HEADER LYASE 25-MAR-10 3MBD TITLE CRYSTAL STRUCTURE OF FRUCTOSE BISPHOSPHATE ALDOLASE FROM TITLE 2 ENCEPHALITOZOON CUNICULI, BOUND TO PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 3 ORGANISM_COMMON: MICROSPORIDIAN PARASITE; SOURCE 4 ORGANISM_TAXID: 6035; SOURCE 5 GENE: ECU01_0240; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS ALDOLASE, GLYCOLYSIS, LYASE, SCHIFF BASE, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-SEP-23 3MBD 1 REMARK SEQADV REVDAT 2 21-SEP-11 3MBD 1 JRNL VERSN REVDAT 1 14-APR-10 3MBD 0 JRNL AUTH A.GARDBERG,B.SANKARAN,D.DAVIES,J.BHANDARI,B.STAKER,L.STEWART JRNL TITL STRUCTURE OF FRUCTOSE BISPHOSPHATE ALDOLASE FROM JRNL TITL 2 ENCEPHALITOZOON CUNICULI. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1055 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21904050 JRNL DOI 10.1107/S1744309111021841 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2631 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : -0.98000 REMARK 3 B33 (A**2) : 1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.361 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2738 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1923 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3704 ; 1.395 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4702 ; 0.913 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 5.804 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;37.385 ;24.052 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;13.748 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;22.125 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3030 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 556 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1691 ; 0.763 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 703 ; 0.208 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2728 ; 1.371 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1047 ; 2.234 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 965 ; 3.645 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4500 -26.8760 3.8880 REMARK 3 T TENSOR REMARK 3 T11: 0.2408 T22: 0.1206 REMARK 3 T33: 0.1611 T12: 0.0870 REMARK 3 T13: -0.0733 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 7.6286 L22: 6.9103 REMARK 3 L33: 7.2855 L12: 3.3933 REMARK 3 L13: 2.5794 L23: 2.9276 REMARK 3 S TENSOR REMARK 3 S11: 0.3083 S12: -0.5179 S13: -0.6935 REMARK 3 S21: 0.8926 S22: 0.0509 S23: -0.6383 REMARK 3 S31: 0.5516 S32: 0.3266 S33: -0.3592 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -26.0290 -24.3590 4.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.1392 T22: 0.1051 REMARK 3 T33: 0.1342 T12: -0.0865 REMARK 3 T13: 0.0395 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 2.6398 L22: 1.5641 REMARK 3 L33: 1.9000 L12: 0.2055 REMARK 3 L13: -0.8225 L23: 0.2977 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.1292 S13: -0.0402 REMARK 3 S21: 0.1269 S22: 0.0765 S23: 0.2853 REMARK 3 S31: 0.1236 S32: -0.1260 S33: -0.0558 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6890 -9.8440 -3.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.0346 T22: 0.0210 REMARK 3 T33: 0.0506 T12: -0.0176 REMARK 3 T13: 0.0179 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.9919 L22: 1.9921 REMARK 3 L33: 1.8852 L12: -0.1403 REMARK 3 L13: -0.0529 L23: -0.2057 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: -0.0581 S13: 0.0757 REMARK 3 S21: 0.1116 S22: 0.0084 S23: 0.1009 REMARK 3 S31: -0.0420 S32: -0.0972 S33: -0.0407 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0660 -20.4700 -17.5640 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: 0.0536 REMARK 3 T33: 0.0675 T12: -0.0326 REMARK 3 T13: -0.0234 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.4073 L22: 1.0821 REMARK 3 L33: 1.0293 L12: 0.0798 REMARK 3 L13: -0.1363 L23: 0.0657 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.1750 S13: -0.0092 REMARK 3 S21: -0.1220 S22: 0.0123 S23: 0.1345 REMARK 3 S31: 0.0987 S32: -0.1358 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): -29.7640 -31.8580 -6.4530 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.1562 REMARK 3 T33: 0.2196 T12: -0.1394 REMARK 3 T13: -0.0180 T23: 0.0530 REMARK 3 L TENSOR REMARK 3 L11: 2.0792 L22: 1.4230 REMARK 3 L33: 3.2971 L12: -0.3408 REMARK 3 L13: -1.9024 L23: 0.9270 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: 0.1006 S13: -0.2648 REMARK 3 S21: 0.1076 S22: 0.0233 S23: 0.2621 REMARK 3 S31: 0.2626 S32: -0.2633 S33: 0.0094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35720 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1QO5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 90% PACT SCREEN CONDITION F10, 10% REMARK 280 ADDITIVE SCREEN G12: 90MM BIS-TRIS PROPANE PH 6.5, 18% PEG 3350, REMARK 280 18 MM NAKHPO4, 10 MM UREA, PROTEIN AT 24.7 MG/ML, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.11500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.11500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.98000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.80500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.98000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.80500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.11500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.98000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.80500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.11500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.98000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.80500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -31.11500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 338 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 ASN A 232 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 61 CE NZ REMARK 480 LYS A 234 CD CE NZ REMARK 480 ARG A 282 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 61 CD LYS A 61 CE -0.305 REMARK 500 LYS A 234 CG LYS A 234 CD -0.409 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 234 CB - CG - CD ANGL. DEV. = 27.4 DEGREES REMARK 500 ARG A 282 CG - CD - NE ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 110 -137.20 53.86 REMARK 500 LYS A 112 10.51 80.08 REMARK 500 SER A 290 -155.81 -131.95 REMARK 500 ALA A 294 -80.51 -100.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 340 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MBF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FRUCTOSE BISPHOSPHATE ALDOLASE FROM REMARK 900 ENCEPHALITOZOON CUNICULI, BOUND TO FRUCTOSE 1,6-BISPHOSPHATE REMARK 900 RELATED ID: ENCUA.00440.A RELATED DB: TARGETDB DBREF 3MBD A 1 338 UNP Q8SSM8 ALF_ENCCU 1 338 SEQADV 3MBD GLY A -3 UNP Q8SSM8 EXPRESSION TAG SEQADV 3MBD PRO A -2 UNP Q8SSM8 EXPRESSION TAG SEQADV 3MBD GLY A -1 UNP Q8SSM8 EXPRESSION TAG SEQADV 3MBD SER A 0 UNP Q8SSM8 EXPRESSION TAG SEQRES 1 A 342 GLY PRO GLY SER MET MET ASP CYS ASP HIS LEU LEU ARG SEQRES 2 A 342 LEU GLY MET THR ALA LYS LYS ILE LEU GLU ASN GLY LYS SEQRES 3 A 342 GLY ILE LEU ALA ALA ASP GLU THR PRO LYS THR LEU GLY SEQRES 4 A 342 ARG ARG PHE GLU LYS LEU GLY ILE THR ASN THR GLU GLU SEQRES 5 A 342 ASN ARG ARG LYS PHE ARG GLU ILE LEU PHE SER THR LYS SEQRES 6 A 342 GLY ILE GLU ARG TYR ILE GLY GLY VAL ILE LEU ASN GLN SEQRES 7 A 342 GLU THR PHE GLU GLN THR SER GLY SER GLY VAL PRO LEU SEQRES 8 A 342 THR GLU LEU LEU LYS LYS LYS GLY ILE GLU ILE GLY ILE SEQRES 9 A 342 LYS LEU ASP LYS GLY LEU ILE ASP TYR LYS GLU LYS GLU SEQRES 10 A 342 LYS ILE SER VAL GLY LEU GLU ASP LEU ASP LEU ARG CYS SEQRES 11 A 342 LYS SER SER ALA PHE LYS ASP ALA THR PHE ALA LYS TRP SEQRES 12 A 342 ARG SER LEU PHE TYR PHE TYR ASP GLY ILE PRO SER GLU SEQRES 13 A 342 ASP CYS ILE ASN GLU ASN CYS SER ILE LEU ALA LYS TYR SEQRES 14 A 342 ALA ILE ILE CYS GLN LYS ASN GLY LEU VAL PRO ILE VAL SEQRES 15 A 342 GLU PRO GLU VAL PHE LEU GLU GLY ASP TYR SER MET LYS SEQRES 16 A 342 ARG SER TYR GLU VAL THR ARG GLN ILE LEU SER THR LEU SEQRES 17 A 342 MET LYS TYR LEU ASN TYR GLU LEU VAL TYR ILE PRO GLY SEQRES 18 A 342 VAL LEU ILE LYS ALA SER TYR VAL THR SER GLY GLN LEU SEQRES 19 A 342 SER ASN GLU LYS TYR THR PRO LYS LYS VAL ALA THR PHE SEQRES 20 A 342 THR LEU ARG ALA LEU LEU SER THR ILE PRO CYS GLY ILE SEQRES 21 A 342 PRO GLY ILE VAL PHE LEU SER GLY GLY HIS GLY SER GLU SEQRES 22 A 342 ASP ALA ILE GLY PHE LEU ASN ALA ILE ASN MET GLU ARG SEQRES 23 A 342 GLY CYS ARG THR TRP SER LEU SER PHE SER PHE ALA ARG SEQRES 24 A 342 ALA LEU THR ASP GLY VAL LEU GLU THR TRP ARG GLY ASP SEQRES 25 A 342 ASP SER ASN ILE GLU GLU ALA GLN LYS ILE LEU LEU GLU SEQRES 26 A 342 THR SER PHE LYS ALA CYS ARG GLY ALA GLU GLY LYS LEU SEQRES 27 A 342 TRP ASP GLN GLU HET PO4 A 339 5 HET CL A 340 1 HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 CL CL 1- FORMUL 4 HOH *192(H2 O) HELIX 1 1 ASP A 3 GLU A 19 1 17 HELIX 2 2 ASN A 20 LYS A 22 5 3 HELIX 3 3 THR A 30 LEU A 41 1 12 HELIX 4 4 THR A 46 SER A 59 1 14 HELIX 5 5 GLY A 62 ARG A 65 5 4 HELIX 6 6 GLN A 74 GLN A 79 5 6 HELIX 7 7 PRO A 86 LYS A 94 1 9 HELIX 8 8 GLY A 118 GLU A 120 5 3 HELIX 9 9 ASP A 121 LYS A 127 1 7 HELIX 10 10 SER A 128 LYS A 132 5 5 HELIX 11 11 SER A 151 ASN A 172 1 22 HELIX 12 12 SER A 189 GLU A 211 1 23 HELIX 13 13 TYR A 214 GLY A 217 5 4 HELIX 14 14 THR A 236 ILE A 252 1 17 HELIX 15 15 GLY A 267 GLU A 281 1 15 HELIX 16 16 ALA A 294 ARG A 306 1 13 HELIX 17 17 ASP A 308 SER A 310 5 3 HELIX 18 18 ASN A 311 GLU A 331 1 21 SHEET 1 A 9 GLY A 23 ALA A 27 0 SHEET 2 A 9 ILE A 67 LEU A 72 1 O GLY A 68 N GLY A 23 SHEET 3 A 9 GLU A 97 LYS A 101 1 O GLY A 99 N VAL A 70 SHEET 4 A 9 PHE A 136 PHE A 143 1 O LYS A 138 N ILE A 100 SHEET 5 A 9 VAL A 175 VAL A 182 1 O GLU A 181 N PHE A 143 SHEET 6 A 9 LEU A 219 ALA A 222 1 O LYS A 221 N VAL A 178 SHEET 7 A 9 GLY A 258 PHE A 261 1 O VAL A 260 N ILE A 220 SHEET 8 A 9 SER A 288 PHE A 293 1 O SER A 290 N ILE A 259 SHEET 9 A 9 GLY A 23 ALA A 27 1 N ILE A 24 O PHE A 291 SHEET 1 B 2 LEU A 106 TYR A 109 0 SHEET 2 B 2 GLU A 113 SER A 116 -1 O ILE A 115 N ILE A 107 CISPEP 1 ILE A 149 PRO A 150 0 10.00 SITE 1 AC1 9 LYS A 221 SER A 263 GLY A 264 SER A 292 SITE 2 AC1 9 PHE A 293 ALA A 294 ARG A 295 HOH A 455 SITE 3 AC1 9 HOH A 488 SITE 1 AC2 4 GLU A 29 THR A 30 THR A 33 LYS A 101 CRYST1 121.960 137.610 62.230 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008199 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016069 0.00000