HEADER TRANSFERASE 22-MAR-10 3M9G TITLE CRYSTAL STRUCTURE OF THE THREE-PASTA-DOMAIN OF A SER/THR KINASE FROM TITLE 2 STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 376-576; COMPND 5 SYNONYM: SER/THR KINASE STK1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 158879; SOURCE 4 STRAIN: N315; SOURCE 5 GENE: SA1063; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PASTA DOMAIN, SER/THR KINASE, STK1, STAPHYLOCOCCUS AUREUS, KEYWDS 2 EXTRACELLULAR DOMAIN, TRANSFERASE, ATP-BINDING, KINASE, NUCLEOTIDE- KEYWDS 3 BINDING, SERINE/THREONINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR P.PARACUELLOS,A.BALLANDRAS,X.ROBERT,C.CREZE,A.J.COZZONE,B.DUCLOS, AUTHOR 2 P.GOUET REVDAT 4 20-MAR-24 3M9G 1 REMARK LINK REVDAT 3 29-DEC-10 3M9G 1 JRNL REVDAT 2 10-NOV-10 3M9G 1 JRNL REVDAT 1 03-NOV-10 3M9G 0 JRNL AUTH P.PARACUELLOS,A.BALLANDRAS,X.ROBERT,R.KAHN,M.HERVE, JRNL AUTH 2 D.MENGIN-LECREULX,A.J.COZZONE,B.DUCLOS,P.GOUET JRNL TITL THE EXTENDED CONFORMATION OF THE 2.9-A CRYSTAL STRUCTURE OF JRNL TITL 2 THE THREE-PASTA DOMAIN OF A SER/THR KINASE FROM THE HUMAN JRNL TITL 3 PATHOGEN STAPHYLOCOCCUS AUREUS JRNL REF J.MOL.BIOL. V. 404 847 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20965199 JRNL DOI 10.1016/J.JMB.2010.10.012 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.PARACUELLOS,A.BALLANDRAS,X.ROBERT,A.J.COZZONE,B.DUCLOS, REMARK 1 AUTH 2 P.GOUET REMARK 1 TITL CRYSTALLIZATION AND INITIAL X-RAY DIFFRACTION STUDY OF THE REMARK 1 TITL 2 THREE PASTA DOMAINS OF THE SER/THR KINASE STK1 FROM THE REMARK 1 TITL 3 HUMAN PATHOGEN STAPHYLOCOCCUS AUREUS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 1187 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19923747 REMARK 1 DOI 10.1107/S174430910904250X REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 7151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 522 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.4660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.48000 REMARK 3 B22 (A**2) : -1.76000 REMARK 3 B33 (A**2) : 4.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.580 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.439 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.339 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.253 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.849 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1594 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2142 ; 2.609 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 200 ;10.288 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;41.626 ;27.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 318 ;24.916 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;14.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1170 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-08; 10-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID14-4; BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28200; 1.28253, 1.28314, REMARK 200 1.27557 REMARK 200 MONOCHROMATOR : SYNCHROTRON MIRRORS; SYNCHROTRON REMARK 200 MIRRORS REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8017 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.990 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 16.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43300 REMARK 200 FOR SHELL : 5.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE PH7.5, 0.8M ZN SULFATE REMARK 280 PH 5.23, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.37500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.37500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.37500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.93000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.60500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.37500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.93000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 393 ND2 ASN A 397 2.03 REMARK 500 O SER A 407 N LYS A 440 2.10 REMARK 500 O GLU A 532 O LYS A 534 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 422 C - N - CA ANGL. DEV. = -10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 377 138.21 155.57 REMARK 500 LYS A 396 3.88 -50.05 REMARK 500 ASN A 398 -24.29 86.43 REMARK 500 LYS A 403 98.48 94.17 REMARK 500 ASP A 410 -73.51 -37.08 REMARK 500 GLU A 414 121.42 -37.92 REMARK 500 ASN A 415 -17.97 96.28 REMARK 500 ASN A 423 143.48 100.64 REMARK 500 LYS A 440 63.87 -103.80 REMARK 500 GLU A 443 113.71 -34.11 REMARK 500 SER A 464 84.40 -64.89 REMARK 500 LEU A 465 -18.17 160.89 REMARK 500 ASN A 478 46.22 -106.57 REMARK 500 GLN A 479 -61.07 -172.97 REMARK 500 SER A 489 -81.29 -58.71 REMARK 500 ILE A 498 -1.38 -41.69 REMARK 500 ASP A 500 36.48 73.04 REMARK 500 GLU A 520 98.25 -58.80 REMARK 500 HIS A 521 108.78 91.42 REMARK 500 LYS A 522 145.23 139.09 REMARK 500 ALA A 530 -85.78 -64.29 REMARK 500 LEU A 531 -48.99 -28.25 REMARK 500 GLU A 532 -79.84 -67.13 REMARK 500 GLU A 533 109.19 -35.26 REMARK 500 LYS A 534 -178.58 105.21 REMARK 500 ASP A 546 51.41 -109.50 REMARK 500 ASP A 547 10.26 -160.70 REMARK 500 GLU A 550 89.26 -39.38 REMARK 500 ASP A 552 -153.80 -82.21 REMARK 500 SER A 557 -75.55 -68.51 REMARK 500 LYS A 559 97.13 -45.09 REMARK 500 ASP A 564 -143.61 -157.30 REMARK 500 GLU A 565 -139.50 -93.80 REMARK 500 SER A 567 -160.46 -67.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 409 ASP A 410 145.72 REMARK 500 THR A 421 PRO A 422 143.60 REMARK 500 GLY A 535 PHE A 536 -138.94 REMARK 500 LYS A 561 SER A 562 137.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 429 OE1 REMARK 620 2 ASP A 432 OD2 116.3 REMARK 620 3 ASP A 432 OD1 129.4 52.8 REMARK 620 4 HOH A1009 O 63.1 91.7 144.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 539 OE1 REMARK 620 2 HOH A1000 O 120.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 543 OE2 REMARK 620 2 GLU A 543 OE1 60.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 546 OD1 REMARK 620 2 GLY A 576 OXT 114.2 REMARK 620 3 HOH A1010 O 129.3 80.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2006 DBREF 3M9G A 376 576 UNP Q7A5Z8 Q7A5Z8_STAAN 376 576 SEQRES 1 A 201 TYR GLU GLU THR PRO ASP VAL ILE GLY LYS SER VAL LYS SEQRES 2 A 201 GLU ALA GLU GLN ILE PHE ASN LYS ASN ASN LEU LYS LEU SEQRES 3 A 201 GLY LYS ILE SER ARG SER TYR SER ASP LYS TYR PRO GLU SEQRES 4 A 201 ASN GLU ILE ILE LYS THR THR PRO ASN THR GLY GLU ARG SEQRES 5 A 201 VAL GLU ARG GLY ASP SER VAL ASP VAL VAL ILE SER LYS SEQRES 6 A 201 GLY PRO GLU LYS VAL LYS MET PRO ASN VAL ILE GLY LEU SEQRES 7 A 201 PRO LYS GLU GLU ALA LEU GLN LYS LEU LYS SER LEU GLY SEQRES 8 A 201 LEU LYS ASP VAL THR ILE GLU LYS VAL TYR ASN ASN GLN SEQRES 9 A 201 ALA PRO LYS GLY TYR ILE ALA ASN GLN SER VAL THR ALA SEQRES 10 A 201 ASN THR GLU ILE ALA ILE HIS ASP SER ASN ILE LYS LEU SEQRES 11 A 201 TYR GLU SER LEU GLY ILE LYS GLN VAL TYR VAL GLU ASP SEQRES 12 A 201 PHE GLU HIS LYS SER PHE SER LYS ALA LYS LYS ALA LEU SEQRES 13 A 201 GLU GLU LYS GLY PHE LYS VAL GLU SER LYS GLU GLU TYR SEQRES 14 A 201 SER ASP ASP ILE ASP GLU GLY ASP VAL ILE SER GLN SER SEQRES 15 A 201 PRO LYS GLY LYS SER VAL ASP GLU GLY SER THR ILE SER SEQRES 16 A 201 PHE VAL VAL SER LYS GLY HET ZN A2000 1 HET ZN A2001 1 HET ZN A2002 1 HET ZN A2003 1 HET ZN A2004 1 HET ZN A2005 1 HET ZN A2006 1 HETNAM ZN ZINC ION FORMUL 2 ZN 7(ZN 2+) FORMUL 9 HOH *65(H2 O) HELIX 1 1 SER A 386 LYS A 396 1 11 HELIX 2 2 PRO A 454 SER A 464 1 11 HELIX 3 3 SER A 523 GLU A 533 1 11 SHEET 1 A 3 LYS A 400 SER A 407 0 SHEET 2 A 3 SER A 433 SER A 439 1 O ILE A 438 N SER A 405 SHEET 3 A 3 ILE A 417 THR A 420 -1 N ILE A 418 O VAL A 437 SHEET 1 B 2 LYS A 444 LYS A 446 0 SHEET 2 B 2 GLU A 495 ALA A 497 -1 O ILE A 496 N VAL A 445 SHEET 1 C 3 VAL A 470 VAL A 475 0 SHEET 2 C 3 ILE A 503 SER A 508 1 O ILE A 503 N THR A 471 SHEET 3 C 3 ILE A 485 GLN A 488 -1 N ALA A 486 O TYR A 506 SHEET 1 D 2 VAL A 514 TYR A 515 0 SHEET 2 D 2 VAL A 563 ASP A 564 -1 O ASP A 564 N VAL A 514 SHEET 1 E 3 LYS A 537 GLU A 543 0 SHEET 2 E 3 THR A 568 SER A 574 1 O ILE A 569 N LYS A 537 SHEET 3 E 3 VAL A 553 GLN A 556 -1 N ILE A 554 O VAL A 572 LINK OE1 GLU A 429 ZN ZN A2001 1555 1555 2.09 LINK OD2 ASP A 432 ZN ZN A2001 1555 1555 1.95 LINK OD1 ASP A 432 ZN ZN A2001 1555 1555 2.64 LINK NE2 HIS A 521 ZN ZN A2006 1555 1555 2.04 LINK OE1 GLU A 539 ZN ZN A2000 1555 1555 1.81 LINK OE2 GLU A 543 ZN ZN A2003 1555 1555 2.00 LINK OE1 GLU A 543 ZN ZN A2003 1555 1555 2.27 LINK OD1 ASP A 546 ZN ZN A2002 1555 1555 1.82 LINK OXT GLY A 576 ZN ZN A2002 1555 1555 2.57 LINK O HOH A1000 ZN ZN A2000 1555 1555 2.68 LINK O HOH A1009 ZN ZN A2001 1555 1555 2.50 LINK O HOH A1010 ZN ZN A2002 1555 1555 1.84 LINK O HOH A1011 ZN ZN A2004 1555 1555 2.33 SITE 1 AC1 3 GLU A 416 GLU A 539 HOH A1000 SITE 1 AC2 4 GLU A 429 ASP A 432 GLU A 457 HOH A1009 SITE 1 AC3 4 ASP A 469 ASP A 546 GLY A 576 HOH A1010 SITE 1 AC4 4 HIS A 499 ASP A 500 GLU A 543 ASP A 547 SITE 1 AC5 3 ASP A 552 HOH A1011 HOH A1065 SITE 1 AC6 1 ASP A 381 SITE 1 AC7 1 HIS A 521 CRYST1 91.860 101.210 74.750 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013378 0.00000