HEADER IMMUNE SYSTEM 29-MAR-10 3MCK TITLE CRYSTAL STRUCTURE OF ANTI-BETA-AMYLOID ANTIBODY C705 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C705 MONOCLONAL LIGHT CHAIN; COMPND 3 CHAIN: L, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C705 MONOCLONAL HEAVY CHAIN; COMPND 7 CHAIN: H, B; COMPND 8 FRAGMENT: FD FRAGMENT OF THE HEAVY CHAIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL: HUMAN EMBRYONIC KIDNEY (HEK) 293 CELLS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL: HUMAN EMBRYONIC KIDNEY (HEK) 293 CELLS KEYWDS IMMUNOGLOBULIN FOLD, MONOCLONAL ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,G.L.GILLILAND REVDAT 4 06-SEP-23 3MCK 1 REMARK REVDAT 3 02-NOV-11 3MCK 1 JRNL REVDAT 2 10-AUG-11 3MCK 1 JRNL VERSN REVDAT 1 09-FEB-11 3MCK 0 JRNL AUTH J.C.ALMAGRO,M.P.BEAVERS,F.HERNANDEZ-GUZMAN,J.MAIER, JRNL AUTH 2 J.SHAULSKY,K.BUTENHOF,P.LABUTE,N.THORSTEINSON,K.KELLY, JRNL AUTH 3 A.TEPLYAKOV,J.LUO,R.SWEET,G.L.GILLILAND JRNL TITL ANTIBODY MODELING ASSESSMENT. JRNL REF PROTEINS V. 79 3050 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 21935986 JRNL DOI 10.1002/PROT.23130 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 41062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1328 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2376 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6766 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.347 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.765 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6940 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9458 ; 1.382 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 886 ; 6.947 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;35.028 ;24.141 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1120 ;18.365 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.915 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1088 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5168 ; 0.000 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2920 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4585 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 388 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4558 ; 2.285 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7222 ; 4.247 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2761 ;15.428 ;20.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2236 ;20.550 ;88.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NONE REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42606 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.42900 REMARK 200 R SYM FOR SHELL (I) : 0.42900 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1E4X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8K, 0.2 M LITHIUM SULFATE, 0.1 REMARK 280 M SODIUM ACETATE PH 4.5; CRYO CONDITIONS: MOTHER LIQUOR + 15% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K, PH REMARK 280 4.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.12500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.12500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE H 227 REMARK 465 LYS H 228 REMARK 465 ILE B 227 REMARK 465 LYS B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 47 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 LEU H 82 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ILE H 106 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 PRO A 45 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS L 31 -154.52 -82.49 REMARK 500 TYR L 37 77.01 -107.49 REMARK 500 VAL L 56 -56.24 69.04 REMARK 500 ASN L 195 -51.04 -120.27 REMARK 500 ASN L 217 -71.02 -56.30 REMARK 500 SER H 15 -10.19 87.73 REMARK 500 SER H 30 56.88 -99.58 REMARK 500 SER H 103 -83.42 -86.91 REMARK 500 ILE H 104 -63.32 -147.85 REMARK 500 CYS H 138 66.68 -64.36 REMARK 500 ASN H 165 52.95 35.87 REMARK 500 SER H 182 55.14 70.89 REMARK 500 ASP H 183 -23.69 79.92 REMARK 500 HIS A 31 -158.02 -79.58 REMARK 500 TYR A 37 77.72 -114.83 REMARK 500 PRO A 45 -51.25 -17.10 REMARK 500 VAL A 56 -54.00 70.12 REMARK 500 THR A 74 -28.37 -144.93 REMARK 500 PRO A 209 132.87 -36.54 REMARK 500 SER B 15 -20.44 92.05 REMARK 500 THR B 31 114.64 -168.71 REMARK 500 TRP B 55 -9.56 -53.09 REMARK 500 ALA B 93 160.78 177.16 REMARK 500 SER B 103 -75.19 -91.84 REMARK 500 SER B 182 -104.55 -135.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 31 SER B 32 148.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT H 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MCL RELATED DB: PDB DBREF 3MCK L 1 219 PDB 3MCK 3MCK 1 219 DBREF 3MCK A 1 219 PDB 3MCK 3MCK 1 219 DBREF 3MCK H 1 228 PDB 3MCK 3MCK 1 228 DBREF 3MCK B 1 228 PDB 3MCK 3MCK 1 228 SEQRES 1 L 219 ASP VAL MET MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 219 TRP TYR MET GLN LYS PRO GLY GLN SER PRO MET LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER SER VAL GLU ALA GLU ASP LEU GLY VAL PHE SEQRES 8 L 219 TYR CYS PHE GLN GLY SER ARG VAL PRO LEU THR PHE GLY SEQRES 9 L 219 ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 228 GLN VAL THR LEU LYS GLU SER GLY PRO GLY ILE LEU GLN SEQRES 2 H 228 PRO SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY SEQRES 3 H 228 PHE SER LEU SER THR SER GLY MET GLY VAL SER TRP ILE SEQRES 4 H 228 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA HIS SEQRES 5 H 228 ILE TYR TRP ASP ASP ASP LYS ARG TYR ASN PRO SER LEU SEQRES 6 H 228 LYS SER ARG LEU THR ILE SER LYS ASP THR SER ARG ASN SEQRES 7 H 228 GLN VAL PHE LEU LYS ILE THR SER VAL ASP THR THR ASP SEQRES 8 H 228 THR ALA THR TYR TYR CYS THR ARG SER SER GLY SER ILE SEQRES 9 H 228 VAL ILE ALA THR GLY PHE ALA TYR TRP GLY GLN GLY THR SEQRES 10 H 228 LEU VAL THR VAL SER ALA ALA LYS THR THR ALA PRO SER SEQRES 11 H 228 VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR THR GLY SEQRES 12 H 228 SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE SEQRES 13 H 228 PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SER LEU SEQRES 14 H 228 SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 228 ASP LEU TYR THR LEU SER SER SER VAL THR VAL THR SER SEQRES 16 H 228 SER THR TRP PRO SER GLN SER ILE THR CYS ASN VAL ALA SEQRES 17 H 228 HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE GLU SEQRES 18 H 228 PRO ARG GLY PRO THR ILE LYS SEQRES 1 A 219 ASP VAL MET MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 A 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 A 219 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 A 219 TRP TYR MET GLN LYS PRO GLY GLN SER PRO MET LEU LEU SEQRES 5 A 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 A 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 A 219 LYS ILE SER SER VAL GLU ALA GLU ASP LEU GLY VAL PHE SEQRES 8 A 219 TYR CYS PHE GLN GLY SER ARG VAL PRO LEU THR PHE GLY SEQRES 9 A 219 ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 228 GLN VAL THR LEU LYS GLU SER GLY PRO GLY ILE LEU GLN SEQRES 2 B 228 PRO SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY SEQRES 3 B 228 PHE SER LEU SER THR SER GLY MET GLY VAL SER TRP ILE SEQRES 4 B 228 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA HIS SEQRES 5 B 228 ILE TYR TRP ASP ASP ASP LYS ARG TYR ASN PRO SER LEU SEQRES 6 B 228 LYS SER ARG LEU THR ILE SER LYS ASP THR SER ARG ASN SEQRES 7 B 228 GLN VAL PHE LEU LYS ILE THR SER VAL ASP THR THR ASP SEQRES 8 B 228 THR ALA THR TYR TYR CYS THR ARG SER SER GLY SER ILE SEQRES 9 B 228 VAL ILE ALA THR GLY PHE ALA TYR TRP GLY GLN GLY THR SEQRES 10 B 228 LEU VAL THR VAL SER ALA ALA LYS THR THR ALA PRO SER SEQRES 11 B 228 VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR THR GLY SEQRES 12 B 228 SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE SEQRES 13 B 228 PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SER LEU SEQRES 14 B 228 SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 B 228 ASP LEU TYR THR LEU SER SER SER VAL THR VAL THR SER SEQRES 16 B 228 SER THR TRP PRO SER GLN SER ILE THR CYS ASN VAL ALA SEQRES 17 B 228 HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE GLU SEQRES 18 B 228 PRO ARG GLY PRO THR ILE LYS HET ACT H1001 4 HET ACT B1002 4 HETNAM ACT ACETATE ION FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *250(H2 O) HELIX 1 1 GLU L 84 LEU L 88 5 5 HELIX 2 2 SER L 126 SER L 132 1 7 HELIX 3 3 LYS L 188 ARG L 193 1 6 HELIX 4 4 LEU H 65 SER H 67 5 3 HELIX 5 5 ASP H 88 THR H 92 5 5 HELIX 6 6 SER H 166 SER H 168 5 3 HELIX 7 7 PRO H 210 SER H 213 5 4 HELIX 8 8 GLU A 84 LEU A 88 5 5 HELIX 9 9 SER A 126 SER A 132 1 7 HELIX 10 10 LYS A 188 ARG A 193 1 6 HELIX 11 11 LEU B 65 SER B 67 5 3 HELIX 12 12 THR B 75 ARG B 77 5 3 HELIX 13 13 ASP B 88 THR B 92 5 5 HELIX 14 14 SER B 166 SER B 168 5 3 HELIX 15 15 PRO B 210 SER B 213 5 4 SHEET 1 A 4 THR L 5 THR L 7 0 SHEET 2 A 4 ALA L 19 ARG L 24 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 75 ILE L 80 -1 O LEU L 78 N ILE L 21 SHEET 4 A 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 107 LEU L 111 1 O GLU L 110 N VAL L 13 SHEET 3 B 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 B 6 LEU L 38 GLN L 43 -1 N TYR L 41 O TYR L 92 SHEET 5 B 6 MET L 50 TYR L 54 -1 O MET L 50 N MET L 42 SHEET 6 B 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 C 4 SER L 10 VAL L 13 0 SHEET 2 C 4 THR L 107 LEU L 111 1 O GLU L 110 N VAL L 13 SHEET 3 C 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 C 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 D 4 THR L 119 PHE L 123 0 SHEET 2 D 4 GLY L 134 PHE L 144 -1 O PHE L 140 N SER L 121 SHEET 3 D 4 TYR L 178 THR L 187 -1 O LEU L 184 N VAL L 137 SHEET 4 D 4 VAL L 164 TRP L 168 -1 N LEU L 165 O THR L 183 SHEET 1 E 4 SER L 158 ARG L 160 0 SHEET 2 E 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 E 4 SER L 196 THR L 202 -1 O GLU L 200 N LYS L 152 SHEET 4 E 4 ILE L 210 ASN L 215 -1 O PHE L 214 N TYR L 197 SHEET 1 F 4 THR H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O SER H 23 N LYS H 5 SHEET 3 F 4 GLN H 79 ILE H 84 -1 O VAL H 80 N CYS H 22 SHEET 4 F 4 LEU H 69 ASP H 74 -1 N ASP H 74 O GLN H 79 SHEET 1 G 6 ILE H 11 LEU H 12 0 SHEET 2 G 6 THR H 117 VAL H 121 1 O THR H 120 N LEU H 12 SHEET 3 G 6 ALA H 93 ARG H 99 -1 N TYR H 95 O THR H 117 SHEET 4 G 6 GLY H 35 GLN H 41 -1 N ILE H 39 O TYR H 96 SHEET 5 G 6 GLU H 48 TYR H 54 -1 O LEU H 50 N TRP H 38 SHEET 6 G 6 LYS H 59 TYR H 61 -1 O ARG H 60 N HIS H 52 SHEET 1 H 4 ILE H 11 LEU H 12 0 SHEET 2 H 4 THR H 117 VAL H 121 1 O THR H 120 N LEU H 12 SHEET 3 H 4 ALA H 93 ARG H 99 -1 N TYR H 95 O THR H 117 SHEET 4 H 4 TYR H 112 TRP H 113 -1 O TYR H 112 N ARG H 99 SHEET 1 I 4 SER H 130 LEU H 134 0 SHEET 2 I 4 SER H 145 TYR H 155 -1 O LYS H 153 N SER H 130 SHEET 3 I 4 LEU H 184 THR H 194 -1 O LEU H 187 N VAL H 152 SHEET 4 I 4 VAL H 173 THR H 175 -1 N HIS H 174 O SER H 190 SHEET 1 J 4 SER H 130 LEU H 134 0 SHEET 2 J 4 SER H 145 TYR H 155 -1 O LYS H 153 N SER H 130 SHEET 3 J 4 LEU H 184 THR H 194 -1 O LEU H 187 N VAL H 152 SHEET 4 J 4 VAL H 179 GLN H 181 -1 N VAL H 179 O THR H 186 SHEET 1 K 3 THR H 161 TRP H 164 0 SHEET 2 K 3 THR H 204 HIS H 209 -1 O ASN H 206 N THR H 163 SHEET 3 K 3 THR H 214 LYS H 219 -1 O VAL H 216 N VAL H 207 SHEET 1 L 4 MET A 4 THR A 7 0 SHEET 2 L 4 ALA A 19 SER A 25 -1 O SER A 22 N THR A 7 SHEET 3 L 4 ASP A 75 ILE A 80 -1 O ILE A 80 N ALA A 19 SHEET 4 L 4 PHE A 67 SER A 72 -1 N SER A 68 O LYS A 79 SHEET 1 M 6 SER A 10 VAL A 13 0 SHEET 2 M 6 THR A 107 LEU A 111 1 O GLU A 110 N VAL A 13 SHEET 3 M 6 GLY A 89 GLN A 95 -1 N GLY A 89 O LEU A 109 SHEET 4 M 6 LEU A 38 GLN A 43 -1 N TYR A 41 O TYR A 92 SHEET 5 M 6 MET A 50 TYR A 54 -1 O MET A 50 N MET A 42 SHEET 6 M 6 ASN A 58 ARG A 59 -1 O ASN A 58 N TYR A 54 SHEET 1 N 4 SER A 10 VAL A 13 0 SHEET 2 N 4 THR A 107 LEU A 111 1 O GLU A 110 N VAL A 13 SHEET 3 N 4 GLY A 89 GLN A 95 -1 N GLY A 89 O LEU A 109 SHEET 4 N 4 THR A 102 PHE A 103 -1 O THR A 102 N GLN A 95 SHEET 1 O 4 THR A 119 PHE A 123 0 SHEET 2 O 4 GLY A 134 PHE A 144 -1 O PHE A 140 N SER A 121 SHEET 3 O 4 TYR A 178 THR A 187 -1 O LEU A 186 N ALA A 135 SHEET 4 O 4 VAL A 164 TRP A 168 -1 N LEU A 165 O THR A 183 SHEET 1 P 4 SER A 158 ARG A 160 0 SHEET 2 P 4 ASN A 150 ILE A 155 -1 N ILE A 155 O SER A 158 SHEET 3 P 4 SER A 196 THR A 202 -1 O GLU A 200 N LYS A 152 SHEET 4 P 4 ILE A 210 ASN A 215 -1 O PHE A 214 N TYR A 197 SHEET 1 Q 4 THR B 3 SER B 7 0 SHEET 2 Q 4 LEU B 18 SER B 25 -1 O SER B 23 N LYS B 5 SHEET 3 Q 4 GLN B 79 ILE B 84 -1 O VAL B 80 N CYS B 22 SHEET 4 Q 4 LEU B 69 ASP B 74 -1 N ASP B 74 O GLN B 79 SHEET 1 R 6 ILE B 11 LEU B 12 0 SHEET 2 R 6 THR B 117 VAL B 121 1 O THR B 120 N LEU B 12 SHEET 3 R 6 ALA B 93 ARG B 99 -1 N TYR B 95 O THR B 117 SHEET 4 R 6 GLY B 35 GLN B 41 -1 N ILE B 39 O TYR B 96 SHEET 5 R 6 GLU B 48 TYR B 54 -1 O LEU B 50 N TRP B 38 SHEET 6 R 6 LYS B 59 TYR B 61 -1 O ARG B 60 N HIS B 52 SHEET 1 S 4 ILE B 11 LEU B 12 0 SHEET 2 S 4 THR B 117 VAL B 121 1 O THR B 120 N LEU B 12 SHEET 3 S 4 ALA B 93 ARG B 99 -1 N TYR B 95 O THR B 117 SHEET 4 S 4 TYR B 112 TRP B 113 -1 O TYR B 112 N ARG B 99 SHEET 1 T 4 SER B 130 LEU B 134 0 SHEET 2 T 4 SER B 145 TYR B 155 -1 O LYS B 153 N SER B 130 SHEET 3 T 4 TYR B 185 THR B 194 -1 O VAL B 193 N VAL B 146 SHEET 4 T 4 VAL B 173 THR B 175 -1 N HIS B 174 O SER B 190 SHEET 1 U 4 SER B 130 LEU B 134 0 SHEET 2 U 4 SER B 145 TYR B 155 -1 O LYS B 153 N SER B 130 SHEET 3 U 4 TYR B 185 THR B 194 -1 O VAL B 193 N VAL B 146 SHEET 4 U 4 VAL B 179 LEU B 180 -1 N VAL B 179 O THR B 186 SHEET 1 V 3 THR B 161 TRP B 164 0 SHEET 2 V 3 THR B 204 HIS B 209 -1 O ASN B 206 N THR B 163 SHEET 3 V 3 THR B 214 LYS B 219 -1 O LYS B 218 N CYS B 205 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.04 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.03 SSBOND 3 CYS L 219 CYS H 138 1555 1555 2.04 SSBOND 4 CYS H 22 CYS H 97 1555 1555 2.04 SSBOND 5 CYS H 150 CYS H 205 1555 1555 2.03 SSBOND 6 CYS A 23 CYS A 93 1555 1555 2.05 SSBOND 7 CYS A 139 CYS A 199 1555 1555 2.04 SSBOND 8 CYS A 219 CYS B 138 1555 1555 2.04 SSBOND 9 CYS B 22 CYS B 97 1555 1555 2.03 SSBOND 10 CYS B 150 CYS B 205 1555 1555 2.03 CISPEP 1 THR L 7 PRO L 8 0 -5.49 CISPEP 2 VAL L 99 PRO L 100 0 4.99 CISPEP 3 TYR L 145 PRO L 146 0 4.54 CISPEP 4 PHE H 156 PRO H 157 0 -7.58 CISPEP 5 GLU H 158 PRO H 159 0 0.96 CISPEP 6 TRP H 198 PRO H 199 0 2.50 CISPEP 7 THR A 7 PRO A 8 0 -8.99 CISPEP 8 VAL A 99 PRO A 100 0 2.51 CISPEP 9 TYR A 145 PRO A 146 0 1.36 CISPEP 10 PHE B 156 PRO B 157 0 -9.73 CISPEP 11 GLU B 158 PRO B 159 0 2.17 CISPEP 12 TRP B 198 PRO B 199 0 6.97 SITE 1 AC1 8 PRO H 177 VAL H 179 THR H 186 LEU H 187 SITE 2 AC1 8 SER H 188 SER L 181 THR L 183 HOH L 236 SITE 1 AC2 7 SER A 167 SER A 181 PHE B 176 PRO B 177 SITE 2 AC2 7 THR B 186 LEU B 187 SER B 188 CRYST1 172.250 78.250 74.630 90.00 95.45 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005806 0.000000 0.000554 0.00000 SCALE2 0.000000 0.012780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013460 0.00000