.11 REMARK 500 MET A 126 128.69 -170.07 REMARK 500 MET A 130 -63.83 14.13 REMARK 500 GLN A 168 19.74 54.61 REMARK 500 ASN A 173 63.44 -158.38 REMARK 500 LYS A 175 -35.27 -34.55 REMARK 500 GLU A 193 38.15 -89.45 REMARK 500 LEU A 194 -29.64 -144.77 REMARK 500 THR A 210 103.27 -40.17 REMARK 500 ASN A 211 -119.23 -106.72 REMARK 500 ARG A 212 79.16 -55.86 REMARK 500 ILE A 226 -60.77 -109.01 REMARK 500 ASN A 268 -69.05 -149.32 REMARK 500 LYS A 269 56.02 -142.55 REMARK 500 GLN A 293 55.35 -99.35 REMARK 500 SER A 296 78.08 -68.20 REMARK 500 ASP A 305 148.31 177.10 REMARK 500 LYS A 311 -155.39 -81.78 REMARK 500 ASP A 312 44.20 -69.70 REMARK 500 LYS A 313 61.63 -102.19 REMARK 500 LYS A 314 -41.82 -29.79 REMARK 500 PHE A 323 -19.92 -47.79 REMARK 500 LEU A 369 -84.14 -106.92 REMARK 500 ASN A 370 -84.52 -86.93 REMARK 500 ASN A 443 -91.28 -57.92 REMARK 500 ASP A 444 -84.50 -122.20 REMARK 500 LYS A 457 50.32 -114.94 REMARK 500 GLN A 459 93.38 -65.80 REMARK 500 ARG A 468 -46.83 -134.10 REMARK 500 ASP B 44 36.36 -81.98 REMARK 500 ASP B 57 176.87 -51.90 REMARK 500 GLN B 65 65.99 62.09 REMARK 500 SER B 67 -46.64 -131.12 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 472 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 HIS A 6 ND1 78.2 REMARK 620 3 CYS A 99 SG 49.7 86.2 REMARK 620 4 CYS A 99 N 124.8 123.2 79.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 473 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 CYS A 49 SG 106.1 REMARK 620 3 CYS A 68 SG 96.9 125.9 REMARK 620 4 HIS A 73 ND1 104.1 134.7 82.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 474 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 60 SG REMARK 620 2 CYS A 63 SG 65.2 REMARK 620 3 HIS A 77 NE2 97.9 112.3 REMARK 620 4 HIS A 83 ND1 81.7 126.1 113.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 475 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 CYS A 182 SG 116.7 REMARK 620 3 CYS A 185 SG 96.2 90.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 476 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 250 ND1 REMARK 620 2 CYS A 271 SG 102.1 REMARK 620 3 CYS A 273 SG 104.5 153.4 REMARK 620 4 HIS A 276 ND1 84.0 90.8 91.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 100 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 73 SG REMARK 620 2 HIS B 88 NE2 110.9 REMARK 620 3 CYS B 92 SG 109.9 86.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 78 SG REMARK 620 2 CYS D 81 SG 98.7 REMARK 620 3 HIS D 93 NE2 122.0 95.7 REMARK 620 4 CYS D 98 SG 105.5 118.5 115.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 472 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 473 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 474 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 105 DBREF 3M99 A 1 471 UNP P50102 UBP8_YEAST 1 471 DBREF 3M99 B 1 99 UNP Q03067 SGF11_YEAST 1 99 DBREF 3M99 C 1 96 UNP Q6WNK7 SUS1_YEAST 1 96 DBREF 3M99 D 1 104 UNP P53165 SGF73_YEAST 1 104 SEQRES 1 A 471 MET SER ILE CYS PRO HIS ILE GLN GLN VAL PHE GLN ASN SEQRES 2 A 471 GLU LYS SER LYS ASP GLY VAL LEU LYS THR CYS ASN ALA SEQRES 3 A 471 ALA ARG TYR ILE LEU ASN HIS SER VAL PRO LYS GLU LYS SEQRES 4 A 471 PHE LEU ASN THR MET LYS CYS GLY THR CYS HIS GLU ILE SEQRES 5 A 471 ASN SER GLY ALA THR PHE MET CYS LEU GLN CYS GLY PHE SEQRES 6 A 471 CYS GLY CYS TRP ASN HIS SER HIS PHE LEU SER HIS SER SEQRES 7 A 471 LYS GLN ILE GLY HIS ILE PHE GLY ILE ASN SER ASN ASN SEQRES 8 A 471 GLY LEU LEU PHE CYS PHE LYS CYS GLU ASP TYR ILE GLY SEQRES 9 A 471 ASN ILE ASP LEU ILE ASN ASP ALA ILE LEU ALA LYS TYR SEQRES 10 A 471 TRP ASP ASP VAL CYS THR LYS THR MET VAL PRO SER MET SEQRES 11 A 471 GLU ARG ARG ASP GLY LEU SER GLY LEU ILE ASN MET GLY SEQRES 12 A 471 SER THR CYS PHE MET SER SER ILE LEU GLN CYS LEU ILE SEQRES 13 A 471 HIS ASN PRO TYR PHE ILE ARG HIS SER MET SER GLN ILE SEQRES 14 A 471 HIS SER ASN ASN CYS LYS VAL ARG SER PRO ASP LYS CYS SEQRES 15 A 471 PHE SER CYS ALA LEU ASP LYS ILE VAL HIS GLU LEU TYR SEQRES 16 A 471 GLY ALA LEU ASN THR LYS GLN ALA SER SER SER SER THR SEQRES 17 A 471 SER THR ASN ARG GLN THR GLY PHE ILE TYR LEU LEU THR SEQRES 18 A 471 CYS ALA TRP LYS ILE ASN GLN ASN LEU ALA GLY TYR SER SEQRES 19 A 471 GLN GLN ASP ALA HIS GLU PHE TRP GLN PHE ILE ILE ASN SEQRES 20 A 471 GLN ILE HIS GLN SER TYR VAL LEU ASP LEU PRO ASN ALA SEQRES 21 A 471 LYS GLU VAL SER ARG ALA ASN ASN LYS GLN CYS GLU CYS SEQRES 22 A 471 ILE VAL HIS THR VAL PHE GLU GLY SER LEU GLU SER SER SEQRES 23 A 471 ILE VAL CYS PRO GLY CYS GLN ASN ASN SER LYS THR THR SEQRES 24 A 471 ILE ASP PRO PHE LEU ASP LEU SER LEU ASP ILE LYS ASP SEQRES 25 A 471 LYS LYS LYS LEU TYR GLU CYS LEU ASP SER PHE HIS LYS SEQRES 26 A 471 LYS GLU GLN LEU LYS ASP PHE ASN TYR HIS CYS GLY GLU SEQRES 27 A 471 CYS ASN SER THR GLN ASP ALA ILE LYS GLN LEU GLY ILE SEQRES 28 A 471 HIS LYS LEU PRO SER VAL LEU VAL LEU GLN LEU LYS ARG SEQRES 29 A 471 PHE GLU HIS LEU LEU ASN GLY SER ASN ARG LYS LEU ASP SEQRES 30 A 471 ASP PHE ILE GLU PHE PRO THR TYR LEU ASN MET LYS ASN SEQRES 31 A 471 TYR CYS SER THR LYS GLU LYS ASP LYS HIS SER GLU ASN SEQRES 32 A 471 GLY LYS VAL PRO ASP ILE ILE TYR GLU LEU ILE GLY ILE SEQRES 33 A 471 VAL SER HIS LYS GLY THR VAL ASN GLU GLY HIS TYR ILE SEQRES 34 A 471 ALA PHE CYS LYS ILE SER GLY GLY GLN TRP PHE LYS PHE SEQRES 35 A 471 ASN ASP SER MET VAL SER SER ILE SER GLN GLU GLU VAL SEQRES 36 A 471 LEU LYS GLU GLN ALA TYR LEU LEU PHE TYR THR ILE ARG SEQRES 37 A 471 GLN VAL ASN SEQRES 1 B 99 MET THR GLU GLU THR ILE THR ILE ASP SER ILE SER ASN SEQRES 2 B 99 GLY ILE LEU ASN ASN LEU LEU THR THR LEU ILE GLN ASP SEQRES 3 B 99 ILE VAL ALA ARG GLU THR THR GLN GLN GLN LEU LEU LYS SEQRES 4 B 99 THR ARG TYR PRO ASP LEU ARG SER TYR TYR PHE ASP PRO SEQRES 5 B 99 ASN GLY SER LEU ASP ILE ASN GLY LEU GLN LYS GLN GLN SEQRES 6 B 99 GLU SER SER GLN TYR ILE HIS CYS GLU ASN CYS GLY ARG SEQRES 7 B 99 ASP VAL SER ALA ASN ARG LEU ALA ALA HIS LEU GLN ARG SEQRES 8 B 99 CYS LEU SER ARG GLY ALA ARG ARG SEQRES 1 C 96 MET THR MET ASP THR ALA GLN LEU LYS SER GLN ILE GLN SEQRES 2 C 96 GLN TYR LEU VAL GLU SER GLY ASN TYR GLU LEU ILE SER SEQRES 3 C 96 ASN GLU LEU LYS ALA ARG LEU LEU GLN GLU GLY TRP VAL SEQRES 4 C 96 ASP LYS VAL LYS ASP LEU THR LYS SER GLU MET ASN ILE SEQRES 5 C 96 ASN GLU SER THR ASN PHE THR GLN ILE LEU SER THR VAL SEQRES 6 C 96 GLU PRO LYS ALA LEU GLU MET VAL SER ASP SER THR ARG SEQRES 7 C 96 GLU THR VAL LEU LYS GLN ILE ARG GLU PHE LEU GLU GLU SEQRES 8 C 96 ILE VAL ASP THR GLN SEQRES 1 D 104 MET ARG SER GLY ASP ALA GLU ILE LYS GLY ILE LYS PRO SEQRES 2 D 104 LYS VAL ILE GLU GLU TYR SER LEU SER GLN GLY SER GLY SEQRES 3 D 104 PRO SER ASN ASP SER TRP LYS SER LEU MET SER SER ALA SEQRES 4 D 104 LYS ASP THR PRO LEU GLN TYR ASP HIS MET ASN ARG GLU SEQRES 5 D 104 SER LEU LYS LYS TYR PHE ASN PRO ASN ALA GLN LEU ILE SEQRES 6 D 104 GLU ASP PRO LEU ASP LYS PRO ILE GLN TYR ARG VAL CYS SEQRES 7 D 104 GLU LYS CYS GLY LYS PRO LEU ALA LEU THR ALA ILE VAL SEQRES 8 D 104 ASP HIS LEU GLU ASN HIS CYS ALA GLY ALA SER GLY LYS HET ZN A 472 1 HET ZN A 473 1 HET ZN A 474 1 HET ZN A 475 1 HET ZN A 476 1 HET ZN B 100 1 HET ZN D 105 1 HETNAM ZN ZINC ION FORMUL 5 ZN 7(ZN 2+) FORMUL 12 HOH *41(H2 O) HELIX 1 1 CYS A 4 PHE A 11 1 8 HELIX 2 2 SER A 16 HIS A 33 1 18 HELIX 3 3 VAL A 35 LEU A 41 1 7 HELIX 4 4 SER A 72 GLN A 80 1 9 HELIX 5 5 ILE A 106 ASP A 111 1 6 HELIX 6 6 ALA A 112 ALA A 115 5 4 HELIX 7 7 TYR A 117 LYS A 124 1 8 HELIX 8 8 SER A 129 GLY A 135 5 7 HELIX 9 9 THR A 145 HIS A 157 1 13 HELIX 10 10 ASN A 158 SER A 167 1 10 HELIX 11 11 HIS A 170 CYS A 174 5 5 HELIX 12 12 CYS A 182 GLY A 196 1 15 HELIX 13 13 GLN A 213 ASN A 227 1 15 HELIX 14 14 ALA A 238 LEU A 257 1 20 HELIX 15 15 CYS A 273 PHE A 279 1 7 HELIX 16 16 LYS A 315 LYS A 325 1 11 HELIX 17 17 SER A 451 LEU A 456 1 6 HELIX 18 18 ASP B 9 TYR B 42 1 34 HELIX 19 19 ARG B 84 LEU B 93 1 10 HELIX 20 20 SER C 10 SER C 19 1 10 HELIX 21 21 GLY C 20 GLU C 36 1 17 HELIX 22 22 GLY C 37 ASN C 53 1 17 HELIX 23 23 ASN C 57 MET C 72 1 16 HELIX 24 24 SER C 74 GLU C 90 1 17 HELIX 25 25 LYS D 12 TYR D 19 1 8 HELIX 26 26 SER D 31 SER D 34 5 4 HELIX 27 27 LEU D 35 LYS D 40 1 6 HELIX 28 28 ASN D 50 PHE D 58 1 9 HELIX 29 29 ALA D 89 ASN D 96 1 8 SHEET 1 A 5 CYS A 66 GLY A 67 0 SHEET 2 A 5 PHE A 58 CYS A 60 -1 N PHE A 58 O GLY A 67 SHEET 3 A 5 PHE A 85 ASN A 88 -1 O ILE A 87 N MET A 59 SHEET 4 A 5 LEU A 94 CYS A 96 -1 O PHE A 95 N GLY A 86 SHEET 5 A 5 ASP A 101 TYR A 102 -1 O ASP A 101 N CYS A 96 SHEET 1 B 3 LYS A 297 PHE A 303 0 SHEET 2 B 3 GLY A 281 VAL A 288 -1 N LEU A 283 O ASP A 301 SHEET 3 B 3 ILE A 346 LYS A 353 -1 O GLY A 350 N GLU A 284 SHEET 1 C 5 LEU A 306 ASP A 309 0 SHEET 2 C 5 VAL A 357 LYS A 363 1 O GLN A 361 N LEU A 306 SHEET 3 C 5 ALA A 460 VAL A 470 -1 O TYR A 461 N LEU A 362 SHEET 4 C 5 ILE A 409 THR A 422 -1 N ILE A 414 O PHE A 464 SHEET 5 C 5 TYR A 385 ASN A 387 -1 N LEU A 386 O TYR A 411 SHEET 1 D 7 LEU A 306 ASP A 309 0 SHEET 2 D 7 VAL A 357 LYS A 363 1 O GLN A 361 N LEU A 306 SHEET 3 D 7 ALA A 460 VAL A 470 -1 O TYR A 461 N LEU A 362 SHEET 4 D 7 ILE A 409 THR A 422 -1 N ILE A 414 O PHE A 464 SHEET 5 D 7 GLU A 425 LYS A 433 -1 O PHE A 431 N ILE A 416 SHEET 6 D 7 TRP A 439 PHE A 442 -1 O PHE A 442 N ALA A 430 SHEET 7 D 7 VAL A 447 ILE A 450 -1 O SER A 448 N LYS A 441 SHEET 1 E 2 PHE A 365 HIS A 367 0 SHEET 2 E 2 ASN A 373 LYS A 375 -1 O ARG A 374 N GLU A 366 SHEET 1 F 2 TYR B 70 HIS B 72 0 SHEET 2 F 2 ASP B 79 SER B 81 -1 O VAL B 80 N ILE B 71 SHEET 1 G 2 TYR D 75 VAL D 77 0 SHEET 2 G 2 PRO D 84 ALA D 86 -1 O LEU D 85 N ARG D 76 SSBOND 1 CYS A 4 CYS A 96 1555 1555 2.06 SSBOND 2 CYS A 4 CYS A 99 1555 1555 2.06 SSBOND 3 CYS A 60 CYS A 63 1555 1555 2.54 SSBOND 4 CYS A 174 CYS A 185 1555 1555 2.04 SSBOND 5 CYS B 76 CYS B 92 1555 1555 2.05 LINK SG CYS A 4 ZN ZN A 472 1555 1555 2.46 LINK ND1 HIS A 6 ZN ZN A 472 1555 1555 2.59 LINK SG CYS A 46 ZN ZN A 473 1555 1555 2.49 LINK SG CYS A 49 ZN ZN A 473 1555 1555 2.42 LINK SG CYS A 60 ZN ZN A 474 1555 1555 2.39 LINK SG CYS A 63 ZN ZN A 474 1555 1555 2.31 LINK SG CYS A 68 ZN ZN A 473 1555 1555 2.44 LINK ND1 HIS A 73 ZN ZN A 473 1555 1555 2.40 LINK NE2 HIS A 77 ZN ZN A 474 1555 1555 2.12 LINK ND1 HIS A 83 ZN ZN A 474 1555 1555 2.22 LINK SG CYS A 99 ZN ZN A 472 1555 1555 2.44 LINK N CYS A 99 ZN ZN A 472 1555 1555 2.63 LINK NE2 HIS A 170 ZN ZN A 475 1555 1555 2.04 LINK SG CYS A 182 ZN ZN A 475 1555 1555 2.70 LINK SG CYS A 185 ZN ZN A 475 1555 1555 2.75 LINK ND1 HIS A 250 ZN ZN A 476 1555 1555 2.23 LINK SG CYS A 271 ZN ZN A 476 1555 1555 2.62 LINK SG CYS A 273 ZN ZN A 476 1555 1555 2.46 LINK ND1 HIS A 276 ZN ZN A 476 1555 1555 2.28 LINK SG CYS B 73 ZN ZN B 100 1555 1555 2.23 LINK NE2 HIS B 88 ZN ZN B 100 1555 1555 2.14 LINK SG CYS B 92 ZN ZN B 100 1555 1555 2.73 LINK SG CYS D 78 ZN ZN D 105 1555 1555 2.34 LINK SG CYS D 81 ZN ZN D 105 1555 1555 2.69 LINK NE2 HIS D 93 ZN ZN D 105 1555 1555 2.24 LINK SG CYS D 98 ZN ZN D 105 1555 1555 2.52 SITE 1 AC1 5 CYS A 4 HIS A 6 CYS A 96 LYS A 98 SITE 2 AC1 5 CYS A 99 SITE 1 AC2 4 CYS A 46 CYS A 49 CYS A 68 HIS A 73 SITE 1 AC3 4 CYS A 60 CYS A 63 HIS A 77 HIS A 83 SITE 1 AC4 4 HIS A 170 CYS A 174 CYS A 182 CYS A 185 SITE 1 AC5 4 HIS A 250 CYS A 271 CYS A 273 HIS A 276 SITE 1 AC6 4 CYS B 73 CYS B 76 HIS B 88 CYS B 92 SITE 1 AC7 4 CYS D 78 CYS D 81 HIS D 93 CYS D 98 CRYST1 64.424 103.519 70.350 90.00 108.09 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015522 0.000000 0.005070 0.00000 SCALE2 0.000000 0.009660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014954 0.00000