HEADER TRANSFERASE 25-MAR-10 3MBI TITLE CRYSTAL STRUCTURE OF THE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) SYNTHETASE TITLE 2 FROM THERMOPLASMA VOLCANIUM IN COMPLEX WITH ADP-MG2+ AND RIBOSE 5- TITLE 3 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-PHOSPHATE PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RPPK, PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE, P-RIB-PP COMPND 5 SYNTHASE, PRPP SYNTHASE; COMPND 6 EC: 2.7.6.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA VOLCANIUM; SOURCE 3 ORGANISM_TAXID: 50339; SOURCE 4 STRAIN: ATCC51530; SOURCE 5 GENE: PRS, TV0197, TVG0201915, TVN0197; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP16 KEYWDS PHOSPHORIBOSYL TRANSFERASE, ATP ANALOG BINDING, RIBOSE 5-PHOSPHATE KEYWDS 2 BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.T.CHERNEY,M.M.CHERNEY,C.R.GAREN,M.N.G.JAMES REVDAT 4 06-SEP-23 3MBI 1 HETSYN REVDAT 3 29-JUL-20 3MBI 1 REMARK SEQADV LINK SITE REVDAT 3 2 1 ATOM REVDAT 2 25-APR-12 3MBI 1 JRNL VERSN REVDAT 1 20-APR-11 3MBI 0 JRNL AUTH M.M.CHERNEY,L.T.CHERNEY,C.R.GAREN,M.N.JAMES JRNL TITL THE STRUCTURES OF THERMOPLASMA VOLCANIUM PHOSPHORIBOSYL JRNL TITL 2 PYROPHOSPHATE SYNTHETASE BOUND TO RIBOSE-5-PHOSPHATE AND ATP JRNL TITL 3 ANALOGS. JRNL REF J.MOL.BIOL. V. 413 844 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21963988 JRNL DOI 10.1016/J.JMB.2011.09.007 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_343) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 105818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 5260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.4732 - 5.5655 0.98 3484 202 0.1671 0.1851 REMARK 3 2 5.5655 - 4.4250 0.99 3490 162 0.1442 0.1456 REMARK 3 3 4.4250 - 3.8679 0.99 3436 192 0.1338 0.1682 REMARK 3 4 3.8679 - 3.5152 0.99 3433 178 0.1489 0.1736 REMARK 3 5 3.5152 - 3.2638 0.99 3441 153 0.1619 0.2178 REMARK 3 6 3.2638 - 3.0717 0.99 3398 177 0.1736 0.2122 REMARK 3 7 3.0717 - 2.9181 0.99 3401 173 0.1853 0.2512 REMARK 3 8 2.9181 - 2.7913 0.98 3384 186 0.1838 0.2447 REMARK 3 9 2.7913 - 2.6839 0.98 3357 202 0.1788 0.2341 REMARK 3 10 2.6839 - 2.5914 0.98 3376 161 0.1710 0.2207 REMARK 3 11 2.5914 - 2.5104 0.98 3378 173 0.1726 0.2363 REMARK 3 12 2.5104 - 2.4387 0.98 3371 181 0.1766 0.2381 REMARK 3 13 2.4387 - 2.3746 0.98 3333 162 0.1725 0.2262 REMARK 3 14 2.3746 - 2.3167 0.98 3362 198 0.1636 0.2230 REMARK 3 15 2.3167 - 2.2641 0.98 3346 187 0.1719 0.2099 REMARK 3 16 2.2641 - 2.2159 0.98 3314 172 0.1718 0.2298 REMARK 3 17 2.2159 - 2.1716 0.98 3323 186 0.1757 0.2186 REMARK 3 18 2.1716 - 2.1306 0.97 3337 167 0.1694 0.2316 REMARK 3 19 2.1306 - 2.0926 0.97 3352 165 0.1791 0.2336 REMARK 3 20 2.0926 - 2.0572 0.97 3289 158 0.1744 0.2273 REMARK 3 21 2.0572 - 2.0240 0.97 3403 156 0.1777 0.2100 REMARK 3 22 2.0240 - 1.9929 0.97 3274 173 0.1866 0.2255 REMARK 3 23 1.9929 - 1.9636 0.97 3323 180 0.2075 0.2597 REMARK 3 24 1.9636 - 1.9359 0.97 3350 149 0.2109 0.3096 REMARK 3 25 1.9359 - 1.9098 0.97 3317 169 0.2184 0.2653 REMARK 3 26 1.9098 - 1.8850 0.97 3300 164 0.2218 0.2755 REMARK 3 27 1.8850 - 1.8614 0.97 3305 186 0.2334 0.2793 REMARK 3 28 1.8614 - 1.8390 0.97 3309 166 0.2240 0.2919 REMARK 3 29 1.8390 - 1.8176 0.96 3190 204 0.2422 0.3032 REMARK 3 30 1.8176 - 1.7970 0.93 3182 178 0.2624 0.3064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 39.23 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 9391 REMARK 3 ANGLE : 1.002 12737 REMARK 3 CHIRALITY : 0.074 1449 REMARK 3 PLANARITY : 0.004 1605 REMARK 3 DIHEDRAL : 14.395 3625 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000058345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105923 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.797 REMARK 200 RESOLUTION RANGE LOW (A) : 25.471 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : 0.71000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3LPN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG600, 0.1M HEPES, 10% MPD, 0.1% REMARK 280 LDAO, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.92050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C -1 REMARK 465 GLY C 0 REMARK 465 SER D -1 REMARK 465 GLY D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 92 69.02 -109.59 REMARK 500 ASP A 188 -169.02 -160.48 REMARK 500 SER A 214 -89.54 -110.69 REMARK 500 GLN B 92 70.87 -114.46 REMARK 500 SER B 214 -87.45 -109.19 REMARK 500 GLN C 92 70.99 -110.37 REMARK 500 SER C 214 -84.11 -104.97 REMARK 500 ASN C 245 126.65 -39.40 REMARK 500 GLN D 92 69.68 -113.38 REMARK 500 VAL D 154 -82.42 -116.32 REMARK 500 ASP D 155 -65.18 120.77 REMARK 500 SER D 214 -82.69 -113.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 287 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 288 O2A REMARK 620 2 ADP A 288 O2B 70.1 REMARK 620 3 HOH A 292 O 62.3 132.2 REMARK 620 4 HOH A 293 O 85.3 62.7 115.5 REMARK 620 5 HOH A 294 O 139.4 112.6 106.3 63.9 REMARK 620 6 HOH A 303 O 98.4 75.3 106.5 133.8 121.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 287 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 288 O2A REMARK 620 2 ADP B 288 O2B 84.2 REMARK 620 3 HOH B 291 O 59.8 144.0 REMARK 620 4 HOH B 293 O 109.8 88.7 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 289 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP C 286 O2B REMARK 620 2 ADP C 286 O2A 89.6 REMARK 620 3 HOH C 343 O 162.4 100.5 REMARK 620 4 HOH C1252 O 113.8 106.2 77.4 REMARK 620 5 HOH C1253 O 86.5 83.9 80.3 156.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 287 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP D 288 O2A REMARK 620 2 ADP D 288 O3B 73.2 REMARK 620 3 HOH D 289 O 106.4 109.3 REMARK 620 4 HOH D 290 O 106.6 168.1 82.3 REMARK 620 5 HOH D 295 O 80.9 77.4 171.1 90.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LRT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHOSPHORIBOSYL PYROPHOSPHATE (PRPP) REMARK 900 SYNTHETASE FROM THERMOPLASMA VOLCANIUM IN COMPLEX WITH ADP REMARK 900 RELATED ID: 3LPN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHOSPHORIBOSYLPYROPHOSPHATE (PRPP) REMARK 900 SYNTHETASE FROM THERMOPLASMA VOLCANIUM IN COMPLEX WITH AN ATP REMARK 900 ANALOG (AMPCPP) REMARK 900 RELATED ID: 1U9Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHOSPHORIBOSYL DIPHOSPHATE SYNTHASE FROM REMARK 900 METHANOCALDOCOCCUS JANNASCHII REMARK 900 RELATED ID: 1U9Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHOSPHORIBOSYL DIPHOSPHATE SYNTHASE COMPLEXED REMARK 900 WITH AMP AND RIBOSE 5-PHOSPHATE REMARK 900 RELATED ID: 1IBS RELATED DB: PDB REMARK 900 PHOSPHORIBOSYLDIPHOSPHATE SYNTHETASE IN COMPLEX WITH CADMIUM IONS REMARK 900 RELATED ID: 2HCR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE REMARK 900 1 IN COMPLEX WITH AMP(ATP), CADMIUM AND SULFATE ION DBREF 3MBI A 1 285 UNP Q97CA5 KPRS_THEVO 1 285 DBREF 3MBI B 1 285 UNP Q97CA5 KPRS_THEVO 1 285 DBREF 3MBI C 1 285 UNP Q97CA5 KPRS_THEVO 1 285 DBREF 3MBI D 1 285 UNP Q97CA5 KPRS_THEVO 1 285 SEQADV 3MBI SER A -1 UNP Q97CA5 EXPRESSION TAG SEQADV 3MBI GLY A 0 UNP Q97CA5 EXPRESSION TAG SEQADV 3MBI SER B -1 UNP Q97CA5 EXPRESSION TAG SEQADV 3MBI GLY B 0 UNP Q97CA5 EXPRESSION TAG SEQADV 3MBI SER C -1 UNP Q97CA5 EXPRESSION TAG SEQADV 3MBI GLY C 0 UNP Q97CA5 EXPRESSION TAG SEQADV 3MBI SER D -1 UNP Q97CA5 EXPRESSION TAG SEQADV 3MBI GLY D 0 UNP Q97CA5 EXPRESSION TAG SEQRES 1 A 287 SER GLY MET LYS ILE ILE ALA LEU ARG SER SER LEU LYS SEQRES 2 A 287 LEU ALA ALA ARG ILE ALA GLU GLU LEU LYS THR GLU PRO SEQRES 3 A 287 VAL MET PRO ASP GLU ARG ARG PHE PRO ASP GLY GLU LEU SEQRES 4 A 287 TYR LEU ARG TYR ASP GLU ASP LEU THR GLY HIS ASN ILE SEQRES 5 A 287 PHE ILE ILE GLY ASN THR HIS SER ASP ALA GLU VAL MET SEQRES 6 A 287 GLU MET ILE LEU THR LEU SER ALA ILE GLN ASP TYR ARG SEQRES 7 A 287 THR LYS SER VAL ASN ILE ILE ALA PRO TYR TYR GLY TYR SEQRES 8 A 287 ALA ARG GLN HIS GLN ARG TYR LYS ASN GLY GLU PRO ILE SEQRES 9 A 287 SER SER GLN ILE LEU THR GLU ILE TYR SER SER TYR SER SEQRES 10 A 287 ASN SER ILE ALA THR VAL ASP ILE HIS ASP GLU LYS THR SEQRES 11 A 287 LEU SER TYR SER LYS VAL LYS PHE SER ASP LEU HIS ALA SEQRES 12 A 287 ASN ASP ALA ILE VAL ARG TYR TYR LYS ASN VAL ASP VAL SEQRES 13 A 287 ASP TYR VAL VAL SER PRO ASP ASP GLY GLY LEU ALA ARG SEQRES 14 A 287 VAL ALA ASP ILE SER ALA LYS LEU GLY LYS LYS HIS PHE SEQRES 15 A 287 PHE ILE GLU LYS LYS ARG ILE ASP ASP ARG THR VAL GLU SEQRES 16 A 287 MET LYS VAL PRO ASN VAL ASP VAL ASN GLY LYS LYS LEU SEQRES 17 A 287 LEU ILE VAL ASP ASP ILE ILE SER THR GLY GLY THR ILE SEQRES 18 A 287 ALA LYS SER SER GLY LEU LEU ARG GLU LYS GLY ALA SER SEQRES 19 A 287 LYS ILE TYR VAL SER ALA VAL HIS GLY LEU PHE VAL ASN SEQRES 20 A 287 GLY SER GLU ASN LYS ILE LEU GLN ASN ALA ASP GLU ILE SEQRES 21 A 287 HIS VAL THR ASP THR VAL GLU SER LYS PHE SER ASP ILE SEQRES 22 A 287 SER VAL TYR GLN GLU VAL CYS ASN TYR ILE ARG ASP ILE SEQRES 23 A 287 ASP SEQRES 1 B 287 SER GLY MET LYS ILE ILE ALA LEU ARG SER SER LEU LYS SEQRES 2 B 287 LEU ALA ALA ARG ILE ALA GLU GLU LEU LYS THR GLU PRO SEQRES 3 B 287 VAL MET PRO ASP GLU ARG ARG PHE PRO ASP GLY GLU LEU SEQRES 4 B 287 TYR LEU ARG TYR ASP GLU ASP LEU THR GLY HIS ASN ILE SEQRES 5 B 287 PHE ILE ILE GLY ASN THR HIS SER ASP ALA GLU VAL MET SEQRES 6 B 287 GLU MET ILE LEU THR LEU SER ALA ILE GLN ASP TYR ARG SEQRES 7 B 287 THR LYS SER VAL ASN ILE ILE ALA PRO TYR TYR GLY TYR SEQRES 8 B 287 ALA ARG GLN HIS GLN ARG TYR LYS ASN GLY GLU PRO ILE SEQRES 9 B 287 SER SER GLN ILE LEU THR GLU ILE TYR SER SER TYR SER SEQRES 10 B 287 ASN SER ILE ALA THR VAL ASP ILE HIS ASP GLU LYS THR SEQRES 11 B 287 LEU SER TYR SER LYS VAL LYS PHE SER ASP LEU HIS ALA SEQRES 12 B 287 ASN ASP ALA ILE VAL ARG TYR TYR LYS ASN VAL ASP VAL SEQRES 13 B 287 ASP TYR VAL VAL SER PRO ASP ASP GLY GLY LEU ALA ARG SEQRES 14 B 287 VAL ALA ASP ILE SER ALA LYS LEU GLY LYS LYS HIS PHE SEQRES 15 B 287 PHE ILE GLU LYS LYS ARG ILE ASP ASP ARG THR VAL GLU SEQRES 16 B 287 MET LYS VAL PRO ASN VAL ASP VAL ASN GLY LYS LYS LEU SEQRES 17 B 287 LEU ILE VAL ASP ASP ILE ILE SER THR GLY GLY THR ILE SEQRES 18 B 287 ALA LYS SER SER GLY LEU LEU ARG GLU LYS GLY ALA SER SEQRES 19 B 287 LYS ILE TYR VAL SER ALA VAL HIS GLY LEU PHE VAL ASN SEQRES 20 B 287 GLY SER GLU ASN LYS ILE LEU GLN ASN ALA ASP GLU ILE SEQRES 21 B 287 HIS VAL THR ASP THR VAL GLU SER LYS PHE SER ASP ILE SEQRES 22 B 287 SER VAL TYR GLN GLU VAL CYS ASN TYR ILE ARG ASP ILE SEQRES 23 B 287 ASP SEQRES 1 C 287 SER GLY MET LYS ILE ILE ALA LEU ARG SER SER LEU LYS SEQRES 2 C 287 LEU ALA ALA ARG ILE ALA GLU GLU LEU LYS THR GLU PRO SEQRES 3 C 287 VAL MET PRO ASP GLU ARG ARG PHE PRO ASP GLY GLU LEU SEQRES 4 C 287 TYR LEU ARG TYR ASP GLU ASP LEU THR GLY HIS ASN ILE SEQRES 5 C 287 PHE ILE ILE GLY ASN THR HIS SER ASP ALA GLU VAL MET SEQRES 6 C 287 GLU MET ILE LEU THR LEU SER ALA ILE GLN ASP TYR ARG SEQRES 7 C 287 THR LYS SER VAL ASN ILE ILE ALA PRO TYR TYR GLY TYR SEQRES 8 C 287 ALA ARG GLN HIS GLN ARG TYR LYS ASN GLY GLU PRO ILE SEQRES 9 C 287 SER SER GLN ILE LEU THR GLU ILE TYR SER SER TYR SER SEQRES 10 C 287 ASN SER ILE ALA THR VAL ASP ILE HIS ASP GLU LYS THR SEQRES 11 C 287 LEU SER TYR SER LYS VAL LYS PHE SER ASP LEU HIS ALA SEQRES 12 C 287 ASN ASP ALA ILE VAL ARG TYR TYR LYS ASN VAL ASP VAL SEQRES 13 C 287 ASP TYR VAL VAL SER PRO ASP ASP GLY GLY LEU ALA ARG SEQRES 14 C 287 VAL ALA ASP ILE SER ALA LYS LEU GLY LYS LYS HIS PHE SEQRES 15 C 287 PHE ILE GLU LYS LYS ARG ILE ASP ASP ARG THR VAL GLU SEQRES 16 C 287 MET LYS VAL PRO ASN VAL ASP VAL ASN GLY LYS LYS LEU SEQRES 17 C 287 LEU ILE VAL ASP ASP ILE ILE SER THR GLY GLY THR ILE SEQRES 18 C 287 ALA LYS SER SER GLY LEU LEU ARG GLU LYS GLY ALA SER SEQRES 19 C 287 LYS ILE TYR VAL SER ALA VAL HIS GLY LEU PHE VAL ASN SEQRES 20 C 287 GLY SER GLU ASN LYS ILE LEU GLN ASN ALA ASP GLU ILE SEQRES 21 C 287 HIS VAL THR ASP THR VAL GLU SER LYS PHE SER ASP ILE SEQRES 22 C 287 SER VAL TYR GLN GLU VAL CYS ASN TYR ILE ARG ASP ILE SEQRES 23 C 287 ASP SEQRES 1 D 287 SER GLY MET LYS ILE ILE ALA LEU ARG SER SER LEU LYS SEQRES 2 D 287 LEU ALA ALA ARG ILE ALA GLU GLU LEU LYS THR GLU PRO SEQRES 3 D 287 VAL MET PRO ASP GLU ARG ARG PHE PRO ASP GLY GLU LEU SEQRES 4 D 287 TYR LEU ARG TYR ASP GLU ASP LEU THR GLY HIS ASN ILE SEQRES 5 D 287 PHE ILE ILE GLY ASN THR HIS SER ASP ALA GLU VAL MET SEQRES 6 D 287 GLU MET ILE LEU THR LEU SER ALA ILE GLN ASP TYR ARG SEQRES 7 D 287 THR LYS SER VAL ASN ILE ILE ALA PRO TYR TYR GLY TYR SEQRES 8 D 287 ALA ARG GLN HIS GLN ARG TYR LYS ASN GLY GLU PRO ILE SEQRES 9 D 287 SER SER GLN ILE LEU THR GLU ILE TYR SER SER TYR SER SEQRES 10 D 287 ASN SER ILE ALA THR VAL ASP ILE HIS ASP GLU LYS THR SEQRES 11 D 287 LEU SER TYR SER LYS VAL LYS PHE SER ASP LEU HIS ALA SEQRES 12 D 287 ASN ASP ALA ILE VAL ARG TYR TYR LYS ASN VAL ASP VAL SEQRES 13 D 287 ASP TYR VAL VAL SER PRO ASP ASP GLY GLY LEU ALA ARG SEQRES 14 D 287 VAL ALA ASP ILE SER ALA LYS LEU GLY LYS LYS HIS PHE SEQRES 15 D 287 PHE ILE GLU LYS LYS ARG ILE ASP ASP ARG THR VAL GLU SEQRES 16 D 287 MET LYS VAL PRO ASN VAL ASP VAL ASN GLY LYS LYS LEU SEQRES 17 D 287 LEU ILE VAL ASP ASP ILE ILE SER THR GLY GLY THR ILE SEQRES 18 D 287 ALA LYS SER SER GLY LEU LEU ARG GLU LYS GLY ALA SER SEQRES 19 D 287 LYS ILE TYR VAL SER ALA VAL HIS GLY LEU PHE VAL ASN SEQRES 20 D 287 GLY SER GLU ASN LYS ILE LEU GLN ASN ALA ASP GLU ILE SEQRES 21 D 287 HIS VAL THR ASP THR VAL GLU SER LYS PHE SER ASP ILE SEQRES 22 D 287 SER VAL TYR GLN GLU VAL CYS ASN TYR ILE ARG ASP ILE SEQRES 23 D 287 ASP HET PO4 A 286 5 HET MG A 287 1 HET ADP A 288 27 HET PO4 B 286 5 HET MG B 287 1 HET ADP B 288 27 HET ADP C 286 27 HET PO4 C 287 5 HET MG C 289 1 HET HSX D 286 14 HET MG D 287 1 HET ADP D 288 27 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM HSX 5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETSYN HSX 5-O-PHOSPHONO-ALPHA-D-RIBOSE; 5-O-PHOSPHONO-D-RIBOSE; HETSYN 2 HSX 5-O-PHOSPHONO-RIBOSE FORMUL 5 PO4 3(O4 P 3-) FORMUL 6 MG 4(MG 2+) FORMUL 7 ADP 4(C10 H15 N5 O10 P2) FORMUL 14 HSX C5 H11 O8 P FORMUL 17 HOH *1254(H2 O) HELIX 1 1 SER A 9 LEU A 20 1 12 HELIX 2 2 SER A 58 ILE A 72 1 15 HELIX 3 3 GLN A 73 TYR A 75 5 3 HELIX 4 4 ILE A 102 TYR A 114 1 13 HELIX 5 5 ASP A 125 SER A 132 5 8 HELIX 6 6 ALA A 141 LYS A 150 1 10 HELIX 7 7 ASP A 161 GLY A 163 5 3 HELIX 8 8 GLY A 164 GLY A 176 1 13 HELIX 9 9 GLY A 216 LYS A 229 1 14 HELIX 10 10 GLY A 246 GLN A 253 1 8 HELIX 11 11 VAL A 273 ASP A 285 1 13 HELIX 12 12 SER B 9 LEU B 20 1 12 HELIX 13 13 SER B 58 ILE B 72 1 15 HELIX 14 14 GLN B 73 TYR B 75 5 3 HELIX 15 15 ILE B 102 TYR B 114 1 13 HELIX 16 16 ASP B 125 SER B 132 5 8 HELIX 17 17 ALA B 141 LYS B 150 1 10 HELIX 18 18 GLY B 164 GLY B 176 1 13 HELIX 19 19 GLY B 216 LYS B 229 1 14 HELIX 20 20 GLY B 246 GLN B 253 1 8 HELIX 21 21 VAL B 273 ASP B 285 1 13 HELIX 22 22 SER C 9 LEU C 20 1 12 HELIX 23 23 SER C 58 ILE C 72 1 15 HELIX 24 24 GLN C 73 TYR C 75 5 3 HELIX 25 25 ILE C 102 TYR C 114 1 13 HELIX 26 26 ASP C 125 SER C 132 5 8 HELIX 27 27 ALA C 141 LYS C 150 1 10 HELIX 28 28 ASP C 161 GLY C 163 5 3 HELIX 29 29 GLY C 164 GLY C 176 1 13 HELIX 30 30 GLY C 216 LYS C 229 1 14 HELIX 31 31 GLY C 246 GLN C 253 1 8 HELIX 32 32 VAL C 273 ASP C 285 1 13 HELIX 33 33 SER D 9 LYS D 21 1 13 HELIX 34 34 SER D 58 ILE D 72 1 15 HELIX 35 35 GLN D 73 TYR D 75 5 3 HELIX 36 36 ILE D 102 SER D 112 1 11 HELIX 37 37 ASP D 125 SER D 132 5 8 HELIX 38 38 ALA D 141 LYS D 150 1 10 HELIX 39 39 GLY D 164 GLY D 176 1 13 HELIX 40 40 GLY D 216 LYS D 229 1 14 HELIX 41 41 GLY D 246 GLN D 253 1 8 HELIX 42 42 VAL D 273 ASP D 285 1 13 SHEET 1 A 5 MET A 1 ALA A 5 0 SHEET 2 A 5 ASN A 49 ILE A 53 1 O ILE A 53 N ILE A 4 SHEET 3 A 5 SER A 79 ALA A 84 1 O ILE A 83 N ILE A 52 SHEET 4 A 5 SER A 117 VAL A 121 1 O SER A 117 N ILE A 82 SHEET 5 A 5 PHE A 136 LEU A 139 1 O LEU A 139 N THR A 120 SHEET 1 B 2 ASP A 28 ARG A 31 0 SHEET 2 B 2 LEU A 37 ARG A 40 -1 O TYR A 38 N ARG A 30 SHEET 1 C 6 LYS A 178 PHE A 181 0 SHEET 2 C 6 TYR A 156 SER A 159 1 N VAL A 157 O LYS A 178 SHEET 3 C 6 LYS A 205 ILE A 213 1 O LEU A 207 N VAL A 158 SHEET 4 C 6 LYS A 233 GLY A 241 1 O TYR A 235 N LEU A 206 SHEET 5 C 6 GLU A 257 THR A 261 1 O HIS A 259 N VAL A 236 SHEET 6 C 6 SER A 269 ILE A 271 1 O ILE A 271 N VAL A 260 SHEET 1 D 2 GLU A 183 ASP A 188 0 SHEET 2 D 2 THR A 191 LYS A 195 -1 O THR A 191 N ILE A 187 SHEET 1 E 5 MET B 1 ALA B 5 0 SHEET 2 E 5 ASN B 49 ILE B 53 1 O ILE B 53 N ILE B 4 SHEET 3 E 5 SER B 79 ALA B 84 1 O ILE B 83 N ILE B 52 SHEET 4 E 5 SER B 117 VAL B 121 1 O SER B 117 N ILE B 82 SHEET 5 E 5 LYS B 135 LEU B 139 1 O LEU B 139 N THR B 120 SHEET 1 F 2 ASP B 28 ARG B 31 0 SHEET 2 F 2 LEU B 37 ARG B 40 -1 O TYR B 38 N ARG B 30 SHEET 1 G 6 LYS B 178 PHE B 181 0 SHEET 2 G 6 TYR B 156 SER B 159 1 N VAL B 157 O LYS B 178 SHEET 3 G 6 LYS B 205 ILE B 213 1 O LEU B 207 N VAL B 158 SHEET 4 G 6 LYS B 233 GLY B 241 1 O HIS B 240 N ASP B 211 SHEET 5 G 6 GLU B 257 THR B 261 1 O HIS B 259 N VAL B 236 SHEET 6 G 6 SER B 269 ILE B 271 1 O ILE B 271 N VAL B 260 SHEET 1 H 2 GLU B 183 ASP B 188 0 SHEET 2 H 2 THR B 191 LYS B 195 -1 O GLU B 193 N LYS B 185 SHEET 1 I 5 LYS C 2 ALA C 5 0 SHEET 2 I 5 ASN C 49 ILE C 53 1 O ILE C 53 N ILE C 4 SHEET 3 I 5 SER C 79 ALA C 84 1 O ILE C 83 N ILE C 52 SHEET 4 I 5 SER C 117 VAL C 121 1 O SER C 117 N ILE C 82 SHEET 5 I 5 LYS C 135 LEU C 139 1 O LEU C 139 N THR C 120 SHEET 1 J 2 ASP C 28 ARG C 31 0 SHEET 2 J 2 LEU C 37 ARG C 40 -1 O TYR C 38 N ARG C 30 SHEET 1 K 6 LYS C 178 PHE C 181 0 SHEET 2 K 6 TYR C 156 SER C 159 1 N VAL C 157 O LYS C 178 SHEET 3 K 6 LYS C 205 ILE C 213 1 O LEU C 207 N VAL C 158 SHEET 4 K 6 LYS C 233 GLY C 241 1 O LYS C 233 N LEU C 206 SHEET 5 K 6 GLU C 257 THR C 261 1 O GLU C 257 N VAL C 236 SHEET 6 K 6 SER C 269 ILE C 271 1 O ILE C 271 N VAL C 260 SHEET 1 L 2 GLU C 183 ASP C 188 0 SHEET 2 L 2 THR C 191 LYS C 195 -1 O THR C 191 N ILE C 187 SHEET 1 M 5 LYS D 2 ALA D 5 0 SHEET 2 M 5 ASN D 49 ILE D 53 1 O ILE D 53 N ILE D 4 SHEET 3 M 5 SER D 79 ALA D 84 1 O ILE D 83 N ILE D 52 SHEET 4 M 5 SER D 117 VAL D 121 1 O SER D 117 N ILE D 82 SHEET 5 M 5 PHE D 136 LEU D 139 1 O LEU D 139 N THR D 120 SHEET 1 N 2 ASP D 28 ARG D 31 0 SHEET 2 N 2 LEU D 37 ARG D 40 -1 O TYR D 38 N ARG D 30 SHEET 1 O 6 LYS D 178 PHE D 181 0 SHEET 2 O 6 ASP D 155 SER D 159 1 N SER D 159 O PHE D 180 SHEET 3 O 6 LYS D 205 ILE D 213 1 O LEU D 207 N VAL D 158 SHEET 4 O 6 LYS D 233 GLY D 241 1 O TYR D 235 N LEU D 206 SHEET 5 O 6 GLU D 257 THR D 261 1 O GLU D 257 N VAL D 236 SHEET 6 O 6 SER D 269 ILE D 271 1 O ILE D 271 N VAL D 260 SHEET 1 P 2 GLU D 183 ASP D 188 0 SHEET 2 P 2 THR D 191 LYS D 195 -1 O GLU D 193 N LYS D 185 LINK MG MG A 287 O2A ADP A 288 1555 1555 2.24 LINK MG MG A 287 O2B ADP A 288 1555 1555 2.38 LINK MG MG A 287 O HOH A 292 1555 1555 2.16 LINK MG MG A 287 O HOH A 293 1555 1555 2.12 LINK MG MG A 287 O HOH A 294 1555 1555 2.10 LINK MG MG A 287 O HOH A 303 1555 1555 2.18 LINK MG MG B 287 O2A ADP B 288 1555 1555 1.99 LINK MG MG B 287 O2B ADP B 288 1555 1555 2.06 LINK MG MG B 287 O HOH B 291 1555 1555 2.97 LINK MG MG B 287 O HOH B 293 1555 1555 2.12 LINK O2B ADP C 286 MG MG C 289 1555 1555 1.94 LINK O2A ADP C 286 MG MG C 289 1555 1555 1.95 LINK MG MG C 289 O HOH C 343 1555 1555 2.07 LINK MG MG C 289 O HOH C1252 1555 1555 2.11 LINK MG MG C 289 O HOH C1253 1555 1555 2.05 LINK MG MG D 287 O2A ADP D 288 1555 1555 2.15 LINK MG MG D 287 O3B ADP D 288 1555 1555 2.18 LINK MG MG D 287 O HOH D 289 1555 1555 2.11 LINK MG MG D 287 O HOH D 290 1555 1555 2.06 LINK MG MG D 287 O HOH D 295 1555 1555 2.04 CRYST1 76.599 61.841 127.938 90.00 103.94 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013055 0.000000 0.003240 0.00000 SCALE2 0.000000 0.016171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008053 0.00000